Salmo trutta (river trout): 115197712
Help
Entry
115197712 CDS
T08542
Name
(RefSeq) general transcription factor IIH subunit 1 isoform X1
KO
K03141
transcription initiation factor TFIIH subunit 1
Organism
stru
Salmo trutta (river trout)
Pathway
stru03022
Basal transcription factors
stru03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
stru00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
115197712
09124 Replication and repair
03420 Nucleotide excision repair
115197712
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
stru03021
]
115197712
03400 DNA repair and recombination proteins [BR:
stru03400
]
115197712
Transcription machinery [BR:
stru03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
115197712
DNA repair and recombination proteins [BR:
stru03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
115197712
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
BSD
PH_TFIIH
GeBP-like_C
Motif
Other DBs
NCBI-GeneID:
115197712
NCBI-ProteinID:
XP_029615348
UniProt:
A0A673WNY6
LinkDB
All DBs
Position
7:57359129..57403949
Genome browser
AA seq
550 aa
AA seq
DB search
MAALSEEVLLVVKRVRQRKQDGTLYLMAERIAWGPEGKDRFTVSHQYADIRCQKISPDGK
AKIQLQLILHTGESTNFHFSNESTALKDRDAAKDLLQQLLPKFKKRANKELEEKNRMLQE
DPVLFQLYKDLVVSQVISAEEFWANRLSMNSVDHSFSNNKQEVGISAAFLADIRPQTDGC
NGLRYNLTSDIIESIFRTYPAVKQKYGENVPHNLTEKEFWTRFFQSHYFHRDRINTSLQD
IFSECAKQDEKGLKSMVVQGVKNPMLDLLSLEDKTSEEGYGSNSTAPSTSNTNKTVKENS
NSAIIKRFNHHSTMVLAAGSGKKADVPNDQASETSSTDGNSRDSDFFQPPIKKVRIQEAV
EYEDLHRENRKKTVTLNLKKSDRYCHGPVPLLPQQYTTSQDIINSVNCIQHEIASYKPCL
TQVMSSSTASSAITALSPGGVLMQAGAQQAINQMVPTDIQGELKHLYTAAGELLRHFWSC
FPVNTPFLEEKLVKMRSNLERFQMTKLRPFQEKIQRQYLSPNLTGHLMDMFQMAYNKFHA
WQTRRMLRKT
NT seq
1653 nt
NT seq
+upstream
nt +downstream
nt
atggcagcgttgtcggaggaggtgctgctggtggtgaaaagggtccgacagaggaagcag
gacgggaccctctacctgatggcagagaggatagcctggggaccagagggaaaagaccgc
tttaccgttagccaccagtatgctgacatacgctgtcagaagatcagcccagacggcaag
gccaagattcagctgcagttgatcctacacacgggggagagcaccaacttccacttctcc
aacgagagcactgccctgaaagaccgcgatgcagccaaggaccttctgcagcagctgctg
cccaagttcaagaagagggctaacaaggaactggaggagaagaacagaatgttacaggaa
gatccggtgctgttccagttgtacaaggatctggtcgtaagtcaggtgatcagtgctgaa
gagttctgggccaatcggctgagcatgaacagcgtggaccactccttctccaacaacaag
caggaagtgggcatctcggcagccttcctggcggacatacggcctcagacagatggctgt
aacggcctgagatacaaccttacctctgacataatagagtctatcttcaggacgtaccct
gcagtgaaacagaagtatggtgagaacgttcctcataacctgacagagaaggagttctgg
acacggttcttccagtcccactacttccaccgagaccgcatcaacacgagccttcaggac
atcttctcagagtgtgccaagcaggacgagaagggcttgaagtccatggtagtccaagga
gtgaagaatcctatgctggacctgctgtcacttgaggacaagacgtcagaggagggttat
gggtctaactccacagcaccttctacgtccaacactaacaagacagtgaaggagaacagt
aactctgccatcatcaagaggttcaaccaccacagtaccatggtgctggccgcaggctcc
ggaaagaaagcggatgttcccaacgatcaggccagtgagactagcagtactgatggaaac
tcaagggactcggacttcttccaacctccaattaagaaggtgagaatacaagaggccgtg
gagtatgaggaccttcacagagaaaacaggaagaagacagtcactcttaacctgaagaag
tctgacaggtactgtcatggtcctgtgcctctcctgccccaacagtacaccaccagtcaa
gacatcatcaactctgtcaactgtatacagcatgaaatagccagctacaagccctgcctt
actcaggtgatgtccagcagtacagccagttctgccatcactgccctctccccagggggc
gttctcatgcaggcaggagcacagcaagccattaaccagatggtccccaccgacattcag
ggtgagctgaagcatctgtacacggctgctggggagctgctgagacacttctggtcttgt
tttcctgtcaacacacctttcctggaagagaagctggtgaagatgaggtctaacctggag
agattccagatgacaaagctccgccccttccaggagaagattcagcgccagtacctcagt
cctaaccttacaggacacctgatggacatgtttcagatggcctacaataaattccacgcc
tggcaaacacgtcggatgttgaggaaaacctga
DBGET
integrated database retrieval system
