Salmo trutta (river trout): 115199824
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Entry
115199824 CDS
T08542
Name
(RefSeq) vacuolar protein sorting-associated protein 13A-like isoform X1
KO
K19525
vacuolar protein sorting-associated protein 13A/C
Organism
stru
Salmo trutta (river trout)
Brite
KEGG Orthology (KO) [BR:
stru00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
stru04131
]
115199824
Membrane trafficking [BR:
stru04131
]
Endosome - Golgi transport
Rab GTPases and associated proteins
Rab associated proteins
115199824
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
VPS13_N
VPS13_M
VPS13_VAB
VPS13_C
ATG2_CAD
Fer4_11
DUF5764
Motif
Other DBs
NCBI-GeneID:
115199824
NCBI-ProteinID:
XP_029618162
Ensembl:
ENSSTUG00000040068
LinkDB
All DBs
Position
9:complement(9594387..9650112)
Genome browser
AA seq
3265 aa
AA seq
DB search
MVFESVVVDVLNRFLGDYVVNLDSSQLKLGIWGGDAVLRNLEIKENALSQLDIPFKVRAG
HIGRLELKIPWKNLYTQSVEATLDGVYLLIVPTASIKYDAEKEEKQLQEARQRELQRIEE
TKQKAAEQDNPALEKQDTFVEKLVTQVIKNLQVKISNIHVRYEDDVTNPNCPFSFGVSLQ
NLSLQTADENWMPCLLDEKAKLFFKLVQLDNLFAYWNVNSMLYSNHMPDEALRCLQDSIP
GGSTPMNHDFIFRPITADAKLRMNPRSDVDFSSPKVDLVVNLREVAVELNRPQYISILEL
LGSVDMMSRNLPYRKYRPQVHVHTNAYLWWQYVITGIMEVDVKPRLHMWSWQHIRCHRQT
VKQYRELYKAKITSKKPTEKQLRELEEPERTLDIFNITLARQQAEMEASKAGLRIFRPGV
KVEEEESQGWLGWMWSGWSGDGGAEAKEVKTGAFDELMTSAEKAKLYTAIGYSEIAVNHN
LPKNFEDMKINFHMERMSVSMKDNKDQNEILKLTVEDLKSMLTQRPGAQAIKLSAQLSLF
EVTGLANNRPAPTLLSSRKAATVTGTPLLDILFETNPLDESADQRLRVESQPLEIIYDAV
TVNSMSTFFSPPDDLQLDDLTNATLMKLEQFRDRTSTGLMYVIETQKVLDLNVNLMASYV
IVPQTGFYDSTQNLMLLDLGHFKVSSLSREGLPQLSVGRSTIEDIMSRAYDSFDVQLSSL
QFLYSKPDGDWKKARKLRQSALHILEPVDVKVVFSRAMVVTDSRMPKFKISGELPLLSLR
ISDDKVRGVLELIDSIPLPESKPAPRNTNAHSTSKALKQSYTPQLTPRKPTMAELRNSLI
WESGSEEDLFYDAPSSPIGDRPFFPDNMPSPLQRSDSVKRRGLVKKDPKKNMTEFLMTFE
ISKLSVQLCRLSGGEEVTVLHLDIEGLGTELKLRTFDMTSYTFLREICLECPEYMDSEEK
KVHLITTLDNTEEDLLTLEYTKADKNGPEFKSEYKNTEQSVKVNFSSLDIHLHTEALLNA
MNFLISLLPPTKEVVPSQEELPTIPEEDEGEGEEGEKKEESAVAKKTSSKKSKFEDVVNL
HIRADLNCLKVFIRGQSRRIAEIRIEGLVSEVLMRKKAVEVLANLKNIVILDCDKEALYK
QCVSIADEEVFAFRMVNHTEATEGDAYLDMGKVDTSITLTVGCIQVIFLNKFVSSILAFI
NNFQVAKEALAEVTVQAAEKAATGVMELAERSTRISLDVDFNAPVVFLPQSSSSANVIVA
DLGMVTVKNRFAMVPSQMHVKIPPVMDTMTVGLSDLKMYRTTFEEGRFQGEIQLLKPVNL
DLSIQRNLSASWYHSIPDIEITAHLKPMNLILGQDDMTVVLRTLSGNLSETSDAASPPPP
PPPRTVDRSDTASTKGSQASGGTGTNPTSGNTVVTAAVVETQKSTKLKSTLKLDFKFDSM
TLVLYSPNGTEVQVLDLRDEQLKLAEFTLGTISTSVHMFSDGSMKASVKLTDCLLDDKRC
RVKKITARMMAMRPGAERNVMVEVNYKQGRDGTSLDTVVQDVYLCASMEFLLTVADIFLK
ASQQGFSSATPKNSSSTKPTAAAASKESAPVVVAKSEINVLVKNPEIVFVADLTRADAPA
LVMTTECELVMKSDPDGQLMTAVVKDLKVVACPFLKEKRNKETTVLQPCQVFFKSTQSST
SPQAMEVCINALTLKVSPIIINTVITIQSVLSPAGAETPQSELESPVPPDLWERRSWRDL
KLWFLEEEGKDEDAQSLVPLIPQGESLQLAINSICLTLEAGVGHRTVPMLLAKSSFHGDV
KNWSTLINLHSQLNLEVHYFNEVMGVWEPLLEPLEDETRDGFRPWTLGLKMKKKPVKYTG
ISEEVDYSIPDYKTVISISSKDQLNITLSKCGLGMLSNLGTAFAEAAKQASESFQKDEAP
FVVKNRLGLTVSVVHSELFSPLGREVTARRVELQNGESLNMDYRRTTTHSDQFSAMTSLV
AKDYYIQPTPVGHTSTGMIPLIKVGRGMYSVMHKDSGVTRFLVCQIYSVEGSKYIKIRSP
FQIINHFSIPFRVMEGSTCLGISLPTEEFCVPLDSYRSELRLQPVTEGDDQYDCSEGFSY
ELVSQQPGARVQQTCHRHGDSAGVLMVNIVPLKDTVTSQHTGMAGEHFDEPYILHLWPSV
LLRNLLPYPITYHLQDSEEPTPITLMDGHSAQLHTAIMDQSSLELRLLDYLGQDWQAHYG
LRGNLDEITFIVFSSLRVEEEVVRLGEGGEGKRAELDIAVHVKYDAGQTEVAIHSPYWMV
NKTGRLLQYKADDIHRKHAMDYDMPLLFSFKPHNFLQNNKVRLMISDSDLSDDFSLDTVG
SYGEVKCKGRLKDYVIGVKIDASSFSLTRIVSFVPYYLLVNRTKHVIWVGEEGQDDWTEA
RPQQAAIPFWPERDSKKLKVKVEGSRSTPQTMDFTKPENCLLLHLDNTLGGVIVDVNLSD
HSIIIRFSDYHDGAAPFLIINHTQEQTVEFYQRFRRDSSEWVADELLGLSFSVEETQPSS
QKEKDKLSPGKAMYYTWAEPSGSRSLAWQCGSYSGELKSEEDLRLDVNEEAKLYLISFYE
GLQRVALFTEDRRIYKLLCESEKAELAEQEIILSLQDVGVSLVNNSNRQEVSFIGITSSD
VVWESKPKKKSRWKPLSGKDAELLETHFKEYTESGPVDNAILDLENNFQVSLTHNGQDMR
MMQPYDAPIRRSFLPGVKVEYSVSARQSAYRVQINRIQIQNQLPGAIFPYVFYPIKLPKS
VTMDSEPKPLTDISIVTRAAGHSDISRIKYFKVLIQEMDLKLDLGFLYAVLDLFTPENAS
VMTSEQQVELFEKDIEYLKTELNDVSATDTSPISLYEYFHISPIKLHLSFSLSSGGEDGN
KEKRETEIIPVQSLNLLLKSIGATLTDVQDVVFKLAFFELTFQFRTRQQLQWEVIRHYSK
QAIKQMYVLVLGLDVLGNPFGLIRGLSEGVEAFFYEPYQGAIQGPEEFVEGMALGVKALV
GGAVGGIAGAASRITGAMAKGVAAMTMDEEYQQKRREAMNKQPSGLREGLTRGGKGLVSG
FVSGITGIVTKPIKGAQKEGAAGFFKGVGKGLVGAVARPTGGIIDMASSTFQGIKRAAET
SQDVESLRPPRFIHEDGVIRPYKEREGIGSQMLQKIENGRFAKYRYFAHAKVNESDFLMI
TKRGIFFVTKGTFGQLTCEWQYLFDEFTKEPMIVEGRRLRIEAKERVKSVFHAKEFGKII
NFRSPEIAKWVLTKLEDARESLHKY
NT seq
9798 nt
NT seq
+upstream
nt +downstream
nt
atggtcttcgaaagcgtggtggtagatgtcctaaacaggtttttaggggattacgttgta
aaccttgacagctcacaactcaagctcgggatttggggaggtgatgcagtgctcagaaat
cttgaaataaaggaaaatgccttgagtcaacttgacattccttttaaagtaagagcaggg
catataggacgcttggagttgaagattccatggaagaatctgtacacccagtcagtggaa
gccacactggatggagtctacctactcatcgtgcccacagccagtataaagtatgatgca
gagaaggaggagaaacagctccaggaggctcgccagagggagctacagaggatcgaagag
accaaacagaaagcagcagaacaagataaccctgcgcttgagaagcaggacacctttgtg
gagaaacttgtgacgcaggtgatcaagaaccttcaagtgaagatctccaacatccacgtc
cgctatgaggatgatgtcacaaaccccaattgccccttttcatttggagtgtcactgcag
aacctcagccttcagacagcagatgagaattggatgccttgtctcctggatgagaaagcc
aagctgtttttcaagcttgtccagttggacaatctctttgcttactggaatgtgaactcg
atgctgtactccaatcacatgccagatgaggccctgcgatgcctccaggacagcatcccg
gggggttccactcccatgaaccacgatttcatttttcgtccgataacggctgatgcgaag
ctgcgcatgaacccccggtcagatgtggacttctcctctcccaaggtggacctggtggtc
aacctaagagaggtggccgtggagctcaacagaccacagtacatcagcattctggagctc
ctggggtcagtggatatgatgtcacgcaacctgccctacaggaaataccggccgcaagtc
cacgtgcacaccaacgcctatctatggtggcagtatgtgatcacaggcatcatggaggtg
gacgtgaagccgcggctgcacatgtggtcatggcagcacatccgctgccaccggcagaca
gtcaagcagtacagagagctctacaaggccaagatcaccagcaagaagcccactgagaag
cagctcagggaattggaggagcctgagcggactctggatatttttaacatcactctggcc
aggcagcaagctgagatggaggcaagcaaagcgggtctgcgtatcttccgtccgggggtg
aaggtggaggaggaggaatctcagggctggttgggctggatgtggtccggctggtcagga
gacggtggcgccgaggccaaggaggtcaagaccggagcttttgacgagcttatgacttct
gctgagaaggccaaactctacaccgccatcggctacagtgagatagctgtcaatcataac
ctgccaaagaactttgaggatatgaagattaatttccacatggagaggatgtctgtctcg
atgaaagacaacaaggaccagaatgaaatcctcaaactcacagttgaagatctgaaatcc
atgctgacccagaggcccggagcacaagccattaagctgtcggcccagctcagtctgttt
gaggtgacaggactagccaataaccggccggcacccacattgctgtcgtcaaggaaggct
gccacggtaacggggacccccttgttggacatcctgtttgagaccaaccctctggacgag
agcgctgatcagcggctccgggtcgagtcccagcctctggagatcatatatgatgctgtg
acggtgaacagcatgtctacgttcttctcgccgcctgatgacctccagctggacgatctg
accaacgccactctcatgaagctggagcagttccgagaccgcacctccacaggactgatg
tacgtgattgagacccagaaggttctggatctgaacgtcaacctcatggcctcctacgtg
atcgttccccaaaccggtttctacgactccacccagaacctcatgctattggacctgggt
cacttcaaggtgtctagtctgagcagagaggggctgccgcagctctctgtagggagaagt
actatagaggacattatgtcccgggcctacgacagcttcgacgtccagctcagcagccta
cagttcctctacagcaaaccagatggagactggaagaaagcccgtaagctgaggcagtcg
gccctccacatcctggagcctgtcgacgtcaaggtggtgttcagcagagccatggtggtc
acagactcacgcatgcccaagtttaaaatctccggggagctgcccctcctgtctctgagg
atctctgatgataaggtacggggcgtgctggagctgatcgacagcatcccgctgccagag
agcaagccggccccgcgcaacaccaacgctcactcaacatccaaggctttaaagcagtcg
tacacccctcagctgacccccaggaaaccaaccatggctgaactgcgcaactccctcata
tgggaatcaggctcagaggaggacctgttctacgatgctcccagctctcctataggagac
cgtccgttcttccccgacaacatgcccagccccctgcagcgctccgactcggtcaagagg
agaggtctggtcaagaaagaccccaagaagaacatgaccgagttcctcatgacgtttgag
atcagcaaactgtccgttcagctgtgtcgtctgtctggaggcgaggaggtcacagtgttg
cacctggacatcgaggggctgggcaccgagctgaagctgcgtaccttcgacatgacatcc
tacacgttcctacgagagatctgcctggagtgccccgagtacatggattcagaggagaag
aaagtgcacctgatcaccactctagacaacacagaggaggacctcctcacattggagtac
actaaggctgataagaatgggccagaattcaagtctgagtacaagaacactgaacaatca
gttaaggtgaacttctcgtctctggacatacacctgcacacggaggctctgctcaatgcc
atgaacttcctgatcagtctcctccccccgaccaaggaggtggtgcccagccaggaggag
ctgcccaccatccccgaggaggacgagggagagggggaggaaggcgagaagaaagaggaa
tcggccgtggcaaaaaaaacttcttctaagaagtcaaagtttgaggatgtggtgaatttg
cacatcagagccgatctcaactgtctgaaggttttcatccgaggccagagccgcaggata
gcagagattcgcatcgagggcctggtgtcggaggtgctgatgaggaaaaaggcggtagag
gttctggccaacctgaagaacatagtcatcctggactgtgataaggaggctttgtacaag
cagtgtgtgtccatagccgatgaggaggtgtttgctttccgcatggtgaaccacacggaa
gccactgagggtgatgcctatctagacatgggtaaagtggacaccagcatcaccctgacg
gtgggctgcatccaggtcatcttcctcaacaagtttgtctcctccatcctggccttcatc
aacaacttccaggtggccaaggaggccctggctgaggtgactgtgcaggcagcggagaag
gcggccaccggggtgatggagctggctgagcgcagcacccgcatctccctggacgtggac
ttcaacgctcctgtcgtcttcctgccgcagtcgtcgtcctccgctaacgtcatcgtggcc
gacctcggtatggtcacggtcaagaaccgcttcgccatggtcccctcccagatgcacgtc
aagatccctcccgtcatggacaccatgaccgtgggcctcagcgacctcaagatgtacaga
accacctttgaagaggggaggtttcagggggaaatccagcttctgaagccggtcaacctg
gacctgtccatccagaggaacctgtcagcctcctggtaccacagcatccccgacatagag
atcactgctcacctcaaaccaatgaacctgatcctgggtcaggatgatatgacggtggtg
ttgaggactctgagtgggaacctgtcagagacgtcagacgctgcttccccccctcctcct
cctcctccgcgtacagtggaccgctccgacacggcctctaccaaaggctcacaggcatca
ggaggtactggtactaaccccaccagcggcaacacggtggtaacagctgcagtggtggag
acccagaagagcaccaagctgaagagcacactcaaacttgacttcaagtttgactccatg
accctggtcctgtacagccccaatgggactgaggtgcaggtgttggacttgagggatgag
cagctgaagctggctgagttcaccctggggactatctctacatctgtccacatgttctca
gacggatctatgaaggcctccgtcaaactcacagactgcctgctagacgacaaaagatgc
cgagtcaagaagatcactgccaggatgatggcgatgcgtccgggcgctgagaggaacgtg
atggtggaggtgaactacaagcagggccgcgatggcacctctttggacacggtggtgcag
gacgtgtacctctgtgccagcatggagttcctgctcactgtggccgacatcttcctcaaa
gccagccagcagggcttctcctccgccacccccaagaacagcagtagcactaaacccact
gcagccgcagcctccaaggaatctgctccggtggtggtggcaaagtccgagattaatgtt
ctggtgaagaaccccgagatcgtgtttgtggccgacctgacacgtgccgacgccccggcc
ctggtaatgaccacggagtgcgagctggtgatgaagagtgacccggacggtcagctgatg
acggcggtggtcaaggacctgaaggtggtggcctgccccttcctgaaggagaagaggaac
aaagagaccactgtgctgcagccctgccaagtgttcttcaagagcacacagtcctccacc
tccccgcaggccatggaggtctgcatcaacgcactcacactcaaggtgtcgcccatcatt
atcaacacagtgattaccattcagtcggtgctgagcccggccggtgccgagacaccccag
tctgagctggagagccccgtgcccccagacctgtgggagcgccggtcctggcgggacctc
aagctgtggttcctggaggaggagggtaaagacgaggatgcccagtccctggtcccgctg
attccccagggtgagtccctgcagttggccatcaactccatctgcctgaccctggaggca
ggggtgggccaccgcaccgtccccatgctcctagcaaagtcctccttccacggtgacgtc
aagaactggagcaccctcatcaacctgcacagccagctcaacctggaggttcactacttc
aacgaggtgatgggggtgtgggagccactgctggagcccctagaagacgagacccgagac
ggcttcagaccctggaccctgggattaaagatgaagaagaagccagtgaagtacacaggt
atatcggaagaagtggactacagcatccctgactacaagaccgtgatcagcatcagcagc
aaggatcaacttaacatcaccctctccaagtgtggactgggcatgctcagtaacctgggc
acggcctttgcggaggcggccaagcaggcatcggagagtttccagaaggacgaggctccg
ttcgtggtgaagaaccgtctaggtctgactgtgtcggtggtgcacagtgagctgttcagc
cccctgggccgtgaggtcaccgcgcgccgggtagagctgcagaacggagagagcctcaac
atggactaccgtcgcaccaccacccactcagaccagttctctgccatgacttcgttggtg
gccaaggactactacatacagcccactccggtgggccacacttcaacaggcatgattccg
ttgatcaaagtggggcgtggcatgtacagtgtcatgcacaaagactctggggtcacccgt
ttcctggtctgtcagatctactctgtggagggaagcaagtacatcaagatccgctctccc
ttccagatcataaaccacttctccatcccattcagagtgatggagggctccacctgtctt
gggatctcactgcctacagaggagttctgtgtgcctctggactcttacaggtcagagcta
agactgcagccggtaaccgagggagacgatcagtacgactgctccgagggtttcagctac
gagttggtgagccagcagcccggtgcacgtgtgcagcagacctgtcatcgccatggcgac
agcgctggcgtcctcatggtcaacatcgtccctctgaaagacacggtgacgtcacaacac
acgggaatggccggggagcactttgacgagccctacatcctgcacctgtggccctccgtc
ctgctccggaaccttctgccttaccccatcacctatcacctacaggacagtgaagagccc
acccccatcaccctgatggacggccactcggcccagctgcacaccgccatcatggaccag
tccagcctggaactccgcctcctcgactacctggggcaggattggcaggcccactacggt
ctccgtggcaacctggacgagatcaccttcattgtgttcagctccctgcgcgttgaagag
gaggtggtcaggttaggagaggggggagaagggaagagggcagagctggatattgcggtg
catgtgaagtacgacgcaggccagactgaggtggccatccattctccctactggatggtg
aacaagacgggccgcctgctgcaatacaaggccgacgacatccaccgcaaacacgccatg
gactacgacatgcctctgctcttctccttcaagccacacaactttctgcagaacaacaag
gtgcggctgatgatctcggacagtgacctgtcggatgatttctccctggataccgtgggt
agttatggtgaagtgaagtgcaaagggaggcttaaagattacgtgatcggagtgaagatc
gacgccagcagtttcagcctgacccgtatcgtaagctttgtgccgtattacctgttagtg
aacaggaccaaacatgtaatctgggtgggagaggagggccaggacgactggaccgaggcc
agaccacaacaggcagccatcccgttttggcccgagagggactccaagaagctcaaagtc
aaagtagaaggcagtcggtcaactcctcaaaccatggacttcaccaaaccggaaaactgc
ctgctgctgcacctggacaacactctgggcggggtcattgttgatgtgaacctatcagac
cactcgattatcatccgtttctctgactaccacgacggggccgcccccttcctcatcatc
aaccacacccaggagcagacagtggagttctaccagagatttcggagagattcatcagaa
tgggtggcagacgagctgctcggcctctccttctcagtagaggagacccagcccagtagt
cagaaggagaaggacaagctaagccccgggaaggcaatgtactacacctgggctgagccc
tctgggtcacgctccctggcctggcagtgtggcagctacagcggcgagctgaagagcgaa
gaggacctgcggttggacgtgaatgaggaggctaagctgtacctcatctcattctacgag
gggctccagcgggtggcgctgttcaccgaggacagacgcatctacaagctgctgtgtgag
agtgagaaggccgagctggccgaacaggagatcatcctgtccctgcaagacgtgggcgtc
tccctggtcaacaacagcaaccgccaggaggtgtccttcatcggtattaccagttcagac
gtggtgtgggagtccaagccaaagaagaagtctcgctggaaacccctgagtggaaaagat
gccgagctgctggagacccacttcaaggagtacacagagagtggaccagtggacaacgcc
atcttagacctggagaacaacttccaggtgtctctgacgcataatgggcaagacatgagg
atgatgcagccatatgatgctccaatcaggaggagcttcttgccaggggtgaaggtggag
tacagcgtatcggcccgccagagtgcctaccgtgtccagatcaaccgcatacagatccag
aatcagctacctggagcaatcttcccatatgtcttctaccctataaaactacccaagtct
gtcaccatggactcagagcccaaacctctgaccgacatcagcattgttaccagggcagcc
gggcactctgatatctcacgcatcaagtatttcaaggtgctaatccaggagatggatctg
aagttggacctgggcttcctctatgccgtcttggatctgttcactccggagaacgccagc
gtgatgacgtcagagcagcaggtggagttgtttgagaaggacatagagtatctgaagaca
gagctcaacgacgtctcagccactgacacgtcccctatcagtctctatgagtacttccac
atctctcctatcaagctgcacctgagtttctctctgagttctggaggagaggatggtaac
aaggagaagagggagaccgagatcatccctgtccagtccctcaatctgctgctgaaaagc
atcggagcaaccctcactgacgtgcaggatgtcgtcttcaaattggccttcttcgagctg
accttccagtttcgcactcgccagcaactacaatgggaggtcatcagacactactcgaaa
caggcgataaagcagatgtatgtgctggtgttgggcttggacgtgctgggaaaccccttt
ggcctgatccgaggtctgtcggagggagtggaggctttcttctacgagccctatcaggga
gctatccaggggccagaggagtttgtggagggtatggcgctgggggtgaaagcgctggtt
ggaggagcagtaggtggcattgcgggcgctgcctccaggatcacaggcgccatggcgaag
ggtgtggctgccatgacgatggacgaggagtaccagcagaagagacgggaggccatgaac
aagcagcctagcggtctgagagagggcctgacccgcggaggcaaaggactggtatctggc
tttgtcagtgggatcacagggattgtcaccaagcccattaaaggtgctcagaaggagggc
gcagcgggcttctttaagggtgtgggcaaggggctagtcggtgctgtggccagacccact
ggaggcatcatcgacatggccagcagcaccttccagggcatcaagagggcggctgagacg
tcccaagatgtggagagtctgcgtccgccacgcttcatccacgaggacggggtcatccga
ccatacaaggaaagagagggcatcggcagccagatgctacagaaaattgaaaatggaagg
ttcgccaagtacagatactttgcgcacgccaaagtgaacgagtccgatttcctgatgatc
accaaaaggggaatctttttcgtgaccaaaggtacatttgggcagctgacctgcgagtgg
cagtatctgttcgacgagttcaccaaggagcccatgatcgtggagggcaggcggcttcgg
atcgaggccaaggagagagtgaagtctgtgtttcatgccaaagagtttgggaagattata
aacttcagaagtccagaaatagccaagtgggttcttaccaagcttgaagacgccagggag
agtctacacaaatactga
DBGET
integrated database retrieval system
