Salmo trutta (river trout): 115196293
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Entry
115196293 CDS
T08542
Name
(RefSeq) runt-related transcription factor 1-like isoform X1
KO
K08367
runt-related transcription factor 1
Organism
stru
Salmo trutta (river trout)
Pathway
stru04530
Tight junction
Brite
KEGG Orthology (KO) [BR:
stru00001
]
09140 Cellular Processes
09144 Cellular community - eukaryotes
04530 Tight junction
115196293
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
stru03000
]
115196293
Transcription factors [BR:
stru03000
]
Eukaryotic type
beta-Scaffold factors with minor groove contacts
Runt
115196293
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Runt
RunxI
Motif
Other DBs
NCBI-GeneID:
115196293
NCBI-ProteinID:
XP_029612839
Ensembl:
ENSSTUG00000031539
LinkDB
All DBs
Position
6:53832639..53870283
Genome browser
AA seq
585 aa
AA seq
DB search
MGLSPGSFFLEGEQLKPPLGFGETDRGPTTRPQTRAVTRQEAATIQSPPERGGREKELET
GISFETPPRPNKEEEGGTDQNTGALDIAENRVFQKCGSVARTFTGSVAMASNSIFESMSS
YQPCFIRDPAPGRRFTPPSTNLLSGKMSEGLPLGAQESSSAALVGKLHIADRGMVEVLSD
HPGELVRTDSPNFICSVLPTHWRCNKTLPIAFKVVALGDIPDGTLVTVMAGNDENYSAEL
RNATAALKNQVARFNDLRFVGRSGRGKSFTLTITVFTNPPQVATYQRAIKITVDGPREPR
RHRQKLEDVKTGALAFSERLSELEQLRRSTMRVTPPHHHHHHAPTPNPRPALNPAQFSNP
THHTQIPDSRQMQTSPSWSYEQSYPYLGQITTPTVHSTTPISPSRSSLSDLSSRLSGPDL
TAFSDPRMSLDRPFSSLASLPDSRYPDPRIHYPTGAFTYTPTPVSNGAIGLTMATTPAGR
YHTYLPPPYPTNAPQGQGGPFQAGSSPYHLYYSTAAGSYQFSMMAGGGGERSPPRIFPPC
TNASTGSSLLHPSLPNQSEGVGVEAEGSHSSSPTNMVPEAVWRPY
NT seq
1758 nt
NT seq
+upstream
nt +downstream
nt
atgggcttgagccctggctcttttttcctcgaaggggaacagttgaagccgccgctgggg
tttggagagactgaccgtggtccaaccactcgaccacaaaccagagctgtgaccagacag
gaggcggctacaatccaatcaccgccggagagaggagggagagagaaggagctagaaaca
ggaatcagttttgaaacccccccccgtccaaataaagaagaggaaggaggaacggatcag
aacaccggagcactggacatagcagagaaccgtgtgttccagaagtgtggtagcgttgct
aggacttttaccgggagcgttgccatggcatcaaacagcatctttgaatccatgtcatcc
taccagccatgcttcatcagggacccagcacctggtcggcgcttcacccccccttccacc
aacctgttgtcaggtaagatgagtgagggtctgcccctgggtgcccaggagagcagtagc
gccgccctggtgggaaagctgcatattgcagaccgaggcatggtggaggtgctgtcagat
caccctggagaactggtgaggacagacagccccaactttatctgttctgtcctacccaca
cactggaggtgcaacaagacgctgcccatcgcattcaaggtggttgcccttggtgatatc
cctgacggtaccttggtcacggtgatggcggggaacgatgagaactactcagcagagctc
cgcaatgccacggccgccctcaagaaccaggtggctcgcttcaacgacctgcgcttcgta
ggccgcagcggacgagggaagagtttcactctgaccatcacggtgttcaccaaccctccc
caggtggccacctaccagagagccatcaagatcaccgtggacgggcccagagaaccacgc
cgccacagacagaagctggaggatgtgaagacgggagcattggccttctccgagcgtctg
agtgagctggagcagctaaggcggagcaccatgagggtcacgccccctcaccatcatcac
caccacgcccccactcccaatccccggcccgccctgaacccggcccagttcagcaacccc
acacaccacacacagataccagactctaggcagatgcagacatctccgtcgtggtcctat
gagcagtcctacccctacctgggtcagataaccacacccaccgtccactcaaccacgccc
atctcacccagccgctcctccctcagtgatctgtccagccgcctctcaggccctgacctc
acagccttcagcgacccccgtatgtccctggatcgcccgttctcctccctggcctcgctc
cctgacagccgctaccctgacccgcgcatccactaccctactggggcgttcacatacacc
cctacccctgtatccaacggcgccatcggactcaccatggcaaccacccctgctgggcgc
taccacacctacctccccccgccctaccccacaaacgccccccagggccaaggtggaccg
ttccaggccggttcctctccctaccacctgtattatagcacggccgctgggtcctaccaa
ttctccatgatggcggggggaggcggggagcggtctcctccgaggatattccctccctgc
accaacgcatccacaggctcctccctcctgcacccgtctctgccaaatcagagcgaaggg
gtgggggtggaagcggagggaagtcacagtagctcccctaccaatatggtacccgaggcc
gtatggcggccatattga
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