Salmo trutta (river trout): 115195519
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Entry
115195519 CDS
T08542
Name
(RefSeq) interferon regulatory factor 4-like isoform X1
KO
K04693
interferon regulatory factor 9
Organism
stru
Salmo trutta (river trout)
Pathway
stru04217
Necroptosis
stru04620
Toll-like receptor signaling pathway
stru04621
NOD-like receptor signaling pathway
stru04625
C-type lectin receptor signaling pathway
stru05168
Herpes simplex virus 1 infection
Brite
KEGG Orthology (KO) [BR:
stru00001
]
09140 Cellular Processes
09143 Cell growth and death
04217 Necroptosis
115195519
09150 Organismal Systems
09151 Immune system
04620 Toll-like receptor signaling pathway
115195519
04621 NOD-like receptor signaling pathway
115195519
04625 C-type lectin receptor signaling pathway
115195519
09160 Human Diseases
09172 Infectious disease: viral
05168 Herpes simplex virus 1 infection
115195519
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
stru03000
]
115195519
Transcription factors [BR:
stru03000
]
Eukaryotic type
Helix-turn-helix
Tryptophan clusters interferon-regulating factors
115195519
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SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
IRF
IRF-3
Motif
Other DBs
NCBI-GeneID:
115195519
NCBI-ProteinID:
XP_029611287
Ensembl:
ENSSTUG00000012480
LinkDB
All DBs
Position
6:15071797..15076996
Genome browser
AA seq
431 aa
AA seq
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MASGKIRSTRRLRAWMVEQVSSGKYPGLVWDDDDKTMFRIPWKHAGKQDFRSEVDGAIFK
AWAVFKGKLSEGGHADPASWKTRLRVALNKSPEFREEPERSQLEISEPYKVYRLVPINEQ
ALGSVDMKVQARAGGRKRRSRDSDIEEEEVKVKQMKEVTTSLPITMEIEESVLTIQLDQV
DQPSVMVKSAGTVNEIQVNFTIETVPPPGARDSFHVLVKYMGEEVLKRGVMGSDVRIAYL
PSSPVPPTLMVAGFPRIPLPDPPSTLTSSIGPQFQALSTLLPFLEKGVILTSTRTGVYAK
RYCQGQVFWTGPHSATAGPQKMNHAVEPVRLFDREAFRMELDHFSSYGGDPPQCGFTLCF
SDKEDPSSKLIITQITLPWAQQQVKEAEDFRESMTYFRNITSESGEVTINLVSGSLLSEI
LGTSLPETLNI
NT seq
1296 nt
NT seq
+upstream
nt +downstream
nt
atggcatctgggaaaattcgctccacgcgcagactacgcgcttggatggtagaacaggtc
agcagtgggaagtaccctggcctggtatgggacgacgacgacaagaccatgttccgtata
ccatggaaacacgccgggaaacaagacttccgcagcgaagtggatggtgccatcttcaag
gcgtgggcagtgtttaaggggaagttgtctgaggggggtcatgcggaccctgcctcctgg
aagacgcggctgcgagttgctctcaataagagcccggagttcagagaggaacccgagagg
tcacagctggaaatctccgaaccatacaaagtctaccgcctcgtacccatcaacgaacaa
gcattggggagtgttgacatgaaggttcaagccagagcaggggggaggaagagaaggagc
cgcgattcagacatcgaggaagaggaggtgaaggtcaaacagatgaaagaggttaccacc
tccctaccaatcaccatggagattgaggaaagtgttcttacaatccagctagaccaggtt
gatcagccctcggtcatggtgaagagtgctgggacagtcaatgagatccaggtgaacttc
acaatcgagaccgtccctccccctggagcccgggactctttccatgtcttagtgaagtac
atgggagaggaggtgcttaaacgtggggtcatgggcagcgatgtccggatcgcctatctg
ccctcctcgcccgttccccccaccctgatggtggctgggttcccccgcatccccctgccc
gaccccccttccaccttaacctccagcatcgggccccagttccaggccctctccaccctg
ctgcccttcttggagaaaggggtgatcctgacctccacgagaacaggggtctatgctaag
cgctactgccagggccaggtgttctggacagggccacattcagccacggcgggaccccag
aagatgaaccatgctgtggagcccgtgcggctcttcgatagagaggctttcagaatggag
ctggaccacttcagcagctacggaggagaccctcctcagtgtggcttcaccttgtgtttc
agtgacaaagaggacccatccagcaaactcatcatcacacagataaccctaccctgggct
cagcagcaggtcaaggaagctgaagacttccgggagtcaatgacctacttccgcaacata
accagcgaatcaggagaggtcaccatcaacctggtatcaggttcattgctatccgagatc
cttgggacgtccctacctgaaaccctaaacatttaa
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