Salmo trutta (river trout): 115196935
Help
Entry
115196935 CDS
T08542
Name
(RefSeq) low-density lipoprotein receptor-related protein 5-like isoform X1
KO
K03068
low density lipoprotein receptor-related protein 5/6
Organism
stru
Salmo trutta (river trout)
Pathway
stru04150
mTOR signaling pathway
stru04310
Wnt signaling pathway
Brite
KEGG Orthology (KO) [BR:
stru00001
]
09130 Environmental Information Processing
09132 Signal transduction
04310 Wnt signaling pathway
115196935
04150 mTOR signaling pathway
115196935
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
stru04131
]
115196935
Membrane trafficking [BR:
stru04131
]
Endocytosis
Clathrin-mediated endocytosis
Low-density lipoprotein receptor (LDLR) family proteins
115196935
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ldl_recept_b
FXa_inhibition
Ldl_recept_a
DUF5050
Vgb_lyase
SGL
EGF_LRP2
cEGF
EGF
Insulin_TMD
Motif
Other DBs
NCBI-GeneID:
115196935
NCBI-ProteinID:
XP_029613841
Ensembl:
ENSSTUG00000016009
LinkDB
All DBs
Position
7:11752192..11803091
Genome browser
AA seq
1624 aa
AA seq
DB search
MELKPRPLAMDVLLVELLFYSSLLSLVHGSPLLLFANRRDVRLVEVGRPESAVVVSDLED
AAAVDFLYSEGLIFWTDVSEEAIKQTYYNQSTHSLKEAMGTGQTVVVSGLDSPDGLACDW
LGRKLYWTDSETNRIEVANLDGTSRKVLFWLDLDQPRAIALNPAHRYMYWTDWGEEPRIE
RAGMDGSNRKIIVEVDIYWPNGLTIDLDEQKLYWADAKLSFIHRANLDGSSRETVVEGTL
THPFALTLSEETLYWTDWQTRSIHACNKHTGDKRREILSGIYSPMDIQVLGPDRQPDIQT
PCSVGNGGCSHLCLLSPMQPFYSCACPTGVKLKEDGKTCRPGAEQVLLLARRTDLRRISL
DLPDFTDIVLQVDDIRHAIAIDYDPVDGYVYWTDDEVKAIRRSRIDGTEAQTLVTTEINH
PDGIAVDWVARNLYWTDTGTDRIEVTRLNGTSRRILISENLDEPRAIVLDPVNGYMYWTD
WGEKPKIERANLDGSERLVLLNTSLGWPNGLAIDYEAGKLYWGDAKTDKIEVIDVDGSNR
VTLLEDKLPHIFGFTLLGDYIYWTDWQRRSIERVHKTDAIREIIIDQLPDLMGLKATRVT
ETSGTNGCAEDNGGCSHLCFHRPQGLRCACPMGLELLSDMRTCVVPEAFLLFTNRADIRS
ISLGTNSNDVAIPLTGVKEASALDFDVSENRIYWTDVSTKTISRAFMNGSSVEHVIEFGL
DYPEGMAVDWMGRNVYWADTGTNRIEVARLDGQYRQVLVCKDLDNPRSLALDPANGYMYW
TEWGGKPRIARAHMDGSNIVTLVDKVGRANGLTIDYIDQRLYWTDLDTCMIESTNMQGLQ
REIVADDLPHPFGLTQYRDYIYWTDWNLRSIERADKRSGLNRTMVQGHLEYVMDILVFHS
SRQDGANDCSQNNGNCAHLCLASPAGAQCRCASHYTLDSNGRNCSSPSSFLLFSQKASIS
RMVLGEQSPDIILPIHVLRTVRAISYDPLDHLVYWVDGRQNIRRARDDGTQSSVVVSTTS
THQQQPDKQPHDLSLDPYSRTVYWTCEATNTINLQRLDGDAVGVVLRDEHDKPRAIVVNA
EKGYMYFTTMQDRSAKIEGASLDGTERESLFTTGLIRPVALALDNKLGKLFWVDADLKRI
ESSDLTGANRIVLQDSNILQPMGLTVLGEHLYWIDRQQQMIERVDKLTGEKRTRIQGRIS
YLTSIHAVEDMDPTEFASHPCSRDNGGCSHICIAKGDGTPRCSCPMHLVLLPNLLVCGEP
PTCSTEQFTCATGDIDCIPMAWRCDGFAECDDNSDEEKCPVCSAFQFQCDKGQCVDAQLR
CNGEADCTDNSDEQDCDTICLPNQFRCNNNQCILKKQQCDSYSDCADNSDELFCEFLTPS
SNDIHSSHTSTIGPVIGIILSVFVMGGMYFLCQRVVCRRYKGPNGAFPHEYISGTPHVPL
NFIAPSSSQNGTFTGKEGISCGKSIMSSVSLMGSSSSGTPLYDRNHVTGASSSSSSSAKG
AFYPQMLNPPPSPATDRSLYNADVFYSSNSPSTTRSYRPYLMRGVAPPTTPCSTDVCDSD
YTTSRWKSNKYYMDLNSDSDPYPPPPTPRSQYLSAEESCPPSPSTERSYFHLCPPPPSPC
TDSS
NT seq
4875 nt
NT seq
+upstream
nt +downstream
nt
atggaattaaaaccacgaccactagcaatggacgtccttcttgtggaattactgttttat
agcagcttgctctctctggttcatggatctcccttgctgctgtttgccaaccggcgggat
gtgaggctggtggaggtggggaggccggagtcggcggtggtggtcagtgatctggaggat
gctgctgctgtggacttcctctactctgaaggactcatcttctggaccgatgtcagcgag
gaggccatcaagcaaacctactacaatcagtccacccactctctgaaagaggccatgggg
acagggcagactgttgtcgtgtcgggcctcgactcccctgacggactggcttgcgattgg
ttgggccgtaaactatactggaccgactcggagaccaaccgcattgaagtagccaacctg
gatggcacctctcggaaagtgctcttctggttagacctggaccagccccgggccatcgcc
ctgaacccagcccaccgctatatgtactggacagactggggggaggagcctcgcatcgag
agggcggggatggacggcagcaacaggaagatcatcgtggaggtggacatctattggccg
aacggtctcaccattgacctggacgaacagaaactgtactgggccgacgccaagctgagc
ttcatccacagagctaatttggatggctcctcacgggagactgtggtggagggcaccctc
acccacccgtttgccctcaccctgtcagaggagactctgtactggacagactggcagacc
cgctccatccacgcctgcaacaaacacacaggagacaagaggagggagatcctcagtgga
atctactcccccatggacatccaagtgctgggtccagatagacagccagacatccaaact
ccctgcagtgtgggcaacggaggctgctcccacctgtgcctgctgtcccccatgcagcct
ttctacagctgtgcctgccccactggagtcaagctcaaggaggatgggaagacctgccgc
ccaggtgcagagcaggttctgctgctggcccggaggactgacctgcggaggatctctctg
gacctcccagacttcaccgacatcgtccttcaggtggatgacatccgccatgccatcgcc
attgactacgaccccgtggatggatacgtgtactggactgatgacgaggtcaaagccatc
cgccgctcccgtatcgacggcactgaggcccagaccctggtcaccacggagatcaaccac
ccagatggcatcgcggtggactgggtggcccggaacctgtactggacggatactggcact
gaccgtattgaggttaccaggttgaacggaacctcccggcgtattctgatctcagagaac
ttggatgaaccaagggccattgtgctggaccctgtcaatggttacatgtactggacagac
tggggggagaagcccaagatagagcgagctaacctggatggaagtgagcgtctcgtgctg
ctcaatacctcgctgggttggccaaacggtttagccatcgactatgaagcaggaaagctg
tactggggcgatgccaagacggacaaaattgaggtgattgacgtggacggctccaacagg
gtgaccctgctggaggacaagcttccccacatctttggcttcacgctgctgggcgactac
atctactggacggactggcagagacggagcatcgagagggtccacaagaccgacgccatc
cgagagataatcatcgatcagctgcctgaccttatgggtctcaaggccaccagagtcaca
gagacctccggcaccaacggctgtgcggaagacaacggcggctgcagccacctgtgtttc
caccggccccaaggcctgcgctgtgcctgtcccatgggcctggagctgctcagtgacatg
aggacgtgcgtggtgcccgaggctttcctgctcttcaccaaccgggctgacatccgctcc
atctccctcgggaccaactccaacgacgtggccatcccactcaccggggtcaaggaggcc
tccgccctcgactttgacgtctccgagaacaggatctactggactgacgtcagcaccaag
accatcagcagggccttcatgaacggcagctctgtggagcatgtgatagagtttggcctg
gactacccagagggcatggcagtggactggatgggcaggaacgtgtactgggccgacacc
gggaccaaccgcatcgaggtggcccggctggacggacagtaccggcaggtcctggtgtgt
aaggacctggacaaccctcgctccctggccctcgaccctgccaacggttacatgtactgg
actgagtggggaggcaagcccaggatcgccagggcccacatggacggcagcaacatagtg
accctagtggacaaagtgggcagagcaaacggcctcaccatcgactacattgaccagaga
ctgtactggaccgacctggacacctgcatgatagagtcaaccaacatgcaaggtctgcag
agggagatagtggctgatgacctcccacacccgtttggtctgacccagtaccgggattat
atctactggacagactggaacctgcgcagcatcgagcgggcagacaagcgcagcggcctc
aaccgcaccatggtccagggacacctggagtacgtcatggacatcctggtcttccactcc
tcccgccaggacggtgccaacgactgctcccagaacaacggcaactgtgcccacctgtgc
ctggcgtcgcccgccggtgcccagtgccgctgtgcctcccactacaccctggattccaat
ggcaggaactgcagctccccctccagcttcctcctgttcagccagaaggcctccatcagc
cgcatggttctgggggagcagagccccgacatcatcctgcccatccacgtcctccgcacc
gtccgggccatcagctatgaccccctggaccacctggtctactgggtggacggacggcag
aacatcaggagggcccgcgacgacggcacacagtcgtcagtggtggtgtccaccacttcc
acccaccagcagcagcctgacaagcagccccacgacctgagcctggacccctacagccgt
actgtctactggacttgtgaggccaccaacaccatcaacctccagcgcctagacggagat
gctgtgggcgtggtgctgagggacgaacacgacaaacccagagccatcgttgtcaatgca
gagaaagggtacatgtatttcaccaccatgcaggatcgctctgctaagatcgagggagcg
tctctggacgggacagagcgggagtctctgttcaccacgggtctgatccggcctgtagcc
ctggccctggacaacaagctgggaaaactgttctgggtggacgctgacctgaaacgcatc
gagagcagtgacctcactggagccaatcggatcgtcctccaggactcaaacatcctgcag
cccatgggtctgacggtgctgggagagcacctgtactggatcgacagacagcagcagatg
atcgagcgggtggacaagctgaccggggagaagaggacccgcatccagggtcgcatctcc
tacctcaccagcatccacgctgtggaagacatggaccctaccgagtttgcttctcatccc
tgttcccgtgacaacggaggctgctcacacatctgcatcgccaaaggagacgggacgcct
cgctgctcctgtcccatgcacctggtcctgctgcccaacctgctcgtctgtggagagccg
cccacctgttccacagagcagttcacctgtgccacaggcgacatcgactgcatcccgatg
gcgtggcgctgtgacggcttcgccgagtgtgacgataacagtgacgaggagaagtgccca
gtgtgctcggccttccagttccagtgtgacaagggccagtgtgtggatgctcagctacgc
tgtaacggcgaggcagactgcacagacaactccgacgaacaggactgtgacactatctgc
ctgcccaaccagttccgctgtaacaacaaccagtgcatcctgaagaaacagcagtgtgac
tcctacagcgactgtgctgacaactctgacgagctcttctgtgaattcctcaccccctcg
tcaaacgacattcactcatctcacaccagcaccataggccctgtcattggcatcatcctg
tcagtgtttgtgatgggagggatgtactttttgtgccagcgggtcgtgtgccgccgttac
aaaggtcccaacggagccttcccccacgagtacatcagtggcaccccccacgtgcccctc
aacttcatcgcccccagcagctcacagaacggaaccttcacaggtaaagaaggtatctcg
tgtgggaagtctatcatgagttctgttagtctgatggggagcagcagtagtgggacgccg
ctctacgacaggaaccatgtgacaggggcctcctccagcagctcatccagcgccaaggga
gccttctatccacagatgctcaaccctcctccctctccagccacggatcgctccctgtat
aacgcagacgtcttctactcctccaacagtccctccaccaccaggtcttacaggccttat
ctaatgcgaggcgtggcaccccccaccaccccctgcagcactgacgtctgtgacagcgac
tacaccacaagtcgctggaagagcaacaagtactacatggacctgaactcagactctgac
ccctacccgcctccccccaccccccggagtcagtacctatcagcagaggagagctgcccc
ccttctccatccacagagcgcagttacttccacctctgtcccccgcccccctcaccctgc
actgactcttcatga
DBGET
integrated database retrieval system
