Salmo trutta (river trout): 115198400
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Entry
115198400 CDS
T08542
Name
(RefSeq) apoptotic chromatin condensation inducer in the nucleus-like isoform X1
KO
K12875
apoptotic chromatin condensation inducer in the nucleus
Organism
stru
Salmo trutta (river trout)
Pathway
stru03013
Nucleocytoplasmic transport
stru03015
mRNA surveillance pathway
stru03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
stru00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
115198400
09122 Translation
03013 Nucleocytoplasmic transport
115198400
03015 mRNA surveillance pathway
115198400
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
stru03019
]
115198400
03041 Spliceosome [BR:
stru03041
]
115198400
Messenger RNA biogenesis [BR:
stru03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
115198400
Spliceosome [BR:
stru03041
]
Complex C
Other components
EJC/TREX
115198400
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RSB_motif
SAP
Motif
Other DBs
NCBI-GeneID:
115198400
NCBI-ProteinID:
XP_029616166
LinkDB
All DBs
Position
8:complement(19631054..19658371)
Genome browser
AA seq
1712 aa
AA seq
DB search
MADEDVTLNGKPLQSLRVADLKAALEQRCLPKSGAKNTLIKRLKGALMLENLQRTSTPHI
GLQPNSQIGEEMSQNSFIKQYLAQQQELLRQRLEREAREAAEADESPAGPEEEEHTEDGN
DSDSYNPDKHRPMPSQPPLTRAEEEGGGGGGPMMMGHQGQGMMMGKGQGMMGQGMMSRRP
DFGPSSVPQESPDAPGGPGSWMQQRPSLQHGLHHEEPTTPSPPRAVASLSVRVLGDPERQ
GLPPSMPPRAQTQEKEGTAPADDDRPAHSVLHLSRSARAAAGSNRVQEDCDDDDDSSEED
EDEWGPAAKRGGGRGLAPPPQPQQPSPSVPAARERSRRKLQPPQHIPPQQVVHQPPMQLR
QPTPPPSPPPELSFPLPDTPKQSPPDMDEEPEGAGAGVSVRLPPGGLQRQDSDSSSRSSS
PEPRAKRRPGPLSLLARKMASEGAYGKRGEGAPADGQTGPRGEASRPGDGVGSSPGAGAG
PGAEVVMFPGAAITHTGGSSTGHTGFVTVPEVPAPVVMFESGAQSHPLPLLSVAAVPSIN
LTTEPQGPSGETAQKKTEKETKQAEEEERKMKQVEEESHLPPWQRGRDLTLPSASSQFGS
GGSEEPVMDQGDTPKKSPFGRDKPLSSTPSSAMTTTTSPPAIAPKKPRMFSDTSSGSMTS
PPKPVQQGSVVVTTPEELPEPQVVLVSGAQHHTDDTMEVTALNKASVEKPGWKAGGDDEK
MKGRASLAEKERASQAEKERASQAEKERASLAEKERASQAEKERASQAEKERASLAEKER
ASQAEKERASLAEKERASQAEKERASQAEKERASLAEKERASLAEKERASQAEKERASQA
EKERASQAEKERASQAEKERASQAEKERASQAEKERASQAEKERASQAEKERASQAEKER
ASQAEKERASQAEKERASLAEKERASLAEKERASLAEKERASQAEKERASQAEKERASQA
EKERASQAEKERASQAEKERASQAEKGTPKPGETRRRGPEETVEVEPMGPVLPPSYPGKR
EDERKGKEDERRRKKEDERKKEAERGRRGERARHRRSSPSSGGDSSSSDSDSGSSSSRSS
GSTSSRDKKKKTGTGKGRGDEKRRLYKGGEKKQSAREVKQSSLSEPSGPMEVERPDPVQT
QPTPVGDTQNSEGCMEESTTPKAFAARKISLTTGSKSSPEGGGAAAGGEAESGTAAGRKR
RWGSSTAVNAKKPSISITTDSLKSLIPDIKPSQDAVVDLHPDDIQLSGDEDTTREDQGLD
KGLKIRRTVTQVVPSENQENGQGERDEEEEEEEEVKKQEHDRERTQKEKRKDSYSEDTME
SQSSATHDTDAKKVTPSDTLVRRSISQQKSGVSVTIDDPVRTAKQPSPPRGKVSNIVHVC
NLVRPFTLGQLKELLNRTGSVVEDGFWIDKIKSHCYVTYSSTEEAVATRAALHGVKWPQS
NPKVLSVDFCEQNELDFHRGLLTVDPREEHRPQPGVGPGGPKVRPGVLPPLMDGRGDRGV
VGGVRDQWAEREREMERRERTRAEREWDRDKVRDFGGKPGEERERGRRSRSLDRERRRKE
RDGKEKKTDKKDEPPAKLLDDLFNKTKAAPCIYWLPLTEEQANQRGKEREERQKERERRR
KEQQEEEDKKREEERKERIKSREKEGGAAASTGSVSVRGSEGDRDRERERGREREGEKRR
DSGGFRPRGPDTKPSAGFRRSRSRSNPRDKRR
NT seq
5139 nt
NT seq
+upstream
nt +downstream
nt
atggcggatgaagatgttacgctgaatggtaaacctctacaatcgctccgtgtggcagac
ttgaaagccgctttggagcaacgatgcctccctaaaagcggggcaaaaaatacactcatt
aagcgactgaaaggggctctaatgttggagaatcttcagaggacctccactccccatatt
ggcctccagcccaactcccagattggggaggagatgagccaaaacagcttcataaagcag
tacctggctcagcagcaggagctcctacgccagaggctggagagagaggccagggaggca
gccgaggctgatgaaagcccagcgggccccgaggaggaggagcacacagaggatggcaac
gacagcgattcctataaccctgacaagcatcgccccatgccctcccagcccccactgacc
cgggctgaggaagagggaggaggtggaggagggccaatgatgatggggcaccagggccaa
ggaatgatgatggggaaaggtcaggggatgatgggccaagggatgatgtctcgcagacca
gactttggcccaagctctgtgcctcaggagtctcctgatgcccctggaggtcctggatcc
tggatgcagcagcgtccctccctccaacatggcctccaccacgaggagcccaccaccccc
tccccgccccgagctgtggcctcactgtcggtgcgcgtcctaggggaccctgagcgccag
ggcctgcccccgtccatgcccccccgcgcccagacccaggagaaggaaggcaccgccccg
gcggatgacgaccgacccgcccactctgtgctccacctcagccgctctgcccgggcagca
gctggcagtaaccgtgtccaggaagactgtgacgatgatgatgacagcagtgaggaggat
gaagatgagtggggacctgcggcgaagagaggtggcggaagagggttagcccctcccccc
cagccccagcagccttcccccagcgtcccagcggcccgagagagatccagacgcaagctc
cagcctccgcaacacatcccccctcagcaggtagtacaccagccccccatgcagctccgc
cagcccaccccgcccccctctccaccaccagagctctccttccccctccccgacaccccc
aaacagagcccgcctgacatggatgaggagccagaaggagcaggggctggggtgtccgtc
cgccttcctccaggtggcctccagaggcaggactctgactccagctcccgatccagcagc
ccagagccccgagccaagcgccgacccggacccctctccttgctggcccgcaagatggcg
tccgagggagcttacgggaagagaggcgagggtgcgccggcggacggccagacaggtcct
cgaggggaggcttccagaccaggagatggagttggcagcagcccaggagctggagcagga
ccgggggctgaggtggtcatgttccctggggctgctatcacccacacaggaggcagcagc
acagggcacacgggattcgtcactgtacctgaggtccctgcaccagtcgttatgtttgaa
tcaggagcccagtcccatcctctccctctgctgtctgtggcagctgtccccagcataaac
ctcaccaccgagccccagggtccatctggagagacggcacagaagaagacagagaaagaa
acaaagcaggcggaggaagaggagaggaagatgaagcaggtggaggaggagagtcacctg
ccgccatggcagcgtggacgtgacttgacgcttccatctgcgtcttcacagtttgggtct
ggggggtcagaggagcctgtgatggaccagggagacaccccgaaaaagtcacccttcggc
agggacaaacccctctcctccactcccagctcagccatgacgaccaccacctccccgcct
gccatcgcccccaagaaaccccgcatgttctccgacacctcctccggctccatgacctcc
cctcccaaacctgtgcagcaggggtcagtggtggtgaccaccccagaggaactccctgaa
ccccaggtagtccttgtctcaggggcccagcaccacacagacgacaccatggaggtcacc
gcactgaacaaggcgtccgtggagaagcctggatggaaagctggaggagacgatgagaag
atgaaggggcgtgccagcctggcggagaaggagcgtgccagccaggcggagaaggagcgt
gccagccaggcggagaaggagcgtgccagcctggcggagaaggagcgtgccagccaggcg
gagaaggagcgtgccagccaggcggagaaggagcgtgccagcctggcggagaaggagcgt
gccagccaggcggagaaggagcgtgccagcctggcggagaaggagcgtgccagccaggcg
gagaaggagcgtgccagccaggcggagaaggagcgtgccagcctggcggagaaggagcgt
gccagcctggcggagaaggagcgtgccagccaggcggagaaggagcgtgccagccaggcg
gagaaggagcgtgccagccaggcggagaaggagcgtgccagccaggcggagaaggagcgt
gccagccaggcggagaaggagcgtgccagccaggcggagaaggagcgtgccagccaggcg
gagaaggagcgtgccagccaggcggagaaggagcgtgccagccaggcggagaaggagcgt
gccagccaggcggagaaggagcgtgccagccaggcggagaaggagcgtgccagcctggcg
gagaaggagcgtgccagcctggcggagaaggagcgtgccagcctggcggagaaggagcgt
gccagccaggcggagaaggagcgtgccagccaggcggagaaggagcgtgccagccaggcg
gagaaggagcgtgccagccaggcggagaaggagcgtgccagccaggcggagaaggagcgt
gccagccaggcggagaaggggactcctaaacccggggagaccaggagaaggggacctgaa
gagactgttgaggttgagcccatgggacctgttctacccccttcttacccaggtaagaga
gaagatgagaggaaggggaaggaagatgagaggaggaggaagaaggaagatgagaggaag
aaggaagcagagcgaggcaggcgtggggagagggcgaggcacaggaggtcatctccctct
agtggtggcgactcttcatcctccgactcggactctgggtcctcttcgtcacgttcctct
ggctccacctcctcccgggacaaaaaaaagaagactggcacaggaaaaggaagaggggat
gaaaagagaagactgtacaaaggaggagagaagaaacaatctgccagggaggtaaagcag
tcttccttgtcagagccatctggccctatggaggtggagaggccagacccagtccagacc
cagcccacccctgtcggggacacacagaacagtgagggctgcatggaggagagcaccact
cctaaagcgttcgctgcacgcaagatctccttgaccacaggcagtaagtcgtctccagag
ggaggaggagcagcagcagggggggaggcagagtccgggaccgccgctgggaggaagagg
agatggggatccagcacggccgtcaacgccaagaaaccatccatcagcatcaccacagac
tcactcaagtctctgatcccagacatcaagcccagtcaggatgctgtggtggatctccac
cctgatgacatccagttgtctggggacgaggacaccaccagggaggaccagggtctggac
aagggcctcaagatcagacgcactgtcacacaggtggtcccaagtgaaaaccaggagaat
ggccagggagagcgagatgaggaggaggaagaggaggaggaggtgaaaaaacaggagcat
gacagagagaggacacagaaagagaagaggaaggacagctactccgaagacaccatggag
tctcagtcctccgctacacacgacaccgacgctaagaaagtcactcccagtgatacgctg
gtgcgtcgctccatcagccagcagaagtcaggtgtgtctgtcaccatcgacgacccggtt
cgcaccgccaaacagccctctccgcccagaggcaaagtctccaacatcgtccacgtctgt
aacctggtgcgacctttcaccctgggtcagctgaaggagctgctgaacaggacaggctca
gtggtagaggatggcttctggatcgacaagatcaagtctcactgctacgtcacttactcc
agcacagaggaggctgtggccacacgagctgctctccacggggtgaagtggccccaaagc
aaccctaaagtcctcagtgtggacttctgtgagcagaatgagctggactttcacagaggc
ctactgactgtggatcccagagaggagcaccgcccccagcctggtgtgggtcctggaggt
cccaaagtccgaccgggcgtgctgccccctctgatggacgggcgcggggaccgcggcgtg
gtcggaggggtgcgggaccagtgggcggagagagagagggagatggaacgccgggagagg
accagagcggaacgtgagtgggaccgggacaaggttcgagacttcggaggcaaaccagga
gaggagagggagagagggaggagatctcgctccctggatagagagagaaggcggaaggag
agggacggcaaggagaagaagacagacaaaaaggatgagcctcctgccaaattactagac
gaccttttcaataagaccaaagcagctccctgtatatactggctccccctcactgaagaa
caggcaaaccagaggggaaaagaacgggaagagcgacagaaagaacgagagaggaggcgg
aaagaacagcaggaggaggaggacaagaagcgagaggaggagagaaaggagagaattaaa
agcagagagaaggagggaggagctgcggcaagcactggaagtgtgagtgtccggggatct
gagggagaccgggatagagagagggagcgagggagggagagagagggggagaagaggagg
gacagtggtggattcagacccagaggtcctgatactaaaccctctgctgggttccgacgc
tcccgtagccgtagcaacccccgagacaaacgccgttga
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integrated database retrieval system
