Salmo trutta (river trout): 115195522
Help
Entry
115195522 CDS
T08542
Name
(RefSeq) ranBP-type and C3HC4-type zinc finger-containing protein 1-like
KO
K10630
RanBP-type and C3HC4-type zinc finger-containing protein 1 [EC:
2.3.2.31
]
Organism
stru
Salmo trutta (river trout)
Pathway
stru04217
Necroptosis
stru04621
NOD-like receptor signaling pathway
Brite
KEGG Orthology (KO) [BR:
stru00001
]
09140 Cellular Processes
09143 Cell growth and death
04217 Necroptosis
115195522
09150 Organismal Systems
09151 Immune system
04621 NOD-like receptor signaling pathway
115195522
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
stru04121
]
115195522
Enzymes [BR:
stru01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.31 RBR-type E3 ubiquitin transferase
115195522
Ubiquitin system [BR:
stru04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
RBR proteins
115195522
Multi subunit type E3
LUBAC complex
115195522
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sharpin_PH
Zn_ribbon_RanBP
zf-RING_2
zf-RING_5
ubiquitin
IBR_1
zf-RING_11
Motif
Other DBs
NCBI-GeneID:
115195522
NCBI-ProteinID:
XP_029611296
Ensembl:
ENSSTUG00000012913
LinkDB
All DBs
Position
6:complement(15177775..15190336)
Genome browser
AA seq
710 aa
AA seq
DB search
MSLSSGGWTTHTPPPDPSSSIPGYGASQTGCHTVLMSVRVSVCHSGIRPLCLPGAGDESL
RLQLSMDPGKSGEFRLTLRDTSGTTGRSVSIAEFDLRSVHYEVKSPKCHELSLFMPPHDR
ISFNFRCEQEAQEWATVVMSSLREAHRVSDSPPTDDRQLPLEALETPSSASLPRTEEMCA
ELTRAIEAGDIQAASIYAATLARQQAELKIRPSERSYGDTELSLAVVVEDSSSSCCVTVK
VPPHATIAILKQQVFLEYGFHPRVQRWVIGQCLCADQRSLASYGVRRDGDTAFLYLLSAR
HARLTRQLLQQDQERALLTPATPPLETPSNGPTSQDWRGYSTLPPRLSHSSMGSNGAGPN
GAGAERLNISEIKDLINLEMPQLNKALTPKKSGPQGWACPSCTYINKPTRPGCEICSTDR
PESYTVPGSYKPDPLELHRIQQEKEAVRQYQQAREAERRENFARLVMLDGKDLVPNPDAV
DCRICYLDLQPGEGVLLRECLHCFCRDCLRSVVLMCEDPEVACPYRDDTYACDCTLQGRE
IRALVSEEEYERWLQRGLSVAESRCEGSYHCASPDCAGWCVYEDTVNVFHCPVCNKHNCL
LCKAIHEGMDCKQYQDDLTTRAENDSAARRTRDLLKTLVLSGEAMHCPQCGIIVQKKEGC
DWLRCTVCHSEICWVTRGPRWGPGGPGDTSGGCRCNINNQKCHPKCQNCH
NT seq
2133 nt
NT seq
+upstream
nt +downstream
nt
atgtcgctgagctcaggcgggtggactactcacaccccaccgccggacccgtcctcatct
atccctggctatggggcctcacaaactggctgccataccgtcttgatgtcggtacgggta
tcagtttgccattctggtattcggccgctgtgtcttcctggggcaggtgatgagtcactc
cgtctacagctcagtatggaccccgggaagtccggggaattccgtctcacgctacgggac
accagcggaacaacgggtcggagtgtgtccattgcagagtttgacctgaggtcggtgcac
tatgaggtgaaatcgccaaaatgccacgagctgagtttgttcatgccccctcacgaccgc
atcagcttcaacttccgctgcgagcaggaggctcaggagtgggccaccgtggtaatgtca
tcactcagagaggcacacagggtgtccgacagccctcccaccgatgaccgacaacttcct
ctggaggccttggagacacccagctccgcttccttaccacgcacagaggagatgtgtgct
gagctgaccagggccatcgaggctggtgacatccaggcggcctccatctacgctgccacc
ctggctcgtcagcaggcagagctgaagatccggccctctgagaggagctacggagacaca
gagcttagcttggctgtagtggtcgaagattcttcatcttcctgttgtgtcacagtgaaa
gtccccccccacgcgaccatcgcaatactcaagcagcaggtattcctggagtatggcttc
catccgcgggtgcagcgctgggtgattggccagtgtctgtgtgccgaccagcgctctctc
gcgtcctacggggtgcgtagggatggagacacggccttcctgtacctcctctctgcccgc
cacgcccgtctcacacggcagctgctccagcaggaccaggaaagagccctcctcaccccc
gctacccctcctcttgagaccccaagcaacggccccacatcccaggactggaggggttac
agcaccctgccccccagactgagccacagcagcatgggttcaaatggagcggggccaaat
ggagccggggcagagaggctgaacatcagtgaaatcaaagacctcatcaacctggagatg
ccgcaactcaacaaagcacttacccctaagaaatcagggcctcagggttgggcctgcccc
tcttgcacgtacataaacaagcccacacggcctggctgtgagatctgcagtacagaccgt
ccagagagctatactgttcctgggagctacaaaccagaccctctggagcttcaccgcata
cagcaggagaaagaagctgtccgacagtaccagcaggcgagggaagcagagcggagggag
aactttgcccggctggtgatgttggatggaaaggacctggtgcccaacccagatgctgtg
gactgtaggatctgttacctggacctgcagcctggggagggagtcctgctcagagagtgt
ctccactgtttctgcagagattgcctgcgctcagtagtcctgatgtgtgaggacccggaa
gtggcctgtccttaccgtgatgacacatacgcctgtgactgcaccctgcaggggagagag
atcagagccttggtgtcggaagaggagtacgagcgctggctgcagagaggtttgtctgtg
gcagagtctcgctgtgagggcagttaccactgtgccagcccagactgtgccgggtggtgt
gtgtacgaggacaccgtcaacgtgttccactgccccgtctgcaacaagcacaactgcctg
ctctgcaaggcgattcatgaagggatggactgtaagcagtaccaggatgaccttacgacc
cgtgctgagaacgactcggcagcccgcagaactagagatctgctcaagaccctggtcctc
tccggggaggccatgcattgccctcagtgcggcatcatcgtgcagaaaaaggagggctgt
gattggctgcgttgcactgtctgtcacagtgagatctgctgggtcaccagagggcctcgc
tgggggccagggggtccgggagataccagcggaggctgccgctgcaacatcaacaaccaa
aaatgtcacccaaagtgtcagaactgccactga
DBGET
integrated database retrieval system
