Salmo trutta (river trout): 115196796
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Entry
115196796 CDS
T08542
Name
(RefSeq) enhancer of mRNA-decapping protein 4-like isoform X1
KO
K12616
enhancer of mRNA-decapping protein 4
Organism
stru
Salmo trutta (river trout)
Pathway
stru03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
stru00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
115196796
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
stru03019
]
115196796
Messenger RNA biogenesis [BR:
stru03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
115196796
mRNA degradation factors
5'-3' decay
Decapping complex
115196796
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ge1_WD40
EDC4_C
WD40
WD40_WDHD1_1st
WD40_CDC20-Fz
Beta-prop_EML_2
Beta-prop_TEP1_2nd
WD40_Prp19
Beta-prop_EDC4L
Pdc1_Ge1
NBCH_WD40
WDR55
Motif
Other DBs
NCBI-GeneID:
115196796
NCBI-ProteinID:
XP_029613565
Ensembl:
ENSSTUG00000002347
LinkDB
All DBs
Position
7:complement(5892706..5943633)
Genome browser
AA seq
1416 aa
AA seq
DB search
MASNSNIDIEGATQHLRDILKLDRPGNSVDASPSENQSKTSFNGELNGLLGAELIGAGDR
STMAESTGPNSENMNTQQCQIICLSGDDGSTCIPITSNNVEIVASRDSSIDSKARGSNKV
KIQPVAKYDWEHKYYYGNLIAVSNAYLAYAIRGANNQAMIRVLSLGSAERTLLKGFTGAV
TDLAFAHLDSTLLGCVDEAGNLVIWQLTCHSSKILDQVIVHVRRPEDTLLNSNRRLIWCP
FILEDNEENPEDASQTLALLHEDRAEVWDLEILRSNNSTWPVDATDLKDGVITIKGHTDR
ISEGALSPDGTVLATASHDGYVKFWQIYIEGQDQPSPLPGFFHRCLHEWQPHNGNPLSCL
LFCDNHKKQDPDVPFWRFLITGADQNQELKMWCTVSWTCLQTIRFSPDPFNSSVLPCLKA
SLDLSAECLILSDVQRKVLYVMELLQDQEKGRASFTAVSEFLLTHPVLSFGVQDVSHSRL
CHTEVLPPDEESESMTADGNQGPMESKAGIQIKLYCVHTKSLQDVQIWFQPNLGSGSLFL
PHSNSNNGFGFSDHLTDMSVEGLSSDKESGCGSENDLCKIPALADFLSPSSTAAMPKLMT
PDAFMTPSASVPASPGSSASSLTIVTAMSSNSDSGARGGEELTQSPKMSVESNSILISGL
GDNMPMYHLPQETTPHTLMFPLTYPLRPLQGLPSPNPPLSLDPQVIEPMLIQQASPTRAR
SPDVISSASTAMSQDIPEIASETLQRGLGGVSGAESREPLPALHTDSMASAASALHLLSP
RNRNSSDHGHLPLELGAVVGAVEVEQRLSNTPSLLENALSQENAAAAASCSDNVSHPWPA
APDITRETRNSLRDNGLGHCSREEIKDRHMSSPYHRRTYHLTQNDSQDASAEQSDHDDEV
ASLESSSGNCGARSSQRLPVKEWKSSPRGSPKLKRKSKKDDGDASHASQSRQPEQHHQQM
NPEVLEELLILLRNQQREIAELHQSQLELLQRVTGHMDAVQSSVIAHVEHVMVSQQEHEQ
RRMERILAEGHNRNQQLQEHLSQQLGQTLSNTLCNRLDKTLREEMKKTVPPTITKSLEPV
TAQMSNTIAAKLTAVEAALKENVSKVVKSKNTTDAIGRAAAEAMQGPIQAAYKDAFQGIV
LPVFERGCQSMFQQINESFKQGTHEYIQQLETHVKNKKQHEQEARDPMIGQLQQMIDTFQ
NSTDQLATTITASVRSEVQHQLHMTVGNLQDSILTQVQRIVKGEVSMAMKEQQAAVNSSI
MQAMRSAAGTPVPTAHLDYQAQQASILQLLQQGQLNQAFQQALSASDLNLVLYVCETIDS
QQVFGQHPCPLIQPVLLSLIQQLSTNLATRSELKISYLEDAVMNLDHGDPVTRDHMSAVL
SQVRQKLLQFLQSDPHSPLSKRARRLVMMLQGLVNH
NT seq
4251 nt
NT seq
+upstream
nt +downstream
nt
atggcttcaaattcaaacatagatatagagggtgcaacccagcatcttcgtgatatatta
aagctggacagacccgggaatagcgttgacgcctctccaagtgagaaccaaagcaaaaca
tctttcaatggcgaattgaatggacttctgggagcagaacttataggagcaggcgacagg
tcaaccatggctgaatccacaggccctaattcagagaacatgaacacccaacagtgtcag
atcatctgcctctctggggatgatggctccacttgcattcccatcacatccaacaatgtt
gaaattgtggccagtcgagactcaagcattgacagcaaggcacgtggcagcaacaaagta
aaaatccagcctgtcgccaagtacgactgggagcacaagtattactacggcaacctcatt
gcagtctctaacgcatacctggcatatgccatccgaggagcaaacaaccaggccatgatc
cgtgtgttgagcttgggctcggcagagcgcaccctgctgaagggcttcactggtgcagtc
acagacctggccttcgcacacctggactccaccctgctgggatgtgttgacgaggccggt
aacctggtcatctggcagctcacctgccatagcagcaagatcctggatcaagtcattgtc
catgtccggaggcctgaggacacacttctgaattccaataggaggttgatctggtgtccc
ttcatcctagaggacaatgaagagaaccctgaggatgccagccagaccctggccctactg
catgaagacagagctgaagtgtgggatctggagatcctccgcagcaacaatagcacctgg
ccagtagatgccactgacctgaaggacggcgttataaccataaaaggacatacagatcgc
atcagtgaaggtgccctgtctccggatggcacagtcttggccacagccagtcatgatgga
tatgtaaagttctggcaaatctacattgaaggacaggaccagccaagtcctctccccggc
ttcttccacagatgtctacatgagtggcagccccacaacgggaaccccctttcctgcctg
ctgttctgtgacaaccacaagaaacaggacccagatgttccgttctggcgctttctgatt
actggagctgatcagaaccaggagttgaagatgtggtgcacagtgtcatggacctgcctg
cagaccatcaggttctctccagacccgttcaactcctcagtcctgccctgtctgaaggcc
agtctggacctgtctgcagaatgcctcatcctcagtgacgtacagagaaaggtgttgtat
gtgatggagttgttgcaggaccaggaaaaaggcagagccagcttcacagccgtgtcagag
ttcctgctcacacaccctgtgcttagcttcggtgttcaggatgtcagccacagccgcctg
tgccacacggaggtcctcccgccagacgaggagagcgagagtatgactgcagatggtaac
cagggaccaatggaatccaaagctgggatccaaatcaagctatattgtgtccacacaaag
tcccttcaagatgtgcagatctggttccagccaaaccttggctctggctccttgttcctg
cctcactcgaactcaaataatggctttggtttttcagatcacttgacagacatgagtgtg
gaaggtttgagctctgataaggagtctggatgcggctccgaaaatgatctctgcaagatt
cccgctcttgctgacttcctgtccccttccagcactgctgctatgcccaagctcatgacc
cctgacgccttcatgacccccagtgcttcggtcccagcctccccaggcagcagtgccagc
agcctgaccatagtgacagccatgagcagcaactctgacagtggcgccaggggaggagag
gagctgacccagagccctaagatgtctgtggagagcaactccatcctcatctcaggctta
ggggacaacatgccgatgtaccatcttccacaagagaccactcctcatacgctcatgttc
cccctcacctaccccctccgccctctacaggggcttccctctccaaacccgcccctctcg
ctggacccgcaggtcattgagcctatgctgattcagcaggcctctcctacccgggcccgc
tctccggacgtcatctcatctgcctccacggccatgtctcaggacattcctgagatcgcc
tctgagacgctgcagcgaggcctggggggggtgtctggagctgaatctcgagaacctctc
ccagccctccacacagacagcatggcttctgcagcctcagctcttcacctcctctctcca
cgaaaccggaacagctctgaccatggccacctgcccctggagctgggtgctgtagtagga
gcagtggaggtggaacagaggctcagtaacaccccctcactactggagaacgccctgtca
caggagaatgctgctgccgctgcctcctgctcagacaacgtgagccacccgtggcctgca
gctcctgacatcacacgggaaacacgcaacagcctgcgggacaatggcctgggacactgc
tcgagggaggaaattaaggacagacacatgtcctctccataccacagacgcacctaccac
ttaacccagaatgacagtcaggacgccagtgcagaacagagtgaccatgacgatgaggtg
gccagtctagagtcgtcttcagggaactgtggagccaggtcgtctcaaagactgccagtg
aaggagtggaagagctctcccagaggctcccctaaactaaagaggaagagtaaaaaagac
gacggggatgcatctcatgcctctcagtccaggcagcctgagcagcatcatcagcagatg
aacccagaggtgctggaagagctcctgattttgctccgtaaccagcagagggagatagcg
gagctccatcagagtcagctggagctgcttcagagagtgacaggccacatggacgccgtg
cagagctctgtcatagcccacgtagagcacgtcatggtcagccagcaggagcacgaacag
aggagaatggagagaatcctagcagagggacacaaccgtaaccagcagctccaggagcat
ctctcgcagcagctgggtcaaactctcagtaacaccctttgtaatcggctggacaagact
ctccgagaggagatgaagaagactgttcctcccactatcaccaagagcctggagcctgtc
actgcccagatgagtaacaccattgctgctaagctgacagctgtggaggcagcactgaag
gagaatgttagcaaagtcgtgaagtcaaagaacaccacagatgctattggccgggcagct
gccgaggcaatgcaggggcctatccaggctgcctacaaagatgctttccagggcattgtg
ctgcctgtgtttgagaggggctgccagtctatgttccagcagatcaatgagagcttcaag
cagggcacccatgagtatatccagcaactggagacccatgtgaagaacaagaagcagcat
gagcaggaagcacgggatcctatgattggccagctgcaacagatgattgacacgttccag
aactcaacggatcagctggccaccaccatcacagcaagtgtccgctctgaggtccagcat
cagctccacatgacggtgggaaacttgcaggactcgatcctgacccaggtgcagcgcatt
gtgaagggtgaggtgagtatggccatgaaggagcagcaggcagctgtgaactccagcatc
atgcaggccatgcgctctgctgcaggcacgcctgtccccactgctcacctggactaccag
gcccagcaagccagcatcctgcagctgctgcagcagggacagctcaaccaggccttccaa
caggccctgtcagcctctgacctgaacctggttctgtatgtgtgcgagaccatcgactcc
cagcaggtgtttggccagcatccctgccccctcatccagccagtgctgctgtccctcata
cagcagctgtccactaacctggccacacgctctgagctcaagatcagttacttggaggat
gctgtgatgaacctggaccatggtgatccggtgacgagggaccacatgagtgcggtgctg
tcccaggtccgacagaagctgttgcagttcctgcagtcagacccacacagtcctctcagc
aagagagcccggcgcctggtgatgatgcttcagggcctggtcaatcactag
DBGET
integrated database retrieval system
