Salmo trutta (river trout): 115194993
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Entry
115194993 CDS
T08542
Name
(RefSeq) collagen alpha-5(IV) chain-like
KO
K06237
collagen type IV alpha
Organism
stru
Salmo trutta (river trout)
Pathway
stru04510
Focal adhesion
stru04512
ECM-receptor interaction
stru04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
stru00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
115194993
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
115194993
09142 Cell motility
04820 Cytoskeleton in muscle cells
115194993
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
stru04147
]
115194993
00536 Glycosaminoglycan binding proteins [BR:
stru00536
]
115194993
Exosome [BR:
stru04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
115194993
Glycosaminoglycan binding proteins [BR:
stru00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
115194993
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
C4
Motif
Other DBs
NCBI-GeneID:
115194993
NCBI-ProteinID:
XP_029610754
Ensembl:
ENSSTUG00000001422
LinkDB
All DBs
Position
5:57843686..57895143
Genome browser
AA seq
1671 aa
AA seq
DB search
MEKQSDTNQALEDWSSPPLACHGCAAGSRCDCSGVKGVKGERGLPGLQGQLGVPGFPGPE
GPIGGRGEKGSDGPSGTGGPKGIRGPPGLPGFPGTPGIPGLPGHDGPPGPKGTAGCNGTK
GERGFPGSPGFPGLEGRLGPPGFPGQKGDPGDVITADRFGQNGGVGLPGLPGVPGDQGPS
GLPGPTGPPGPKGYEGRSGPPGLPGPKGNMGLNFQGPKGDKGNSGLQGPPGPPGQVGEQT
RPSVSSIQKGETGDQGLPGPPGDPGYPGPPGSSGGLKGEKGENGEAGKRGKPGKDGDPGP
AGFPGSKGDPGGPGLPGRDGDRGTKGDRGYPGRPGVQVSNGPPTVGPKGEPGRPGETGRK
GDRGQPGLSGPPGQPGTPGIGGGGQPGLPGFPGERGQKGDEGQPAISIPGNPGRSGAPGL
QGPPGPPGPPGVSNGGINCIGGVPGLPGQQGNIGFQGETGQKGEKGDTCVNCFSSGSSVS
GEIGPPGPPGLPGVPGRPGSKGDRGFPGGPGPSGSSGLPGPQGAPGFPGEKGDPGEATAV
NGVSGDKGDTGFPGPPGLPGLDGRPGRDGGPGAPGPKGTSGSLLVKGERGPPGEPGLQGL
PGDRGATGSPGFGPQGPPGEKGVQGVSGRTGTPGAPGGKGEPGQTIAEKGLPGPRGQDGD
PGLPGNPGNPGGPGQPGFPGSQGPKGDPGLSGIGLPGPSGAKGFPGSPGLPGGPGAPGRP
GVDGFPGQPGAPGAKGEPGFGLPGPQGSPGFPGDKGLPGPKGDSGFPGNPGLPGRSGFDG
GPGAKGDSGIPGRPGARGPQGSPAIGSQGVPGPVGPPGPIGAPGYSGNNGEKGDPGLPGP
GITGLPGDRGSPGFPGSPGEVGPQGNPGGPGRDGIPGLPGGKGDMGVMGTPGSLGSPGNP
GGPGFPGPKGDDGFPGRPGGTGSPGLKGDRGDPGLVGLPGPSHSPTSIKGAKGDAGEPGL
RGQPGQKGISGLPGDAGISGQDGRPGFPGPQGPKGDMGIPGVSGSPGSQGLKGNMGEMGF
PGPTGAKGTPGQQGQSGVPGSSGAPGFPGAKGDPGSPGFGATGATGPKGEPGRSGFPGQN
GVKGTPGTPGLPGFPGSPGAKGDPGLPGFQGSPGIPGPKGLDGTPGNPGPAGGPGRPGEN
GRAGSPGFPGDKGQAGRDGIPGPAGVKGDQGLSGFGGPGSPGLPGSPGAKGDFGAPGLPG
NPGFPGQKGEMGFPGQPGSPGSIGPPGAPGVALQGPKGSSGSPGPPGRGGPPGPEGPRGL
GGSGGTKGEKGIPGSSGSPGFPGSKGELGSPGFPGIPGPPGVSGLKGDIGLPGVPGFPGL
KGESGSPGSSGLPGDPGDPGPAGNQGDPGVAATPIMLKGERGPPGPSGLPGNRGSQGPPG
QEGRSGQPGQPGDPGPEGPPGFSGAFGRKGDSGPAGQPGQRGYPGPTGSDGQQGPPGNPG
SASVNHGFLISRHSQADYVPPCPEGTSLIYDGFSLLYVQGNERAHGQDLGTAGSCLRRFS
TMPFMFCNINNVCNFASRNDYSYWLSTPMPMPMSMAPITGEGIKPYISRCAVCEAPAMVI
AVHSQTIQIPTCPNYWEPLWIGYSFMMHTSAGAEGSGQALASPGSCLEEFRSSPFIECHG
RGTCNYYGNTYSFWLATVDQSNMFRKPQSETLKAGNLSTRISRCVVCMKRT
NT seq
5016 nt
NT seq
+upstream
nt +downstream
nt
atggagaaacagagtgacaccaaccaggccctggaggactggagtagcccacccctggcg
tgtcatggatgtgcagcgggatcacggtgtgactgcagcggagtgaaaggagtcaagggt
gaaaggggtttaccaggactacagggtcagctgggcgtaccggggttccccggacctgag
gggcccatcggtggcagaggagagaagggtagtgacggaccttcagggactggaggtcca
aaggggataagaggacctcccggactgcctggattccccggaacaccaggaattccaggt
ctcccgggacatgacggccccccaggccccaaaggaactgcaggctgcaacgggacaaag
ggtgagcgaggattccctggaagtccaggcttccccggactggagggtcgattgggtcca
cctggttttccaggacaaaagggagacccaggtgatgtcatcacagctgaccgtttcgga
cagaatggaggtgtaggtctgcctggcctgcctggagttcctggtgaccaaggcccctcg
ggattgcccggtcctaccggccctcccggccccaaaggttatgagggtcgttccgggcct
cctggtcttcctggtcctaagggaaacatggggttgaacttccaaggtcccaaaggagat
aagggtaattcaggtctgcaggggcctcccggaccaccaggacaagttggggagcaaaca
agaccctcagtgtcgagtattcagaaaggagagacgggtgatcaaggtttacctggtcca
cctggtgatcctggttatcctggaccccctggttcatctggtggtttgaagggagagaaa
ggagaaaacggagaagcaggtaaacggggcaaaccagggaaggatggagacccaggtcct
gctggattccctggtagtaagggagacccaggtgggccaggtctgccaggtcgggatggt
gacaggggtaccaaaggtgaccgtggatatcctggacgtccaggcgtgcaggtgagcaat
ggtccacctacagttgggcctaaaggagaacctgggcgtcctggggagacaggaaggaaa
ggagacagaggacaacctggtctctcgggtcctccaggtcaaccaggaaccccaggtatc
ggaggtggaggccagcctggtttaccaggcttcccaggagagaggggccagaagggagac
gagggccagccagccatctccatccccgggaacccaggacgaagtggcgcccctggtctg
cagggacctccaggacctcctgggcccccaggggtctccaatgggggtattaactgtata
ggaggggtccccgggttaccaggacaacaagggaatataggattccaaggagagaccgga
cagaaaggtgagaagggagacacctgtgttaactgtttctccagcggcagcagtgtctct
ggagaaataggccctcccggacctcctgggctcccaggtgtaccaggaagaccagggtct
aaaggtgacagaggattcccaggcggcccagggccctcaggttcttctggtttgcccggt
ccccagggtgctcctggtttcccaggagagaagggtgacccaggtgaggctactgctgtg
aatggggtgagcggagacaagggagacacagggttccccggaccccctggcctgcctggt
ctggacggaagacctggtcgcgatggaggtcctggagctcctggacccaaaggaacatct
ggatctctattagtgaagggtgagcgaggacctccaggtgagcccggtttgcagggtctc
ccaggtgacaggggtgccaccggatccccaggcttcggcccccaggggccccccggagag
aagggtgtccaaggtgtctcagggagaacgggaacacctggagcaccaggaggtaaaggg
gagccgggtcagacgatagcagagaagggcctcccaggaccccgaggacaggatggagac
cccggtctacctggaaacccaggtaaccccggcgggccaggacagcccggtttccccggg
tcacaaggtcccaagggtgatcctggcctctctggcatcggactgccaggaccctccgga
gctaaaggattccctggctcacctggtttgccaggtggtcccggagctccaggtagacca
ggtgtggacgggttccccggacagccaggtgcacctggagctaagggagagccaggcttc
gggctgccaggtccccagggctccccaggcttccccggagataaaggattacctggaccc
aaaggagactctggtttccctggcaaccccggcttgccaggacgatccggctttgacggc
ggccctggtgccaaaggtgactctggtatccctggtagacccggagctcgtggccctcaa
ggatcacccgccatcggctctcagggtgtccccggccctgtcggacccccaggacctatt
ggtgctccaggatactcaggcaacaatggagagaagggagaccccgggcttcctggcccg
ggcattacagggttgccaggagacagaggaagtcccggtttccccggcagccccggggaa
gttggacctcagggtaaccccggtggccctggccgcgatggaatacctggcctgcctggt
ggtaaaggagacatgggtgtaatgggaactcctggatctctgggatcccctggcaacccc
ggagggcccggcttccctggacctaaaggtgacgatggtttcccagggcgaccaggtggg
accggcagtccaggtctgaagggagacaggggagaccccggtctcgtaggactcccaggt
cccagccactctcccacttcaatcaagggagccaaaggagatgcaggagaaccaggtttg
cgaggtcagccaggtcagaagggtatttccggtctccctggagacgctggtatatcagga
caggatggaagacctgggttccctggacctcaaggtcccaaaggagacatgggtatccct
ggagtatcaggctcaccaggaagccaaggacttaaaggcaacatgggagagatgggcttc
ccaggacccacaggagcgaaaggaactccaggtcagcaaggtcagtcgggtgtacccggt
agttcaggagcaccagggttccccggagctaaaggagacccaggttcccccggatttggt
gccacaggagctacaggtcccaagggtgagcccggtcggtcgggattccccggacaaaat
ggagtgaaaggaactcccggaacaccaggtcttccagggtttcccggcagccccggagcc
aaaggcgaccccggcctcccaggattccaaggttctcccggtattcccgggcctaagggt
ctggatggtacccctggtaaccccggtcccgccggaggccccggccgaccgggagagaat
ggccgtgccggatcacctgggttcccaggcgacaagggtcaggcaggtcgcgacggaatc
cctggaccagcgggagtcaaaggagaccaaggtctttctggttttggcggccccggttca
cctggtctcccagggtcaccaggtgctaagggagattttggcgcccctggtcttccaggt
aaccctgggttccctggtcagaagggagagatgggtttccccggccaacctgggtccccc
gggagcatcgggccccctggtgcccccggtgtggccctccaggggcccaagggtagcagt
ggatcccccggcccccctgggagaggaggtcctcctggacccgagggtccccgtggcctt
gggggcagcggagggaccaaaggtgagaagggaatccctggatcttctggatcccctggt
ttccccggatcgaagggagaattgggatcgcccggattcccaggtattcctggccctcct
ggtgtcagcgggctgaagggagacatcggacttcccggcgttcccggattcccaggacta
aagggagagtctggaagccctggatcatccggtctccctggagatcctggagatcctggt
cctgctggaaaccaaggtgacccaggtgtcgctgcgacccccatcatgctgaagggagaa
cgtggcccccccggcccttcaggtctgccaggcaaccgtggctcccaaggaccccccgga
caggagggacgctcaggtcagcccggtcaaccaggggaccccggtcctgaaggaccccca
ggattcagtggagccttcggccgcaagggagactctggacccgccggacagccaggtcag
cgtgggtacccaggtcccactggttcagatggtcagcagggccccccgggtaaccccggc
tcagcctctgtgaaccatggcttcctgatctctagacacagccaggctgactatgtccct
ccctgccccgaagggaccagcctcatctacgacggattctctctgctctacgtacagggc
aacgagagggcacacggacaggacctaggtactgctggtagttgcctgcgtcggttcagc
accatgccattcatgttctgtaacatcaacaacgtgtgtaacttcgcctcccgtaacgac
tactcctattggctgtctacacccatgcccatgcccatgagtatggcccccatcacagga
gaaggcatcaaaccttatatcagcaggtgtgcagtgtgtgaggcccctgccatggtgatc
gctgtgcacagtcaaaccattcagatccccacctgtcccaactactgggaaccactgtgg
atcggatactccttcatgatgcacaccagtgcaggtgctgagggctctggtcaggctctg
gcctctcctggctcctgtctagaggagttccggagctctcccttcatcgagtgtcacggc
cgagggacctgcaactactatggcaacacatacagcttctggctggccactgtcgaccaa
tcaaacatgttcaggaagccacagtcagagacgctgaaggcaggtaacctatcgacgcgc
attagccgctgtgtggtctgtatgaagaggacgtaa
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