Salmo trutta (river trout): 115195058
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Entry
115195058 CDS
T08542
Symbol
cpsf3
Name
(RefSeq) cleavage and polyadenylation specificity factor subunit 3
KO
K14403
cleavage and polyadenylation specificity factor subunit 3 [EC:3.1.27.-]
Organism
stru
Salmo trutta (river trout)
Pathway
stru03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
stru00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
115195058 (cpsf3)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
stru03021
]
115195058 (cpsf3)
03019 Messenger RNA biogenesis [BR:
stru03019
]
115195058 (cpsf3)
Transcription machinery [BR:
stru03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
115195058 (cpsf3)
Messenger RNA biogenesis [BR:
stru03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
115195058 (cpsf3)
U7-dependent histone pre-mRNA processing factors
115195058 (cpsf3)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
CPSF73-100_C
Beta-Casp
Lactamase_B_6
Lactamase_B
RMMBL
Anti-Pycsar_Apyc1
Lactamase_B_2
Lactamase_B_3
Beta_lactamase3
Gp58
Motif
Other DBs
NCBI-GeneID:
115195058
NCBI-ProteinID:
XP_029610785
UniProt:
A0A674BKP9
LinkDB
All DBs
Position
1:complement(35505545..35513423)
Genome browser
AA seq
690 aa
AA seq
DB search
MAAKRKADLSVPAEESDQLLIRPLGAGQEVGRSCIILEFKGRKIMLDCGIHPGLEGMDAL
PYIDLIDPAEIDLLLISHFHLDHCGALPWFLQKTSFKGRTFMTHATKAIYRWLLSDYVKV
SNISADDMLYTETDLEESMDKIETINFHEVKEVAGIKFWCYHAGHVLGAAMFMIEIAGVK
ILYTGDFSRQEDRHLMAAEIPSVKPDILITESTYGTHIHEKREEREARFCNTIHDIVNRE
GRCLIPVFALGRAQELLLILDEYWQNHPELHDIPIYYASSLAKKCMAVYQTYVNAMNDKI
RKAINVNNPFVFKHISNLKSMDHFDDIGPSVVMASPGMMQSGLSRELFESWCTDKRNGVI
IAGYSVEGTLAKHIMSEPEEITTMSGQKLQLKMSVDYISFSAHTDYQQTSEFIRALKPPH
VILVHGEQNEMARLKAALIREYEDNDEVHIEVHNPRNTEAVTLNFRGEKLAKVMGSLADK
KCQQGQRVSGILVKRNFSYHILTPSDLSNYTDLAMSTVKQTQAIPFTGPISLLASHLRNL
AGEVEEVESAEKITLRIFKNVTLVHEAGMVVLEWIANPLNDMYADAVTTVVLEVQSNPKA
QKVMEHKKEGIELDVFQQRLEIMLLDMFGEDCVDFKDNKNLTVTVDGNTAFICPETRTVQ
YEEGSAEDETLREMVELAVQRLYDALNPAI
NT seq
2073 nt
NT seq
+upstream
nt +downstream
nt
atggcggcgaaacgcaaagctgatttatcggtgcctgcagaggaaagtgatcagctcctc
atcagaccacttggagctgggcaggaggtgggaaggtcatgcatcattctggagttcaag
ggacggaaaatcatgctggactgtggaatccacccaggtttggaaggaatggatgctctt
ccctatattgacttgatcgatcctgctgagatagacctgcttcttatcagccatttccac
ttggaccactgtggagccttgccttggtttctccagaagaccagtttcaaaggaaggacc
ttcatgacccacgccaccaaagctatttaccgctggctgctgtctgattatgtcaaagtc
agtaacatctcagccgacgacatgctgtacacagagacagacttggaggagagcatggac
aagatcgagactatcaacttccacgaggtgaaggaggtggccggcatcaagttctggtgt
taccatgccggtcacgtcctgggggcagccatgttcatgatcgagatagctggcgtgaag
atcctctacacaggtgacttttcccgacaggaggacaggcatctgatggcagcagagatc
cccagcgtcaagcctgacatcctcattactgagtccacgtatggaacacacatccatgag
aagagggaggagcgggaggcccggttctgcaacacaatccacgacatcgtcaacagagag
ggccgctgtctcatccccgtgttcgccttgggccgagcccaggaactgctgctcatcctg
gacgagtactggcagaaccacccagagctccatgacattcccatctactacgcgtcgtct
ctggccaagaagtgcatggccgtctaccagacctacgtcaacgctatgaacgacaagatc
cgcaaggccattaacgtcaacaaccccttcgtcttcaagcacatcagcaacctcaagagc
atggaccactttgatgacatcgggcccagtgtggtgatggcctctccaggtatgatgcag
agcggtctgtcgagagagctgtttgagagctggtgcaccgataagaggaacggcgtcatc
atcgccggctactccgtggagggtaccctcgccaagcacattatgtcagagccagaggag
atcaccaccatgtcaggccagaagctgcagctgaagatgtctgtggactacatctctttt
tcagcgcacactgactaccagcagaccagcgagttcatcagggctcttaaaccccctcat
gtgatcctggtgcacggggagcagaatgagatggcccgtctgaaagccgctctgatcagg
gagtacgaggacaatgacgaggtccacatagaggtgcacaacccccggaacactgaggcc
gtcacactcaacttcagaggagagaagctggctaaggtgatgggctccctggctgataag
aagtgtcagcagggtcagagggtatctgggatcctggtcaaacgcaacttcagctaccac
atcctcaccccctcagatctgtccaactatacagacctggccatgagcacagtgaagcaa
acccaggccattcccttcaccggacccatctctctgctggccagccatctacgcaacctg
gcaggggaggtggaggaggtggagtctgcagagaaaatcacactcaggatcttcaagaat
gtcacactggtgcacgaggctggcatggtggttttagagtggatcgccaaccctctgaat
gacatgtatgctgatgcggtcaccacagtggttctggaggtccagtccaaccctaaagca
cagaaagttatggaacacaagaaagaaggtatagaactggatgttttccagcagaggctg
gagattatgcttcttgacatgtttggggaggactgtgtggacttcaaggacaataagaac
ctgacggtaacagtggacgggaatactgccttcatctgcccagaaaccagaacggtgcag
tatgaggagggcagtgctgaagatgagaccctgagagagatggtggagctggctgtgcag
aggctctatgatgctctcaaccctgccatctga
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