Salmo trutta (river trout): 115193980
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Entry
115193980 CDS
T08542
Symbol
polr1b
Name
(RefSeq) DNA-directed RNA polymerase I subunit RPA2
KO
K03002
DNA-directed RNA polymerase I subunit RPA2 [EC:
2.7.7.6
]
Organism
stru
Salmo trutta (river trout)
Pathway
stru03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
stru00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
115193980 (polr1b)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
stru03021
]
115193980 (polr1b)
Enzymes [BR:
stru01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
115193980 (polr1b)
Transcription machinery [BR:
stru03021
]
Eukaryotic type
RNA polymerase I system
RNA polymerase I
Core subunits
115193980 (polr1b)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_1
RNA_pol_Rpb2_3
RNA_pol_Rpa2_4
RNA_pol_Rpb2_7
RNA_pol_Rpb2_2
DUF1186
Motif
Other DBs
NCBI-GeneID:
115193980
NCBI-ProteinID:
XP_029609031
Ensembl:
ENSSTUG00000008406
UniProt:
A0A673XBT3
LinkDB
All DBs
Position
5:complement(27473780..27490088)
Genome browser
AA seq
1134 aa
AA seq
DB search
MDFANKWSSLLTSPSLKHLTEAGFGIPKEKQHAAVQDLTKAHIESFDQAVSDGLCRAVQS
IRPLEFMFKNDRISLAFVEATIFKPVVGKGSICRDLRVFPAECRGRRCSYRGKLVADVSW
SVNGVPKGIIKQSLGQLPIMVKSRLCNLHGLPPKELIEHHEEAEEMGGYFIVNGNEKVIR
MLIMPRRNYPIAMSRPKWKNRGQGYTQYGISMHCVKEEHTAINMNLHYLDNGTVMLNFIY
QKELFFLPLGFALKALVDFTDFQIYQELIKGREANSFYKSCVSEMLRLVMEEGCITRGKV
LNYLGERFRVKMNLPEWYTHEQCANYLLDQCICIHLKSDVEKFYLLCLMTRKLFTFAKQE
CMEENPDSLMCQEVLTPGRLYLMFLKEKMAAWMVSVKLAMDKRAHRLTGGVSSDNLVKMF
NMGSDVTHPFEYLLATGNLTSKTGLGMLQNTGLCVVADKLNFIRYLSHFRCVHRGAAFAK
MRTTSVRRLLPESWGFLCPVHTPDGEPCGLMNHMTAHCEIIAPALPTTTLPALLCSLGVT
PVDGSPGKAYTDCYPVLLDGAMVGWVETELAPFLADSLRRFKVLKEKKIPPWTEIVLVPQ
TSKASMYPGLYLFTTPCRMVRPVRNLALGQQELIGTFEQLYINVGISEDEIEPGVTTHQE
LFLHSMLSVVANFIPYSDHNQSPRNMYQCQMGKQTMGFPLHSFQDRSDNKLYRLQTPQSP
LVRPVMYDHYNMDNYPIGTNAIVAVISYTGYDMEDAMILNKSSWERGFGHGCVYKTELVD
LAEKMKGEDNLVFGVKPGDPKVMDKLDTDGLPYIGAVLQHGDPFYSYINLNTGQSFVNFY
KSQESCVVDNIKVCSNDVGSGRFKRVCITVRVPRNPTIGDKFASRHGQKGILSRLWPAED
MPFTESGMTPDILFNPHGFPSRMTIGMLIESMAGKSGALHGLCHDATPFTFSEENSALEH
FGDMLRAAGYNHYGTERLYSGLSGLELEADIFIGVVYYQRLRHMVSDKFQVRTTGARDKV
TNQPVGGRNIQGGIRFGEMERDALLAHGTSFLLHDRLFNCSDRSVAQVCVDCGSLLSPLL
EKPPPYWSATRHRKTVCLLCGKSDSIDTVSVPYVFRYFVAELAAMNIKIKLDVK
NT seq
3405 nt
NT seq
+upstream
nt +downstream
nt
atggattttgcgaataagtggagtagtttactgacaagtccaagccttaaacatttaaca
gaagcaggcttcggcataccgaaggaaaaacaacatgccgctgttcaggacctaacgaag
gctcatattgagtcgtttgaccaagcagtttcagatggactgtgtcgtgctgtacagtcc
atccgtcccttggagtttatgtttaaaaatgaccggatcagcctggcatttgtggaggcc
accatctttaaaccagtggtgggcaaaggaagcatctgccgggacctgagggtgttccca
gcagagtgcagagggagacgctgctcctaccggggaaagcttgtggcagatgtcagctgg
tctgtgaatggggttcccaaaggcatcatcaagcagtctctgggccagttgcccatcatg
gtgaagtctaggctgtgtaacctgcatgggctccctcccaaagagctcattgagcaccat
gaggaggctgaggaaatgggtggttattttattgtgaatgggaacgagaaggtcattcgc
atgctgatcatgccaaggaggaactaccctatcgctatgtcaaggccgaagtggaagaac
agaggccagggatacactcagtatggtatctcaatgcactgtgtgaaggaggagcacacc
gctatcaatatgaacctgcattacctggacaacggaactgtgatgctcaacttcatatac
cagaaagagctcttcttcctccccctgggctttgcactaaaggctctagtggacttcaca
gacttccagatttaccaggagctgatcaaaggtcgtgaggcgaactccttctacaagagc
tgtgtgtctgagatgctgcgactcgtcatggaggagggctgcatcacccgcggcaaggtg
ctcaactacctgggcgagcgcttccgggtcaagatgaacctgccagagtggtacacccac
gaacagtgtgccaactacctgctagaccagtgcatctgtatccacctgaagtcggatgtg
gagaagttctacctgctgtgtctgatgacgcggaagctattcacgtttgccaagcaggag
tgtatggaggagaacccggacagtctgatgtgtcaggaggtgctcacgccaggacggctc
tacctaatgtttctcaaggagaagatggctgcctggatggtgtctgtgaaattggctatg
gacaagagggcccataggctaactggtggggtgagctctgataatctggtgaagatgttc
aacatgggctctgatgttacccatccctttgagtatctgctagccactgggaatctcact
tcaaagacgggtctgggcatgctccagaacacgggactgtgtgtggtggccgacaagctc
aacttcatccgctacctgtcccacttccgctgtgtgcacagaggggcagcctttgccaag
atgaggaccacctccgtacgtcgtctgctgcccgagtcctggggcttcctgtgccccgtg
cacacccccgacggagagccctgcggcctcatgaaccacatgacggcccactgtgaaatc
atagccccggccctgcccaccaccaccctccctgccctgctctgctccctcggtgtgact
cctgtggatggttctcctggcaaggcctacactgactgctatcctgtgctcctggatggt
gccatggtgggttgggtagagactgagctggcccccttcctcgcagactccctccgcagg
ttcaaggtgttgaaggagaagaagatccctccctggactgagatagttctggttccccag
accagcaaggccagcatgtacccaggcctgtacctcttcaccaccccctgccgcatggtg
cggcctgtccgcaacctggccctgggccagcaggaactgatcggcacctttgaacagctc
tacatcaacgtgggcatcagtgaggatgagatcgagccgggtgtgaccacccaccaggag
ctcttcctccacagcatgctgagcgtggtggctaacttcatcccttactcggaccacaac
cagagtcccaggaacatgtaccagtgccagatgggtaaacagacaatgggcttccccctc
cactcattccaggaccgctcggacaacaagctgtaccgccttcaaacccctcagagccct
ctggtcaggcctgtcatgtacgaccactacaacatggacaactaccccatcggcaccaac
gccattgtagctgtgatctcctacactggctacgacatggaggacgccatgatcctgaac
aagtcgtcatgggaaaggggctttggtcatggctgtgtttacaagactgagctggtggac
ctggcagagaagatgaagggcgaggacaacctggtgtttggggtcaaacccggtgacccc
aaggtaatggacaaactggacactgatgggctgccctacatcggcgcagtgctacaacat
ggagaccccttctacagctacatcaacctcaacaccgggcagagctttgtcaacttttac
aagagtcaagaaagctgtgtagtagacaacatcaaggtgtgcagcaacgatgttggctcg
ggccgcttcaagcgcgtctgcatcaccgtgcgagtgccccgtaaccccaccatcggggac
aagttcgccagccgccacgggcagaagggcatcctgagccgcctgtggcctgccgaggac
atgcccttcacagagagcggcatgacccccgacattctgttcaaccctcacggcttccct
tcccgcatgaccatcggcatgctcatcgagagcatggccggcaagtcgggcgccctccac
ggcctgtgccacgacgccactcccttcactttctccgaggagaactcggcactggagcat
tttggggacatgttgcgcgctgccggctacaaccactacggcaccgagcgcctctacagc
ggcctcagcggcctggagctagaggcggacatcttcatcggcgtggtctactaccagagg
ctgcgtcacatggtctccgacaagttccaggtgaggaccactggcgcgcgggacaaggtg
accaaccagccggtgggtggaaggaacatccaggggggcatccgcttcggggagatggag
cgcgacgccctgctggcccacgggacctccttcctgctccacgaccgcctcttcaactgc
tctgaccgctctgtggcacaggtgtgtgtggactgtggtagcctactgtcccctctactg
gagaaaccaccaccctactggtcggccacacgccaccgcaagactgtctgcctcctctgc
ggcaagagtgactccatcgatacggtgtctgtgccatacgtcttccgctactttgttgcc
gagctggcggcgatgaacatcaaaatcaaattggacgtgaagtga
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