Salmo trutta (river trout): 115198584
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Entry
115198584 CDS
T08542
Name
(RefSeq) collagen alpha-5(IV) chain-like isoform X1
KO
K06237
collagen type IV alpha
Organism
stru
Salmo trutta (river trout)
Pathway
stru04382
Cornified envelope formation
stru04510
Focal adhesion
stru04512
ECM-receptor interaction
stru04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
stru00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
115198584
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
115198584
09142 Cell motility
04820 Cytoskeleton in muscle cells
115198584
09150 Organismal Systems
09158 Development and regeneration
04382 Cornified envelope formation
115198584
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
stru04147
]
115198584
00536 Glycosaminoglycan binding proteins [BR:
stru00536
]
115198584
Exosome [BR:
stru04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
115198584
Glycosaminoglycan binding proteins [BR:
stru00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
115198584
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
C4
Motif
Other DBs
NCBI-GeneID:
115198584
NCBI-ProteinID:
XP_029616494
Ensembl:
ENSSTUG00000031494
LinkDB
All DBs
Position
8:25168977..25256833
Genome browser
AA seq
1689 aa
AA seq
DB search
MNKNLKSLRNLAVGLVLVTLCIVVQESESAACHGCAAGSKCDCSGVKGGKGERGFPGLQG
QPGVPGFPGPEGPIGGRGEKGSDGPSGPSGPKGIRGPPGLPGFPGTPGIPGLPGQDGPPG
PRGTAGCNGTKGDRGFPGSPGFPGLEGRSGPPGLPGQKGDPGDVISNDRFGQKGGVGLPG
LPGVPGNPGPAGLSGPIGPPGPRGYEGRSGPPGPPGPKGNMGLNFQGPKGDKGDPGLQGP
PGPPGQVGEQKRPTELEIQRGEKGDQGLPGPAGDPGYPGPPGVSGGSKGEKGEPGEAGKR
GKPGKDGDPGPAGFPGSKGDPGGPGLPGRDGDRGDKGDRGYPGPPGVVINGQTGARVGPK
GEPGFPGSAGRKGDRGQPGLSGPPGQPGTPGTGGVGQPGSPGFPGERGQKGDEGQPGISR
PGPPGRNGAPGLQGPPGPPGAAGVSTGGGNCLGGAPGLPGQQGDRGFQGETGQKGDKGET
CVNCFSRGNSIPGAPGPPGPPGFPGGPGGPGVKGDRGYPGGPGPSGSSGLPGPQGAPGFP
GEKGDPGEAIAVDGVRGDKGDTGFPGPPGLPGLDGGPGRNGVPGAPGPKGTSGSLLVKGE
RGPPGEPGLQGLPGDRGVPGSPGVGPQGPPGEKGVQGVSGRTGTPGAPGTKGEPGQTIAE
KGLPGPRGQDGDPGLPGNPGNPGGPGQPGFPGLPGAKGDPGLSGIGLPGPPGAKGFPGSS
GVPGSPGGPGRPGVDGLPGEPGGPGAKGEPGFGLPGPQGPPGFPGPKGLPGPKGDSGFPG
NPGSPGRSGFDGGPGAKGDSGINGIPGARGPPGSPSIGSQGIPGPIGPPGPMGSPGYSGA
NGEKGDPGPPGLDIPGLPGDRGSPGFPGSPGGVGPQGNPGGPGRDGLPGLPGGKGDMGVM
GAPGPLGSPGNPGAPGFPGPKGDDGFPGRPGGPGGSGLKGDRGEPGIVGLPGPSIPPQEL
KGGKGEPGAPGLGGLPGQKGIPGLPGDAGIPGQDGRPGLPGPQGPKGDAGIPGGSGSPGA
PGAKGNMGEMGFPGPTGAKGTPGQSGRSGGPGSSGSPGFPGAKGEPGSPGFGSPGATGPK
GEPGQSGFPGQNGVKGTPGTPGLPGFPGGPGAKGDPGLPGFQGSPGIPGPKGLDGIPGNP
GLSGPPGRPGENGRAGSPGFPGDKGQAGRDGIPGPAGVKGDPGLPGFGGPGSPGLPGLPG
AKGDLGAPGSSGSPGFPGQKGEMGFPGLPGSPGSVGPPGAPGVALQGPKGNAGPPGPPGR
GGPEGPPGPPGSEGPRGPVGSGGTKGEKGIPGIPGSPGFPGAKGEFGSPGFPGNAGLPGT
KGLKGDIGLPGVPGFPGPKGDSGIAGSSGLPGDSGDVGPAGPPGDPGFAPAPIVLKGERG
PPGPSGLPGGRGATGPPGLEGLSGQPGQPGDPGPEGPPGFSGASGRKGDPGPAGQPGERG
YPGPPGSDGLQGPPGPSGSASVAHGFLITRHSQGEDVPLCPEGTGLIYDGYSLLYVQGNE
RAHGQDLGTAGSCLRRFSTMPFMFCNINNVCNFASRNDYSYWLSTPTPMPMTMAPITGEG
IKPYISRCAVCEAPAMVIAVHSQTIQIPTCPSYWEPLWIGYSFMMHTSAGAEGSGQALAS
PGSCLEEFRSAPFIECHGRGTCNYYGNSYSFWLATVDQSEMFRKPQSETLKAGNLRTRVS
RCVVCMKRT
NT seq
5070 nt
NT seq
+upstream
nt +downstream
nt
atgaataaaaacttgaagagtctgcgaaatctcgcggtggggttggtgctcgtaactctg
tgtatcgtggtccaggagtcggaatcagcggcgtgtcatggctgtgcagcgggatcaaag
tgtgactgcagcggagtaaaaggaggcaagggcgagaggggtttcccaggactacagggt
cagccaggcgtaccagggttccccggacctgaggggccaatcggaggcaggggagagaag
ggtagtgacggaccttcagggccatctggtccaaaaggaattaggggacctcctggactg
cccggattcccaggaacaccaggaattccaggtctcccaggacaggacgggcccccgggc
ccaagaggaactgcaggctgcaacggaactaagggtgacagaggattccctggaagtcca
gggttccccggactggagggccgatcgggtccacctggtttgccaggacaaaagggagac
ccaggtgatgtcatctcaaatgaccgctttggacagaaaggaggtgtaggtttacctggc
ttgcctggagttcctggtaacccaggccctgcaggattgtcaggccctatcggtccacct
ggccccagaggttatgagggtcgttccgggcctcctggtcctcccggtcctaagggtaac
atgggattgaacttccaaggtcccaaaggagataagggggatccaggtctgcaggggcct
cccggtccaccaggacaggtcggggagcagaagagacccaccgagttagagatccagaga
ggagagaaaggtgatcaaggtttacctggtccagctggtgatcctggctatcctggtccc
cctggtgtatctggaggttcgaagggagagaaaggagagcctggagaagcaggcaaacgc
ggcaaaccggggaaagatggcgacccgggtcctgctggattccctggtagtaaaggagac
ccaggcggcccaggtctgccaggtcgggatggtgacaggggggacaaaggtgaccgtgga
taccctggacctccgggcgtggtgattaatggtcagacaggagcacgtgtggggccaaaa
ggagagcctggtttccccgggtcagcaggaaggaaaggagacagaggacaacctggtctc
tcaggtcctccaggccaaccaggaaccccaggtaccggaggtgtaggccaacccggttcc
ccaggcttcccaggtgagaggggccagaagggagacgagggccagccaggcatctcccgc
cctgggcccccaggacgaaatggggcccctgggcttcagggaccaccaggccctcccggg
gccgcaggggtctccacagggggcggtaactgtttaggaggggcccccgggttaccggga
caacaaggagacagagggtttcaaggagagaccggacagaaaggtgacaagggagaaacc
tgtgtgaactgtttctcacgtgggaactccatccctggagcaccaggccctcccggacct
cctgggttcccaggtggaccaggaggaccaggggttaaaggtgacagaggatatccaggt
ggcccaggaccctcaggttcttctggtttgcctggtccccagggtgcacctggtttccca
ggagagaagggtgacccaggtgaggctattgctgtggatggggtgaggggcgacaaggga
gacacagggttccccggaccccctggcctgcctggtctggacggaggacctggtcgcaat
ggagttcctggagctcctggacccaaaggaacatctggctctctgttagtgaagggtgag
cgagggcctccaggtgagcccggtctgcagggtctcccaggtgacaggggtgtccccgga
tccccaggcgtcggcccccaggggccccctggagagaagggtgtgcagggcgtctcaggg
agaacgggaacacctggagcaccaggcactaaaggtgagccgggtcaaacgatagcagag
aagggactcccaggacccaggggacaggatggagaccccggtcttcctggaaacccaggc
aaccccggcgggccaggacagcccggtttccccggcttaccaggtgccaagggcgacccc
ggcctctccggcattggactgccaggaccccccggcgctaaaggattcccaggctcatct
ggtgtgccaggtagtcccggaggtccaggaagaccaggagtggacggcctccccggtgag
ccaggtggacctggagctaagggagagccaggattcgggctgccaggtccccagggccct
ccaggcttccctggacccaaaggattacctggacccaaaggagactccggtttccccggc
aaccccggctcgcccggacgttccggcttcgacggtggccctggtgccaaaggtgactct
ggtatcaatggtatacccggagcccgtggacctccaggttcgccctccatcggctctcag
ggcatccccggccccattggacccccaggacccatgggctctccaggatactcaggcgcc
aacggagagaagggagaccccggtcctcccggcctggacattccagggttgccaggcgac
agaggaagtcccggtttccccggcagccccgggggagttggaccacagggtaaccctggc
ggccctggccgagacggactgcctggcctgcctggtggtaaaggagacatgggtgtgatg
ggagctcctggacctctggggtcccctgggaaccccggagcccccggcttccctggacct
aaaggtgacgatggtttcccagggcgaccaggtgggcccggcggttcaggtttgaaggga
gacaggggagagcccggtatcgtgggactcccaggacccagcattcctccccaggaactg
aagggtggcaagggagaaccaggagctccaggtttgggaggactgccaggtcaaaagggt
atccctggtctccctggagatgctggtataccaggacaggacggacgacctgggttgcca
ggacctcaaggtcccaaaggagacgcaggtatccctggaggatcaggctcaccaggagcc
ccaggagcgaaaggcaacatgggagagatgggcttcccaggacccacaggggcgaaagga
actccgggtcaatcaggtcggtcgggtggacccggtagttcgggatcaccagggttccct
ggagctaagggagagcccggttcccctggctttggttccccaggagctacaggtcccaag
ggtgagcccggtcagtcagggttccccgggcaaaacggagtaaaaggaactcccggaaca
ccaggtcttccagggtttcctggcggccctggcgccaaaggtgaccccggcctcccagga
ttccaaggttctcccgggattcccgggcctaagggtctggatggtatccccggtaacccc
ggtctcagcgggccacccggccgaccgggagagaacggccgtgccggatcacctgggttc
ccaggggacaagggtcaggcgggtcgtgacggaatccctggaccagcgggagtcaaagga
gacccaggtcttcctggtttcggtggccccggttctcctggtctcccaggattaccaggt
gctaagggagatcttggcgcccctggttcttccggtagccctggcttccctggtcagaag
ggagagatgggtttccctggcctgcctgggtcccctggcagcgttgggccccctggcgcc
ccaggtgtggccctccagggtcccaaaggtaacgccggcccccccggaccccctggaaga
ggagggcccgaaggtcctccaggtcctcctggctccgaaggtccccgtggccctgtcggc
agcggagggaccaaaggtgagaagggaattcccggaattcctggatcgcctgggttccct
ggagcaaagggagaattcggatcgcccggattcccgggtaatgctggccttcctggtacc
aaagggctgaagggagacatcggactgcctggagttcccggattcccaggaccaaaggga
gattctggaatcgctggatcatctggtctccctggagacagcggagatgttggccctgct
ggacccccaggcgacccaggttttgctccagcccccatcgtgctgaagggagagcgtggc
ccccccggcccttcaggtctaccaggcggccgtggcgccacaggaccccccggactggag
ggactctcaggtcagcccggtcagccaggagaccccggtcctgagggacccccaggattc
agtggagcctccggccgcaagggagacccaggacccgccggacagccaggtgagcgtgga
tatcccggtccccctggttcagatggcctgcagggccccccaggtccatctggatctgcc
tctgtggcgcacggcttcctgatcaccagacacagccagggcgaggacgtccccctctgc
ccagagggcaccggcctcatctacgatggctactctctactctacgtacagggcaacgag
agggcacacggacaggatctgggaactgctggtagttgcctgcgccggttcagcaccatg
ccattcatgttctgtaacatcaacaacgtgtgtaacttcgcctcccgtaacgactactcc
tattggctgtccacacccacgcccatgcccatgactatggcccccatcaccggagagggc
atcaaaccttacatcagcaggtgtgcagtgtgtgaggcccctgccatggtgatcgctgta
cacagtcagaccattcagatccccacctgccccagctactgggaaccactgtggatcgga
tactccttcatgatgcacactagtgctggtgctgagggttcgggtcaggctctggcctct
cctggctcctgtctagaggaattccggagcgctcccttcatcgagtgccacggtcgggga
acctgcaactactacggcaactcctacagcttctggctggccaccgtcgaccaatcagaa
atgttcaggaagccacagtcggagacgctgaaagcaggtaacctgcggacacgcgtcagc
cgctgtgtggtctgtatgaagaggacgtaa
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integrated database retrieval system
