Salmo trutta (river trout): 115194993
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Entry
115194993 CDS
T08542
Name
(RefSeq) collagen alpha-5(IV) chain-like
KO
K06237
collagen type IV alpha
Organism
stru
Salmo trutta (river trout)
Pathway
stru04382
Cornified envelope formation
stru04510
Focal adhesion
stru04512
ECM-receptor interaction
stru04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
stru00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
115194993
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
115194993
09142 Cell motility
04820 Cytoskeleton in muscle cells
115194993
09150 Organismal Systems
09158 Development and regeneration
04382 Cornified envelope formation
115194993
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
stru04147
]
115194993
00536 Glycosaminoglycan binding proteins [BR:
stru00536
]
115194993
Exosome [BR:
stru04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
115194993
Glycosaminoglycan binding proteins [BR:
stru00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
115194993
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
C4
Motif
Other DBs
NCBI-GeneID:
115194993
NCBI-ProteinID:
XP_029610754
Ensembl:
ENSSTUG00000001422
LinkDB
All DBs
Position
5:57843686..57895143
Genome browser
AA seq
1671 aa
AA seq
DB search
MEKQSDTNQALEDWSSPPLACHGCAAGSRCDCSGVKGVKGERGLPGLQGQLGVPGFPGPE
GPIGGRGEKGSDGPSGTGGPKGIRGPPGLPGFPGTPGIPGLPGHDGPPGPKGTAGCNGTK
GERGFPGSPGFPGLEGRLGPPGFPGQKGDPGDVITADRFGQNGGVGLPGLPGVPGDQGPS
GLPGPTGPPGPKGYEGRSGPPGLPGPKGNMGLNFQGPKGDKGNSGLQGPPGPPGQVGEQT
RPSVSSIQKGETGDQGLPGPPGDPGYPGPPGSSGGLKGEKGENGEAGKRGKPGKDGDPGP
AGFPGSKGDPGGPGLPGRDGDRGTKGDRGYPGRPGVQVSNGPPTVGPKGEPGRPGETGRK
GDRGQPGLSGPPGQPGTPGIGGGGQPGLPGFPGERGQKGDEGQPAISIPGNPGRSGAPGL
QGPPGPPGPPGVSNGGINCIGGVPGLPGQQGNIGFQGETGQKGEKGDTCVNCFSSGSSVS
GEIGPPGPPGLPGVPGRPGSKGDRGFPGGPGPSGSSGLPGPQGAPGFPGEKGDPGEATAV
NGVSGDKGDTGFPGPPGLPGLDGRPGRDGGPGAPGPKGTSGSLLVKGERGPPGEPGLQGL
PGDRGATGSPGFGPQGPPGEKGVQGVSGRTGTPGAPGGKGEPGQTIAEKGLPGPRGQDGD
PGLPGNPGNPGGPGQPGFPGSQGPKGDPGLSGIGLPGPSGAKGFPGSPGLPGGPGAPGRP
GVDGFPGQPGAPGAKGEPGFGLPGPQGSPGFPGDKGLPGPKGDSGFPGNPGLPGRSGFDG
GPGAKGDSGIPGRPGARGPQGSPAIGSQGVPGPVGPPGPIGAPGYSGNNGEKGDPGLPGP
GITGLPGDRGSPGFPGSPGEVGPQGNPGGPGRDGIPGLPGGKGDMGVMGTPGSLGSPGNP
GGPGFPGPKGDDGFPGRPGGTGSPGLKGDRGDPGLVGLPGPSHSPTSIKGAKGDAGEPGL
RGQPGQKGISGLPGDAGISGQDGRPGFPGPQGPKGDMGIPGVSGSPGSQGLKGNMGEMGF
PGPTGAKGTPGQQGQSGVPGSSGAPGFPGAKGDPGSPGFGATGATGPKGEPGRSGFPGQN
GVKGTPGTPGLPGFPGSPGAKGDPGLPGFQGSPGIPGPKGLDGTPGNPGPAGGPGRPGEN
GRAGSPGFPGDKGQAGRDGIPGPAGVKGDQGLSGFGGPGSPGLPGSPGAKGDFGAPGLPG
NPGFPGQKGEMGFPGQPGSPGSIGPPGAPGVALQGPKGSSGSPGPPGRGGPPGPEGPRGL
GGSGGTKGEKGIPGSSGSPGFPGSKGELGSPGFPGIPGPPGVSGLKGDIGLPGVPGFPGL
KGESGSPGSSGLPGDPGDPGPAGNQGDPGVAATPIMLKGERGPPGPSGLPGNRGSQGPPG
QEGRSGQPGQPGDPGPEGPPGFSGAFGRKGDSGPAGQPGQRGYPGPTGSDGQQGPPGNPG
SASVNHGFLISRHSQADYVPPCPEGTSLIYDGFSLLYVQGNERAHGQDLGTAGSCLRRFS
TMPFMFCNINNVCNFASRNDYSYWLSTPMPMPMSMAPITGEGIKPYISRCAVCEAPAMVI
AVHSQTIQIPTCPNYWEPLWIGYSFMMHTSAGAEGSGQALASPGSCLEEFRSSPFIECHG
RGTCNYYGNTYSFWLATVDQSNMFRKPQSETLKAGNLSTRISRCVVCMKRT
NT seq
5016 nt
NT seq
+upstream
nt +downstream
nt
atggagaaacagagtgacaccaaccaggccctggaggactggagtagcccacccctggcg
tgtcatggatgtgcagcgggatcacggtgtgactgcagcggagtgaaaggagtcaagggt
gaaaggggtttaccaggactacagggtcagctgggcgtaccggggttccccggacctgag
gggcccatcggtggcagaggagagaagggtagtgacggaccttcagggactggaggtcca
aaggggataagaggacctcccggactgcctggattccccggaacaccaggaattccaggt
ctcccgggacatgacggccccccaggccccaaaggaactgcaggctgcaacgggacaaag
ggtgagcgaggattccctggaagtccaggcttccccggactggagggtcgattgggtcca
cctggttttccaggacaaaagggagacccaggtgatgtcatcacagctgaccgtttcgga
cagaatggaggtgtaggtctgcctggcctgcctggagttcctggtgaccaaggcccctcg
ggattgcccggtcctaccggccctcccggccccaaaggttatgagggtcgttccgggcct
cctggtcttcctggtcctaagggaaacatggggttgaacttccaaggtcccaaaggagat
aagggtaattcaggtctgcaggggcctcccggaccaccaggacaagttggggagcaaaca
agaccctcagtgtcgagtattcagaaaggagagacgggtgatcaaggtttacctggtcca
cctggtgatcctggttatcctggaccccctggttcatctggtggtttgaagggagagaaa
ggagaaaacggagaagcaggtaaacggggcaaaccagggaaggatggagacccaggtcct
gctggattccctggtagtaagggagacccaggtgggccaggtctgccaggtcgggatggt
gacaggggtaccaaaggtgaccgtggatatcctggacgtccaggcgtgcaggtgagcaat
ggtccacctacagttgggcctaaaggagaacctgggcgtcctggggagacaggaaggaaa
ggagacagaggacaacctggtctctcgggtcctccaggtcaaccaggaaccccaggtatc
ggaggtggaggccagcctggtttaccaggcttcccaggagagaggggccagaagggagac
gagggccagccagccatctccatccccgggaacccaggacgaagtggcgcccctggtctg
cagggacctccaggacctcctgggcccccaggggtctccaatgggggtattaactgtata
ggaggggtccccgggttaccaggacaacaagggaatataggattccaaggagagaccgga
cagaaaggtgagaagggagacacctgtgttaactgtttctccagcggcagcagtgtctct
ggagaaataggccctcccggacctcctgggctcccaggtgtaccaggaagaccagggtct
aaaggtgacagaggattcccaggcggcccagggccctcaggttcttctggtttgcccggt
ccccagggtgctcctggtttcccaggagagaagggtgacccaggtgaggctactgctgtg
aatggggtgagcggagacaagggagacacagggttccccggaccccctggcctgcctggt
ctggacggaagacctggtcgcgatggaggtcctggagctcctggacccaaaggaacatct
ggatctctattagtgaagggtgagcgaggacctccaggtgagcccggtttgcagggtctc
ccaggtgacaggggtgccaccggatccccaggcttcggcccccaggggccccccggagag
aagggtgtccaaggtgtctcagggagaacgggaacacctggagcaccaggaggtaaaggg
gagccgggtcagacgatagcagagaagggcctcccaggaccccgaggacaggatggagac
cccggtctacctggaaacccaggtaaccccggcgggccaggacagcccggtttccccggg
tcacaaggtcccaagggtgatcctggcctctctggcatcggactgccaggaccctccgga
gctaaaggattccctggctcacctggtttgccaggtggtcccggagctccaggtagacca
ggtgtggacgggttccccggacagccaggtgcacctggagctaagggagagccaggcttc
gggctgccaggtccccagggctccccaggcttccccggagataaaggattacctggaccc
aaaggagactctggtttccctggcaaccccggcttgccaggacgatccggctttgacggc
ggccctggtgccaaaggtgactctggtatccctggtagacccggagctcgtggccctcaa
ggatcacccgccatcggctctcagggtgtccccggccctgtcggacccccaggacctatt
ggtgctccaggatactcaggcaacaatggagagaagggagaccccgggcttcctggcccg
ggcattacagggttgccaggagacagaggaagtcccggtttccccggcagccccggggaa
gttggacctcagggtaaccccggtggccctggccgcgatggaatacctggcctgcctggt
ggtaaaggagacatgggtgtaatgggaactcctggatctctgggatcccctggcaacccc
ggagggcccggcttccctggacctaaaggtgacgatggtttcccagggcgaccaggtggg
accggcagtccaggtctgaagggagacaggggagaccccggtctcgtaggactcccaggt
cccagccactctcccacttcaatcaagggagccaaaggagatgcaggagaaccaggtttg
cgaggtcagccaggtcagaagggtatttccggtctccctggagacgctggtatatcagga
caggatggaagacctgggttccctggacctcaaggtcccaaaggagacatgggtatccct
ggagtatcaggctcaccaggaagccaaggacttaaaggcaacatgggagagatgggcttc
ccaggacccacaggagcgaaaggaactccaggtcagcaaggtcagtcgggtgtacccggt
agttcaggagcaccagggttccccggagctaaaggagacccaggttcccccggatttggt
gccacaggagctacaggtcccaagggtgagcccggtcggtcgggattccccggacaaaat
ggagtgaaaggaactcccggaacaccaggtcttccagggtttcccggcagccccggagcc
aaaggcgaccccggcctcccaggattccaaggttctcccggtattcccgggcctaagggt
ctggatggtacccctggtaaccccggtcccgccggaggccccggccgaccgggagagaat
ggccgtgccggatcacctgggttcccaggcgacaagggtcaggcaggtcgcgacggaatc
cctggaccagcgggagtcaaaggagaccaaggtctttctggttttggcggccccggttca
cctggtctcccagggtcaccaggtgctaagggagattttggcgcccctggtcttccaggt
aaccctgggttccctggtcagaagggagagatgggtttccccggccaacctgggtccccc
gggagcatcgggccccctggtgcccccggtgtggccctccaggggcccaagggtagcagt
ggatcccccggcccccctgggagaggaggtcctcctggacccgagggtccccgtggcctt
gggggcagcggagggaccaaaggtgagaagggaatccctggatcttctggatcccctggt
ttccccggatcgaagggagaattgggatcgcccggattcccaggtattcctggccctcct
ggtgtcagcgggctgaagggagacatcggacttcccggcgttcccggattcccaggacta
aagggagagtctggaagccctggatcatccggtctccctggagatcctggagatcctggt
cctgctggaaaccaaggtgacccaggtgtcgctgcgacccccatcatgctgaagggagaa
cgtggcccccccggcccttcaggtctgccaggcaaccgtggctcccaaggaccccccgga
caggagggacgctcaggtcagcccggtcaaccaggggaccccggtcctgaaggaccccca
ggattcagtggagccttcggccgcaagggagactctggacccgccggacagccaggtcag
cgtgggtacccaggtcccactggttcagatggtcagcagggccccccgggtaaccccggc
tcagcctctgtgaaccatggcttcctgatctctagacacagccaggctgactatgtccct
ccctgccccgaagggaccagcctcatctacgacggattctctctgctctacgtacagggc
aacgagagggcacacggacaggacctaggtactgctggtagttgcctgcgtcggttcagc
accatgccattcatgttctgtaacatcaacaacgtgtgtaacttcgcctcccgtaacgac
tactcctattggctgtctacacccatgcccatgcccatgagtatggcccccatcacagga
gaaggcatcaaaccttatatcagcaggtgtgcagtgtgtgaggcccctgccatggtgatc
gctgtgcacagtcaaaccattcagatccccacctgtcccaactactgggaaccactgtgg
atcggatactccttcatgatgcacaccagtgcaggtgctgagggctctggtcaggctctg
gcctctcctggctcctgtctagaggagttccggagctctcccttcatcgagtgtcacggc
cgagggacctgcaactactatggcaacacatacagcttctggctggccactgtcgaccaa
tcaaacatgttcaggaagccacagtcagagacgctgaaggcaggtaacctatcgacgcgc
attagccgctgtgtggtctgtatgaagaggacgtaa
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