Salmo trutta (river trout): 115197125
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Entry
115197125 CDS
T08542
Symbol
spg11
Name
(RefSeq) spatacsin isoform X1
KO
K19026
spatacsin
Organism
stru
Salmo trutta (river trout)
Brite
KEGG Orthology (KO) [BR:
stru00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
stru03400
]
115197125 (spg11)
DNA repair and recombination proteins [BR:
stru03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
Other HR factors
115197125 (spg11)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Spatacsin_C
PUL
Motif
Other DBs
NCBI-GeneID:
115197125
NCBI-ProteinID:
XP_029614224
Ensembl:
ENSSTUG00000027292
LinkDB
All DBs
Position
7:complement(21373352..21465069)
Genome browser
AA seq
2419 aa
AA seq
DB search
MIMINMLHRSETRDNCALEVALIPESNLCVNVVDTAKAKMAQGCSLLCSLSGAGGLTVGD
ISESKAPGRTVDGTYTDFAWEEVTVYNGARGSPRLLAVSSEFQLKLYELEAEGPTSGPLV
SASEFTADKLLQLVKEKALSVAEVVSLRLLSFVDARSFLLLNSSVVVQLQWQQGAEPETL
SCCSIVLPPKAPLDTCTDYQLCRGILFVLTTAGVIYVFDSAEGRKLASVDLSSYHTAGLG
EDEPAPYLDSFCLLQVSPDLGTAVAATQSNTAFAVDLNHYFRMYPEHLMCRVVPSRPPLR
PQGPCDEDSLSSSTYSHTVLGTSFSTDRSWEARLTSLYNKSKATPPSSPQTPGAPWFKDF
PHIECGRAAIAAKLSQSRVPSGGATMQFSVPDTTAPVLLSVSEFSTVLTFVSPGNSETTV
AFWDLQSQSVTYHRPTSPTVPIQRTAEEQLSLLLKSSGLSLVLFAVSQEELLNRLMVFGS
AGTVDSLCHLNEWGRCSIPIHALQAGLKNHQLDTVDFFLKSKKNILTPPSGYILPDQSAA
ISTQSQLKNVQDLCPALDLLRCAIRDNHTEAQSRQFSEQLLSITLAFLNSQVRAVLSATE
ELDENLQECVEILDSYVSDLRTFMKRFPWPTGGDTSTLVPSPIPVPEEVENDDWSSLSSE
EVVERAVLTKQIPRAQAYLRSQNRPDQRLEELRSTGLRLAFNCLTHRDLEQATALLRNMG
FNVKKQLHNICLYTDDRDLRDFVVEELSKQSYLSDEETQRVEFIKQIEALCAVPETRCTD
PVGRQRVPQMAQTDPGSKSLLEELVDRSGSQSEQTLWSSLRLDWVRHWDHNTQRAILLSR
LQDSAAVSSCDPGVLWSYLTSHHDQRRVTEWIESLAAQNGDPSSAPQWPALTAEVVNNNT
RCSAHMRNHILYMLARRGVFIQAEMADFEHLLWRLGQAGGVMQASPPMPQYRSPQGHDLH
TRFIHHCLDNGLRYLLYTYLEHNRLTPRNCPVLADNGLYESHPWFEMLVKMQEITRDLSD
PERVFQASLTSAQVLIPGSQAMVSSMLLEGHSLLALATIMFAPGGIDQVVSQGERAGSSV
SRVDPQLLKMALSPYPKLKAALFPVSGPRGTTATSSDISVYHLMQSLHPLDPSRLFGWQS
ANTLGSTETSVELPHFSSPHLVSKYALIENLDFLYYLRHGRPSFAYGTFLVQQLANSNEV
KSQLSHAAEQAYSLAMLHFSVPSVAAACVCFCELLGVCSLKLRVDLKALSLILRLRSQRP
GGTSTFSLKDLLAPKGSKLVEVERETAEELLFDLEAAVKDSLERKGISRSSYEAGQEWAL
PIQFCQLHALPLSSVYPHDCAADSQWLHFLLFVQLHSYPPQQVRSLATQFSPALQAHLTL
AFQNLQLSSQWRVGEVEDREAQGQVTLPSEEASDPPKELFQVLLQSQEQASPWRHLLGEA
LAQHCPTLTTLAACHQEADLLQCLCVWVLTSVDEVIATEATAHLEESPRSHEWNLHDLSI
IWKTLLRKCRVRPLIRGFQLFQRDSPLIHVLLMYELCYDYKKYPEAKKKLIEFQKCLITL
RSSGAHAPAGIPLQWVECQASVLLLTMMQQCSTQYELRRLLQLLADMERLLKSNGPDFKK
LSFLSQVLQDTSVSLSPRLLESYSPDILQGECQSMLEKLQDSGLFHKARQVAELAGLPID
SLVINELLQDLSALKAKRHWERRETRVSFWRKCHEQFRTNSTSPGAASEFFLAQAGASEP
HRGSVAETELLCVQERCLLLSLAGHWLSWLTLAPLARLEDLEKQLWTSRVRQQVLLTAME
KESMFALPVPTIAPEENSYEALIREFSFSKMAVLNEPRYLSLDGLPSFSPEEEGGEKTGS
EEQGALAILVGQLLDEGCIHEASRVCRYFSFCSRDMWVVLHCRGLASGELQAGLQDMLTF
EGLPKKSIPSSTSFSSLSSFVMVPSPEDQTVTQLQILVDECRHGKSYCKQVLSLYELSKE
LQCSYSEISAEEPQAVLCKVLLSQQPERYKKAQAFISVQGLQPDTVAQLVSTAVVQGLLA
SAQDGETAEKQMFSPEEGRESFLQLAKLCGDPNLVGIKLLDHIPTVPLGELGCTVELLIL
AHDCFSLTCNMEGIVRVLQAARHLSHAHLAHSEHYSLLVRLLTGIGRYNDMTYIFDLLNQ
NHRFEMLLRKKVESNFRLKTALLDYIKRCLPGDSEKYNMVALCFSMCREIGENHEGAART
QLKLIESQPWAVTPELKSALIKVLTLLKDAAESYSKDSCVRQAARCVKMAKLTTLQLHFL
NHGQDQRVINLRQSDLLGAIVALPRCYQAFVLSEAYDYSPDWAEVLYQKVILSGDFAYLE
EFRLHRPLPACLFEDISQKLTHNTPPSSAGQNLKRLLQHCDDVYTYYKLAYEHKFFDVAN
MLLQDSKTSSYLNDRLGTR
NT seq
7260 nt
NT seq
+upstream
nt +downstream
nt
atgattatgataaatatgttgcacagatctgaaactcgagataactgtgcattagaagtc
gctctcatcccggagagcaacctctgtgtaaatgttgtggacacagcaaaagccaaaatg
gcccaaggctgctccttgctctgctccttgagtggtgctggggggctcacagtcggcgac
atttcagagagcaaggcaccggggaggacggtggatggcacatatacagactttgcctgg
gaggaggtgaccgtttacaatggagcccgtggcagccctagacttctggctgtgagctct
gagtttcagctgaaactgtatgaactggaagcagagggccctacctctggccctcttgtc
tctgcctctgagttcacagcagataagctactgcagctggtcaaggagaaagccctgagt
gtggctgaggtggtgtccttgaggctgttgtcctttgtggatgccagaagctttctcctg
ctcaactccagtgttgtggtgcagctgcagtggcagcagggggctgaaccggagaccctg
tcctgctgcagcatcgttctgcccccaaaagcccccctggacacatgcactgactaccag
ctctgcagaggcatactctttgtgttgaccacagctggagtcatatatgtgtttgacagt
gctgaggggaggaagctggccagtgtagacctgtcctcgtaccacactgctgggctgggg
gaagacgagccggccccctacctggactccttctgtctcctccaggtgtctcctgacctg
ggtactgctgttgctgccactcagtctaacactgcctttgctgtcgacctcaaccactac
ttcaggatgtacccagagcatctgatgtgtcgggtggtccccagccgccctcccctcagg
ccccagggtccctgtgacgaggacagcctctccagctccacctacagccacactgtgctg
ggcacctccttcagcactgaccggtcctgggaagctcggctgacttctctgtacaacaag
tccaaggctacccctccctcttctcctcagactccgggggctccttggtttaaggatttc
ccccacatcgagtgtgggcgggcagctatcgctgccaagctctcccagagcagagtccca
tcagggggagccaccatgcagttctctgtgcccgacacaactgccccagtgctgctctct
gtctctgaattctccactgtgttgacctttgtctcccctggcaacagcgagacaactgtg
gccttctgggatctgcagtcccagagtgttacctaccaccggcccacctcgcccaccgtg
cctatccagcgtaccgcagaggagcagctcagcctgcttctgaagagttcaggcctgtcc
ctggtgctgtttgctgtgtcacaggaggagctgctcaacagactaatggtatttggcagt
gctggcacagtggactctctgtgccaccttaatgaatggggccgctgctccatccccatt
cacgccctgcaggctggtctaaagaaccaccagttggacacagtggacttcttcctgaag
agcaaaaagaacatcctgactccaccctctgggtatattctacctgaccaatcagctgcc
atctcaacccagagccagctgaagaatgtccaggatctgtgtccggctctggaccttctg
cgttgtgccatcagagacaatcatactgaggcccagagccgacaattttcagaacagctg
ctcagcatcaccctggccttcctcaactcacaagtcagggccgtcctctctgccacagag
gagctggatgagaacttgcaggagtgtgtggagatcttggatagttacgtctcggatctg
cgcaccttcatgaagaggtttccctggccaacaggtggcgacacttccacccttgtccca
tcccccatacctgtacctgaggaggtggagaatgatgactggagttccctctcttctgag
gaggtggtcgagcgggcagtgctgaccaagcagattccccgggcccaggcctacctgagg
agccagaacaggccagatcagcggctggaggagttgaggagtacggggctgcgtctggcc
ttcaactgcctcacacacagagacctggagcaggccactgcactgctcaggaacatgggt
ttcaacgtaaagaagcaactgcataacatatgcctctacacagatgaccgggacctaagg
gactttgtggtggaggagttgtctaagcagagctatttgtctgatgaagagacacagagg
gtggaattcatcaaacagattgaggctttgtgtgcggtgcctgagacgcgctgcacagac
cctgtgggcagacaacgggttcctcagatggcccagacagacccagggtctaagagcctg
ttggaggagctggtagaccggagtggctcccagtcagaacagacactgtggagttcgctg
cgtctggactgggtcagacattgggaccacaacacccagagagccatcctgctgtcacgc
ctacaagactcggcagctgtcagttcctgtgacccgggggtcctgtggtcatacctcacc
tctcaccacgaccagcggagggtcaccgagtggattgagagcctggccgcccagaacggt
gacccttccagcgccccccagtggcccgccctcacggcagaggtggtcaacaacaacacc
cggtgcagcgcccacatgaggaaccacatcctttacatgttggccaggagaggagtgttc
atccaggccgagatggcagattttgagcatctgttgtggaggctgggccaggcaggtggg
gtgatgcaggccagcccacccatgccccagtaccgctcccctcaaggacacgacttacac
acacgcttcatccaccactgcctggacaacggccttcgctacctgctctacacctacctg
gagcacaacagattgacccccaggaattgccctgtccttgctgataatggtctatatgaa
agtcacccgtggtttgaaatgctggtgaaaatgcaagagattaccagagacctctcagat
ccagaacgtgtgttccaggccagtctgaccagtgcccaggtcctcatcccaggcagccag
gccatggttagcagcatgctcctggaaggacacagtcttctggccctcgctaccatcatg
tttgccccgggtggcatcgaccaggtggtgagtcagggggagagggctgggagctctgtg
tctagggtggacccccagctactgaagatggccctgagcccctaccccaagctcaaggca
gcgctcttccctgtgagcggaccacgagggaccaccgccacctcatccgatatctccgtc
taccacctcatgcagtctttacatccattggatccatctcgactgttcgggtggcagtct
gccaatacactaggctccaccgagacctcagtggagctgccccatttctctagtcctcac
ctcgtcagtaaatacgccctcattgagaacctcgacttcctgtactatctgcgtcacgga
cgaccatcgtttgcctacggaacgtttctcgtccaacagctagccaactccaacgaagtg
aagtcgcagctcagtcatgcggcggagcaggcctacagcctggccatgctgcatttcagc
gttccctctgtggcagctgcatgtgtgtgtttctgcgagctcctgggtgtgtgtagccta
aagttgcgggtggacctcaaagccctcagtctgatcctccgactccggagccagaggcct
ggagggaccagcacattctcccttaaagacttactggctcctaaaggcagtaagctggtg
gaggtggagagggagacagcggaggagctgctctttgacttggaggcagctgtgaaggac
agtttggagaggaagggcatcagcaggtcatcctatgaggcaggtcaggagtgggctctg
cccatacagttttgccagctacatgccctgcccctgagcagcgtgtacccacacgactgt
gcagccgacagccagtggctacacttcctgctctttgtccagctgcacagctacccccct
cagcaggtgaggtccctggcgacccagttcagcccagccctgcaggcccacctgaccctg
gccttccagaacctgcagctcagctctcagtggagggtgggggaggtggaagacagggag
gcccagggtcaagtcaccctgcccagcgaggaagcctccgacccccccaaggagctgttc
caggtgctgctgcagagccaggagcaggccagcccctggagacacctcctgggggaggcc
ctggcacagcactgccccacgctcaccacactagctgcctgtcatcaggaagccgacctg
ctccagtgcctctgcgtctgggtcctgacctctgtggatgaggtcattgccacagaggct
accgcccacctggaggagagcccgcgaagtcatgagtggaacctccacgacctgtcaatc
atctggaagacactgctgaggaaatgcagggtcaggcctctcatacgaggcttccagctc
ttccagagggactctcccctgatccatgtgctgctcatgtacgagctgtgctacgactac
aaaaagtaccctgaagccaagaagaaactcattgagttccagaaatgcctgatcacgctg
aggagcagtggtgctcatgcaccagcgggcatccctctccagtgggtggagtgccaggcc
tcagtcctcctgttgaccatgatgcaacagtgctccacacaatacgagctgcgcagacta
ctgcagctgctcgcagacatggagcgcctgctcaagtctaacggcccggacttcaagaag
ctcagcttcctcagccaggttctccaggacacctcggtgtctctctctcccaggctgctt
gagagctattcccctgacatcctgcagggagagtgccagagcatgttggagaagctgcaa
gacagcggcctgttccacaaggcccgccaggtggccgagctggcagggctgcccattgac
agcctggtcatcaacgagttactccaagacctcagtgccctgaaggccaagcggcactgg
gagaggagggagacccgggtgtccttctggagaaaatgccacgagcagttcaggactaac
agcactagccctggggccgcctcagagttcttcctggcccaggcaggtgcctctgagcct
caccggggctccgtggccgagacagagctgctgtgtgtccaggagaggtgccttctcctc
agcctggccggccactggctgtcctggctcaccctagctcccctggcacgtctcgaggac
ctggagaagcagctgtggactagccgagtgcgccagcaagtcctgctcaccgccatggag
aaggagagcatgttcgccctcccggtgcccaccatagcccccgaggaaaactcctacgag
gccctgatcagggagttctccttctccaagatggcagtgctcaacgagcccaggtacctg
agcttagacggcctgcccagcttctcccctgaggaagagggtggggagaagactgggtcg
gaggagcagggtgctctggctatcctggtggggcagctgttggacgaagggtgtatccac
gaagcgagccgtgtgtgccgctacttctccttctgctcccgggacatgtgggtagtgctg
cactgcagaggcctggcctcaggcgagctccaggctggcctgcaggacatgctcaccttt
gagggcctgcccaagaagagcattcccagctcaactagttttagcagcctgtcctccttt
gtgatggtgccctctccagaggatcaaacggtgactcagctccagatactggtggacgaa
tgtcgccacggaaagagctactgcaagcaggtcctgagtctctacgagctctccaaggag
ctgcagtgttcatacagtgagatctcagccgaggagcctcaggcggtgctgtgtaaggtg
ctactgtcccagcagccggagcgctataagaaggcccaggccttcatcagtgtgcagggc
ctgcagcctgacaccgtggcccagcttgtatccaccgccgtggtccagggcctgttggcc
tctgcacaggacggagagactgcagagaagcagatgttcagtccagaggaagggagagag
tccttcttgcagctggccaagctgtgtggggaccccaacctggtgggcatcaaactgctg
gaccacatccccactgtgccactgggagagctcggctgcacggtggagctgttgatcctg
gcccacgactgcttcagtctgacctgtaacatggagggcatagtgagggtgctgcaggct
gcccgccaccttagccacgcacacctggcccacagcgaacactacagcctgctggtgcgt
ctcctcactggcatcggcagatacaatgacatgacctacatcttcgacctgctcaaccag
aaccaccgcttcgagatgctgctcaggaaaaaagtggagtcgaacttccggctgaagacg
gccctgctggactacatcaagcggtgtttgccgggggacagtgagaagtacaacatggtg
gccctatgcttcagcatgtgcagagagataggagagaaccacgagggagccgcccgcacc
cagctcaaactgatcgagtcccagccttgggcagtgacccctgaactcaaaagtgccttg
ataaaggttcttactctcctgaaggatgctgcagagagctattctaaggactcgtgtgta
cgccaggcagcacgttgtgtcaaaatggcaaagctgaccacactccagctccacttcctg
aaccacggtcaagaccaacgtgtcataaacctgcgccaatcagatctccttggtgctata
gtggcactgccccgctgttaccaggcttttgtgttgtcggaggcctacgactacagtcca
gactgggcggaggtgctctaccagaaggtcatcctcagtggagactttgcttacctagag
gagttccgacttcacaggccactccccgcctgcctgtttgaggacatatcccaaaaattg
actcacaacacgcctccgagcagtgcgggccagaacctgaagagactattgcaacactgt
gatgacgtttacacctactacaagcttgcgtatgaacacaagttcttcgacgtggccaac
atgttacttcaggactccaaaacaagcagttaccttaatgacaggctaggtactaggtag
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integrated database retrieval system
