Salmo trutta (river trout): 115195401
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Entry
115195401 CDS
T08542
Name
(RefSeq) nucleoporin p58/p45 isoform X1
KO
K14307
nucleoporin p58/p45
Organism
stru
Salmo trutta (river trout)
Pathway
stru03013
Nucleocytoplasmic transport
Brite
KEGG Orthology (KO) [BR:
stru00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
115195401
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
stru03019
]
115195401
Messenger RNA biogenesis [BR:
stru03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Nuclear pore complex
115195401
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Nucleoporin_FG2
NUP58_M
His-Xaa-Ser_sys
YcaO_C
Nup49_C
MSC_0620_UU052
HpsJ
Motif
Other DBs
NCBI-GeneID:
115195401
NCBI-ProteinID:
XP_029611080
LinkDB
All DBs
Position
6:complement(10620892..10641032)
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AA seq
573 aa
AA seq
DB search
MSGFNFGSGSTNTGGGFSFGGTASTPAAAGTGGFTLGGGLGGAASTTTTSSLGLGVSLFA
QKPTGGFSFNTPASGAPVASTAPTMGFSMAFNKPSASAQPFSLTAASSAPSGAGLTLGSV
LTSTAPQQGATGFALNLGGVAASTAPSTGLSLGSSMFSNMATTGLAQTTLGSGGLTLGSL
VSTSTAISTAPSLGLGGVDFSTSSEKKSDKSLGASPQDSKALKDENLPPVICQDVDHFQK
FVKEQKQVHEEISRMSFKAMLKVQDDIKSLKQLLSVSASGLQRNALAIGHLKMEAALELK
NADIALRTQKTPPGLQHENTAPYDYFRCLVDQFEVQLQQYRQQIEELENHLSTQGSGPHI
TPQDLSLAMQKLYQTFVCLAAQLQSVHENVKILKQQYLGYRRAFLEDSTDVFESKRAASK
KWKSATRITIGPAPFGSVPNAAAVAMAATLSQQQPGPGRQVPLGSGLGNPFASGVGSSTG
SSGLGVFGGGPGFGGVATGGSFGFSSASKASGGSLSAGFGSSSSSGFNFSNPGLNASAGL
TFGVSNPTATGFGTGGPLLQLKKPPVGNKRGKR
NT seq
1722 nt
NT seq
+upstream
nt +downstream
nt
atgtcaggctttaatttcgggtctggatccacgaacactggcggaggattttcgtttgga
ggcactgccagtaccccagctgcagcaggtacgggtggctttactctgggtggaggtctg
ggtggtgcagcctccaccaccaccacctcttctctgggcctgggggtgtccctgtttgca
cagaaacctactggggggttctcctttaacactcctgcctcaggtgccccagtagcctct
acagcccctaccatgggctttagtatggccttcaataaaccttctgcctcggcccaaccc
ttctccctcactgctgcctcctcggccccctcaggggcaggactgacgctaggctccgtc
ctcacctccaccgctccacagcaaggagccacaggatttgctctcaacctagggggtgtg
gctgcgagtacagccccatccacaggtctatcgttgggttccagtatgttctctaacatg
gctactactggtttggcccagaccactcttggttcaggggggttgacgttaggttcccta
gtctctacgtcgacggcgatctcaacggcccccagccttggactgggcggagttgacttc
agcacttcctcagagaaaaagagcgacaaatcattaggggccagcccacaggacagtaaa
gcgttgaaagatgaaaacttgcctccagtcatctgtcaggatgtagaccatttccagaag
tttgtgaaggagcagaagcaggttcacgaggagatcagcaggatgtcttttaaagccatg
ctgaaggttcaggatgacatcaagagtctcaaacagctgctgtctgtcagcgcctcggga
ctacagagaaacgccctggctataggtcacctgaagatggaggctgcgctggagttgaag
aatgcagacatagctctacggactcagaagactccccctggactccaacatgaaaacaca
gctccctatgattatttccggtgtttagtggatcagtttgaggtccagctgcagcagtac
agacagcagatagaggagctggagaatcacctctctacacagggcagtggaccacacatc
acaccacaggatctgtctctggccatgcagaagttgtaccagacgtttgtttgtctggct
gctcagctccagtcagtacacgagaacgtcaagatcctgaagcagcagtacctgggatac
cgacgggccttcctggaggactccacggatgttttcgagtccaagcgggcggccagtaag
aagtggaagagcgccacacgcatcacaatcggccccgccccgttcggcagtgtccctaac
gcagcagcagtcgccatggcagccacgctgagccagcagcagcccggcccagggagacag
gtgcccctggggtctggcttgggaaacccctttgcctcaggagtgggctctagcacaggc
tcatcaggccttggagtatttggtgggggtccaggtttcgggggggttgcgacggggggc
tcatttggtttctcctccgccagcaaggcctcgggagggagcctgagcgcaggttttggt
agcagcagtagttcggggtttaacttcagtaaccccgggctcaacgcgtctgccggcctg
acgtttggcgtgtccaaccctaccgccacgggcttcggcacgggaggtccactgctgcag
ctcaagaagcccccggtgggaaacaagaggggcaagagatag
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