Salmo trutta (river trout): 115196999
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Entry
115196999 CDS
T08542
Name
(RefSeq) voltage-dependent calcium channel subunit alpha-2/delta-4-like isoform X1
KO
K04861
voltage-dependent calcium channel alpha-2/delta-4
Organism
stru
Salmo trutta (river trout)
Pathway
stru04010
MAPK signaling pathway
stru04260
Cardiac muscle contraction
stru04261
Adrenergic signaling in cardiomyocytes
Brite
KEGG Orthology (KO) [BR:
stru00001
]
09130 Environmental Information Processing
09132 Signal transduction
04010 MAPK signaling pathway
115196999
09150 Organismal Systems
09153 Circulatory system
04260 Cardiac muscle contraction
115196999
04261 Adrenergic signaling in cardiomyocytes
115196999
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
stru04040
]
115196999
Ion channels [BR:
stru04040
]
Voltage-gated cation channels
Calcium channel, voltage-gated (Cav)
115196999
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Gene cluster
GFIT
Motif
Pfam:
VGCC_alpha2
VWA_N
dCache_1
VWA_3
VWA
VWA_2
CobT_C
dCache_2
Zn_ribbon_5
VWA_CoxE
Motif
Other DBs
NCBI-GeneID:
115196999
NCBI-ProteinID:
XP_029613962
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Position
7:complement(14959077..15034342)
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AA seq
1145 aa
AA seq
DB search
MSSSGDTVDPGRIELGPRADTVGPYRMGLGPRAESGGVTSRLGPRGTPAGLRLGLWILCF
SWFCFTAHAQMKIPPETVQVWANVLSVQLREATTRYSGANILQKKFRDVESIIKIVDIDG
RAQVKNFSEDIERMLGSKMKSVKRLAESAEDADLYHEFNKTLQFDYYNSMLVNTMDDDGN
FIELGGEFPLEENEHFNNIPVNTMQSDVQVPTNVYNKDPYILNGIYMSEALNDVFINNFQ
KDPTLTWQYFGSSSGFFRIYPGIKWTPDSNGVAAFDCRNRNWYIQAATSPKDIIIVVDIS
GSMKGLKMTIAKHTINTILDTLGENDFVNVIAYTDYVRYVEPCFQGTLVQADLDNREHFK
VLVDELHVKGEGKVAKAMKESFKILNEAATKGQGSLCNQAIMLITDGAMEDFKDVFEEFN
WPDRRVRLFTYLIGREMTFADNTKWIACNNKGYYTHISTLADVQENVMEYLHVLSRPMVI
NHNHDIIWTEAYMDSVLFATKAQSLLLMTSVAMPVFSKKKETLSHGILLGVVGSDIPLLE
VMKLAPRYRLGPHGYAFLITNNGYILAHPDLRPLYKDGKKLKPKPNYNSVDLAEVEWEDI
DETLRTAMVKGETGTLSLNVRASVDKAKRPMFLTNDYFYTTINDTPFSFGMVLTRGHGQL
MFMGTVSVEEGLHDLTSPDLSIAAEWTYCETDIDPHHRKYSQLQAVIRYLQGKEPDLECD
EVLLQQTLFDAVVTAPLEAYWQAIMLNASGMEAGVETAFLGTRSGIIRLTRYTGMETRVA
KKFLTPADKDNLFTMDHFPLWYRLAMENPPGRFLYYMPVEDNDNKDKTGASKYVIAVTAV
TVSSGGKTAMAGAIGVQMSLEMLEKRLWAITFQPNDTDCNEVEGVCPLTCQSIDVNCFLV
DSNGFIIVSKERSEVGRFFGEVDGSVMTALIKSGMFKQVSLYDYQGMCRSGHSHSSSARP
LLSPFYGLAAVIKWFFSHMLMFLLEFNLCGLWHSDYIVDAKAGYHTSHKAKKVDALQPCD
TEYPGFVYDSSIRETNSLIKCGRCQKMFVVQAVPESNLVLMVVQADCDCSRQYSSITLEP
KEVKYNASVKCNRMKSQKVRRRPNSCHAYHPKENAKDCGGASEISLSVAVFLTSLATSLA
LCRWT
NT seq
3438 nt
NT seq
+upstream
nt +downstream
nt
atgtcttcctcaggcgacacagtggacccaggcaggatagaactaggacccagggctgac
acagtgggcccttacaggatgggactaggacccagggccgagtcaggtggagtaacgagc
aggctgggacccagagggactccagcggggctgaggctgggcctgtggatcctgtgtttc
agctggttctgcttcactgctcacgctcagatgaagataccacctgagacggtccaagtt
tgggcaaatgtcctttcagtgcaactacgtgaggctaccacaagatactcgggagctaac
attctgcaaaagaaatttagagatgtagagtccattatcaagatagtggacatcgatggg
agagcccaagtgaagaacttttcagaggacatagagagaatgctggggtccaagatgaag
tctgttaagcggttggctgagtctgcggaggatgccgatttgtaccacgagttcaacaaa
actctacagtttgactactataactccatgctggtgaacacaatggacgacgatggtaac
ttcatagagctgggtggggagtttcctctggaggagaatgagcatttcaacaacatccca
gtcaacacaatgcagagtgacgtacaggtccccaccaatgtctacaacaaagatccctac
atcctcaatggaatctacatgtcggaggctctgaatgacgtgttcatcaataacttccag
aaagaccccactctcacctggcagtactttggcagctcctcgggtttcttcagaatctac
cctggtatcaaatggactccagattcaaatggtgtggctgcttttgactgcaggaaccgt
aactggtatattcaggctgccacctcaccaaaggacattatcattgtggtggacatcagt
ggcagtatgaaaggcttgaagatgaccattgccaaacacaccatcaacaccatccttgac
acactgggggagaacgactttgtcaacgtcattgcttacactgactacgtgcgctacgta
gagccctgcttccaaggcactctggtgcaggctgatttggacaaccgtgagcattttaag
gtgctggtggatgagctgcatgtgaagggagagggcaaagttgcgaaggccatgaaggaa
tcgttcaaaatcctgaacgaggcagcgaccaagggccaaggcagtctgtgcaaccaggca
atcatgctgatcacagatggagccatggaggacttcaaggacgtgtttgaagagttcaac
tggcctgatcgcagggtgcggctcttcacttaccttataggcagagagatgacctttgca
gacaacaccaagtggatagcctgcaacaacaagggttactacacacacatctccactctg
gctgacgtacaggagaatgtcatggagtaccttcatgtcttgagtcgaccaatggtcatc
aatcacaatcatgacatcatctggacggaggcctacatggactctgtgctctttgccaca
aaggctcaaagtttacttctcatgacctccgtggcaatgcctgtcttcagcaagaagaaa
gagacgctgtcccatgggattctgctgggtgtggtgggttctgacatccccctgctggag
gtcatgaagctggctcccagatataggctgggtccacatggttacgccttcctcatcacc
aacaacggttacatcctggcacaccctgacctacgacctctttataaagatggtaagaag
ctgaaacccaagcccaactacaacagtgtggacctggctgaggtggagtgggaggacata
gatgagacactaaggacagccatggtgaaaggggagacgggcactctgtccttaaacgtg
agagcatcagtggacaaagcgaaaaggcctatgttcttaacaaatgactatttctacaca
accatcaacgacaccccattcagttttggtatggtgctgaccaggggtcacggacagctg
atgttcatggggacggtctctgtggaagagggcctgcatgacctgacgtcccctgatcta
tccatagccgctgagtggacatactgtgagacagacattgaccctcaccaccgcaaatac
tctcagctccaggctgtcattcgctacctgcaggggaaggagcctgacctggagtgtgac
gaggtgctgctgcagcagaccctgtttgatgctgtggtgacagcccccttagaagcctac
tggcaggcaataatgctcaatgcatctgggatggaggcgggtgtggagacagccttcctg
ggaactcgctctggcatcatccggctgaccagatataccggcatggagaccagggtcgcc
aagaagttcctgactccagcggataaggacaacctgttcaccatggaccacttccccctg
tggtaccgtctggccatggagaaccctcccggaagattcctctactacatgccggtggag
gacaacgacaacaaagacaagacaggggcgtcgaagtatgtcatagctgtcacagctgtg
actgtgtcatcgggaggcaagacggccatggctggagccatcggggtgcagatgtccttg
gaaatgctggagaagaggctatgggccattacctttcagcccaatgacacagactgtaat
gaagtggaaggtgtctgccctctcacctgtcaaagcattgatgtcaactgtttccttgtg
gacagcaacggtttcatcatagtctcgaaagagaggtcagaggtcggacgtttctttggg
gaagtggacggatctgtgatgacagcgttgatcaagtcaggcatgttcaagcaggtgtcg
ctgtatgactaccagggcatgtgtagatctggacacagtcattccagtagtgctcggcct
ctgctcagtcctttctacggccttgcggcagtgatcaaatggttcttttctcacatgttg
atgttcttactggagttcaacctctgtgggttgtggcactcggactacattgtagacgcc
aaggctggctaccatacatcccataaagccaagaaggttgacgcgctgcagccgtgtgac
acagagtatcctggcttcgtgtacgattcctccatcagagagaccaacagcctcatcaaa
tgtggccgttgtcagaagatgtttgtggtgcaggcggttcctgaaagtaacctggtgttg
atggtggtccaggcggactgtgactgctcccgccagtattcctccatcacactggagccc
aaggaggtcaaatacaatgcatcagtcaagtgtaacaggatgaaatctcagaaagtccgc
cggcgcccaaactcctgtcacgcctatcatcctaaggaaaatgccaaggactgtggagga
gcttcagagatcagcctatcggtggccgtcttcttgacttctctggccacttcattggcc
ctctgcagatggacataa
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