Salmo trutta (river trout): 115194045
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Entry
115194045 CDS
T08542
Symbol
ercc6
Name
(RefSeq) DNA excision repair protein ERCC-6
KO
K10841
DNA excision repair protein ERCC-6
Organism
stru
Salmo trutta (river trout)
Pathway
stru03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
stru00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
115194045 (ercc6)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
stru03036
]
115194045 (ercc6)
03400 DNA repair and recombination proteins [BR:
stru03400
]
115194045 (ercc6)
Chromosome and associated proteins [BR:
stru03036
]
Eukaryotic type
Chromatin remodeling factors
B-WICH complex
115194045 (ercc6)
DNA repair and recombination proteins [BR:
stru03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
Other TCR factor
115194045 (ercc6)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
Helicase_C
ResIII
HDA2-3
Pneumovirus_M2
Motif
Other DBs
NCBI-GeneID:
115194045
NCBI-ProteinID:
XP_029609205
Ensembl:
ENSSTUG00000036387
LinkDB
All DBs
Position
5:complement(30507657..30560622)
Genome browser
AA seq
1489 aa
AA seq
DB search
MPVEDTEDQVPLSLFNPASAALTPGGMEEDGANRGTAGCSISITGTSQGDTEQPAMACPD
GTGSGEGSSAIKKSGALLHIDRQRIQAVSASSGAAELQGLGVAVYDQDVLEQGVLQQVDQ
AIHEASQAAAKAEAEKEYQSVLDDVRSCMAALKHINKIIEQLTPYSTSSKDINRQMESVR
RQKENKEKQLKKIRAKQRRLQAILGGEDTQKIEAELLLEDDGDEEPGPSTLGSMLMPAQE
TEWEELIRTGHMTPFGTRVPQKEEKKEPRKFMLSENSGFDAYLADQAKMAVDRKRPAPLK
QKKKKTAVGKEGKKTNGAALPSYSVDNKLQKRMRKLQRTALKAHPKAPGKGVTPIPKPRT
KLQAGGDEMDSEGSEYLPSDELMDPEREEREDRDEGWGEEDEVDYYELKPYRKKSEEKGG
KKGKRRERDEEYYPDSSEEDEGSGKKGKEKLKKDDGDVEFFKQRIRRWRRLRLREREEKR
ERGEEESDQSDAEFDEGFKVPGFLWNKLFKYQQTGVRWLWELHCQQAGGILGDEMGLGKT
IQVIAFLAGLSYSKLRTRGSNYRYQGLGPTVIVCPATVMHQWVSEFHTWWPPFRVAVLHD
TGSFTQTKEKLISEMAACHGVLITSYSAVRIMQETLQRYDGWHYVILDEGHKIRNPHAGV
TTACKQFRTPHRFILSGSPMQNNLKELWSLFDFVFPGKLGTLPIFMEQFSVPITMGGYSN
ASPVQVQTAYKCACVLRDTINPYLLRRMKADVKANLSLPDKNEQVLFCRLTEEQREVYQS
YLDSKEVYQILNGDMQVFSGLIALRKMCNHPDLFSGGPKILKGVPEDQLTEEEHFGFWKR
SGKLMVVESLLRLWFKQQHRVLLFTQSRQMLGILEVFVRENGYTYVKMDGTTTIASRQPL
IARYNEDKSIFVFLLTTRVGGLGVNLTGANRVIIYDPDWNPSTDTQARERAWRIGQKKEV
TVYRLLTAGTIEEKIYHRQIFKHFLTNRVLKDPKQRRFFKSNDIYELFTLSNPDGTQGTE
TSAIFAGTGSDVQAPKKPVRPRSNHRHSVTNHNVGSTGGGAIPSPSPRPGDMTTTLCSNI
SFNKNNRLKDSQEANQGEADIPIGQSQTECDTQHSREEGSNAHILTDPERDQNSILPHKH
RDSPVTSPNPHKHSHTNAVSPSTQKHRDKHSPHKHRDSQGPGSSPYKHREKRKHCDSTVE
GPKNKHGKQAKVEGHRISYLVKKRSYKGQEEREGQPDKQDQRQSDDYVLAKLFKKSGIHS
VMQHDSIMEASNPDFVLVEAEANRVAKDALRALKVSRQHCRLPYNQPAPAPARKRFGQKK
NPLLSAPPATAVPAQDKCKDAAIIKKTIARKPIPGGHFSGEGVEVGGCSSTTAPLSSSTL
LARMKARNYLSLPQREGDEGGEEEGGARIPSGPPAPPTEHDELLVELRNFVAFQGAVDGQ
ASTKEVLDHFTPRLTQTQTPVFRELLRNICNFHRAKGQEGTWRLKPDYR
NT seq
4470 nt
NT seq
+upstream
nt +downstream
nt
atgccagtagaagatactgaggaccaggttcctctttccctcttcaacccggcgagtgct
gctctcaccccgggaggaatggaggaggatggggcaaacagaggaactgctggatgctca
atctccatcactgggaccagccagggggacactgagcagcctgcaatggcctgcccagat
ggcactggatctggggagggcagcagtgccattaagaagtctggagccctgctacacatt
gaccgtcagcgtatccaggctgtcagtgccagctccggggctgcagagctgcagggtctg
ggcgtcgccgtgtacgaccaggatgtattggagcagggggtcttgcagcaggtggaccag
gccatacacgaggccagccaggctgcagccaaggctgaggcagagaaggagtaccagtct
gtactggacgatgtcaggtcatgtatggcagctctgaagcacattaataagatcatagag
cagctgactccctactctacttccagtaaagacataaacaggcagatggagtctgtcaga
cggcagaaagagaacaaggagaagcaattgaagaagatcagagcaaagcagaggagacta
caggccatcctggggggagaggacacacagaagatagaggctgagctactgctggaggac
gatggggacgaagagcccggcccatctactctgggcagtatgctgatgccggcacaggag
acggagtgggaggagctaatccggacaggtcacatgacaccgtttggaacgagggtccct
cagaaggaggagaagaaggaaccacgcaagttcatgctgtctgaaaactctggcttcgac
gcttacctggcagaccaagctaagatggcggtggacaggaagagacctgcaccgctaaag
cagaagaagaagaagactgctgtgggcaaggaagggaaaaagaccaacggagcggctctc
ccctcctactctgtggataacaagctccagaagcgaatgcgtaagctgcagaggaccgct
ctgaaggcccaccctaaggccccgggtaagggggtcacgccgatccccaagcccaggacg
aagcttcaagctgggggagatgagatggacagtgaggggtctgagtacctccccagtgat
gaactgatggaccccgagagagaagagagggaggaccgagatgagggctggggagaggag
gatgaggttgactactatgagttaaagccctacaggaagaagagtgaagaaaaggggggg
aagaaggggaaaaggagagagcgtgacgaggagtattaccctgacagctcagaggaagac
gagggttcagggaaaaagggaaaagagaagctgaagaaagacgacggagatgtggagttc
ttcaaacagaggatacggaggtggaggcggctgcggctgagagagagggaggagaagaga
gagagaggagaggaggagagtgaccagagtgatgctgagtttgatgaaggattcaaagtg
cctggattcctctggaataaactcttcaagtaccagcagacaggtgtgaggtggctgtgg
gagctacactgccagcaggcaggggggatcctgggggatgagatgggtctgggtaaaacc
atccaagtcatcgcattcctggctggcctcagctacagcaaactacgcacacgagggtcc
aactacaggtaccaaggactaggtcctacagtgatagtttgtccagctacagtcatgcac
cagtgggtcagtgagtttcacacctggtggcccccattcagagtggctgtcctacacgac
acgggatccttcacccaaacaaaggagaagttgatatcagagatggcagcatgtcatggt
gtcttgataacgtcgtattcagccgtgaggatcatgcaggagaccctgcagagatacgac
ggctggcactacgttatactggacgagggacacaagatccgcaaccctcacgctggagtt
accactgcctgcaaacagttccgtactcctcataggttcattctatctggcagtcctatg
cagaacaatctgaaggagctgtggagtctatttgactttgtcttccctggcaagctgggc
acgctgcctatttttatggaacagttctctgtacccatcaccatggggggatacagcaac
gcttcacctgtacaggtccagacagcgtataagtgtgcgtgtgttctgagggataccatt
aacccttacctgctcagacggatgaaggctgacgtgaaggccaacctctctttacctgac
aagaatgaacaggttttgttttgcaggctaacagaggagcagcgtgaggtgtatcagagc
tatctggactccaaagaggtctaccaaatactgaatggagatatgcaggtgttctcgggc
ctgatagcactgcgtaagatgtgtaaccacccggacctgttctctgggggtcccaagatc
ctgaagggtgtaccagaggaccaactgactgaagaggaacactttggcttctggaaacgt
tccggcaaactgatggtggtggaatcactgctccgactttggtttaaacagcaacacaga
gtcctgctgttcacacagtccagacagatgttggggatattggaggtgtttgtgagggag
aatggctacacctatgtgaaaatggatggtaccaccaccatcgcctccagacagcctctc
atcgctcgatacaacgaagacaagtctatctttgtgttcttgttgaccaccagagtgggg
gggctgggagtcaacctgaccggagctaacagagtcatcatctatgaccccgactggaac
cctagcactgacacacaggctcgagagcgagcttggaggatcggtcagaaaaaggaggtg
actgtctatagactactgaccgctgggaccattgaggagaagatctaccacaggcaaatc
ttcaaacacttcctgaccaaccgcgttctgaaggaccccaaacagcgacgattcttcaag
tccaacgacatctacgagctgtttaccttatctaaccctgacgggacgcagggcactgag
accagcgctatatttgcaggtacgggttctgatgtccaagctcctaagaagccagtcaga
ccaaggtctaaccatagacactctgtaacaaatcacaatgttggctccactggaggtgga
gcgatcccttccccatcgcccaggcctggggacatgaccacaaccctttgcagtaacatc
tctttcaataagaacaacaggctgaaggacagccaggaagccaaccagggcgaggcagat
attcctattggacagtcccagacagaatgtgacacacagcattctagggaggagggaagc
aatgctcatatactcacagacccagaaagagaccaaaactccattctgccccacaaacac
agagactcacccgtgaccagcccaaacccccacaaacattcacacactaacgccgtcagt
cccagcacacagaaacaccgagacaaacacagtccacacaagcacagagactctcaagga
cccggctccagtccctacaaacaccgggagaagaggaagcactgtgactcgacagtagaa
ggacctaaaaacaaacacgggaaacaggccaaggtcgagggtcatcgcatctcctacctg
gtgaagaagaggagctacaaaggacaagaggagcgcgaggggcagccggataaacaggac
cagagacagagcgacgactatgtactggccaaactcttcaagaagtcgggtatacacagt
gtgatgcagcatgactccatcatggaggcgtctaacccagactttgtcctggtggaagct
gaagctaacagagtagctaaagatgctttgagagctctgaaggtctccagacaacactgt
agactgccctacaaccaacctgccccagctccagccaggaagaggtttggtcagaagaag
aatcctttgctgtctgctcctcctgctacagctgtcccagctcaggacaaatgcaaggac
gcagccatcatcaagaaaaccatcgcaaggaaacccatcccggggggtcacttcagtgga
gaaggggtagaggtgggaggctgttcctctactacggcccccctctcttcctccactcta
ctggcccgcatgaaagctaggaactacctcagcctgccccagagagaaggggatgaagga
ggagaggaagaggggggtgcccgtatcccctcaggccctcctgccccccctacggaacac
gatgagctcctggtggagctgagaaactttgtggcattccagggagctgtggatggacag
gccagcacaaaggaggtcctggaccacttcacccccagactgacccagacccagacccct
gtcttcagagaactactccgaaacatctgtaacttccacagggcaaaggggcaggagggg
acgtggagacttaaacctgactacagataa
DBGET
integrated database retrieval system
