Salmo trutta (river trout): 115199912
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Entry
115199912 CDS
T08542
Name
(RefSeq) voltage-dependent N-type calcium channel subunit alpha-1B-like
KO
K04849
voltage-dependent calcium channel N type alpha-1B
Organism
stru
Salmo trutta (river trout)
Pathway
stru04010
MAPK signaling pathway
stru04020
Calcium signaling pathway
Brite
KEGG Orthology (KO) [BR:
stru00001
]
09130 Environmental Information Processing
09132 Signal transduction
04010 MAPK signaling pathway
115199912
04020 Calcium signaling pathway
115199912
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
stru04040
]
115199912
Ion channels [BR:
stru04040
]
Voltage-gated cation channels
Calcium channel, voltage-gated (Cav)
115199912
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
Ion_trans
Ca_chan_IQ
GPHH
PKD_channel
Phage_TAC_15
Motif
Other DBs
NCBI-GeneID:
115199912
NCBI-ProteinID:
XP_029618313
Ensembl:
ENSSTUG00000018726
LinkDB
All DBs
Position
9:complement(12758624..12900490)
Genome browser
AA seq
2357 aa
AA seq
DB search
MTWTAATETSSNCIVLALEQHLPAGDKTPMSERLDDTEPYFIGIFCFEAGIKIIALGFAF
HKGSYLRNGWNVMDFVVVLTGMLATVGADFDLRTLRAVRVLRPLKLVSGIPSLQVVLKSI
MKAMVPLLQIGMLLFFAILMFAIIGLDFYMGKFHRTCFRTDTGEQAAEFPCGMEAPARTC
ENGTVCQEYWIGPNYGITNFDNILFAILTVFQCITMEGWVDILYNANDASGNTWNWLYFI
PLIIIGSFFMLNLVLGVLSGEFAKERERVEKRQEFLKLRRQQQIERELTGYLEWICKAEE
VMLAEEDKHAEEKSPLDGAWYKRKHNNPVLKRAKKSKNDLINAEEGEDHFTDISSVVPPG
SPFARASLKSSKNGSASYFRRKEKRLRFTIRHLVKAQSFYWTVLCLVGLNTLCVAIVHYD
QPEWLTYALYLAEFVFLGLFLTEMSMKMYGLGPMSYFHSSFNCFDFGVIIGSIFEVIWAV
VKPGASFGISVLRALRLLRIFKVTKYWNSLRNLVVSLLNSMKSIISLLFLLFLFIVVFAL
LGMQLFGGLFNFDEETPTTNFDTFPAAILTVFQILTGEDWNAVMYHGIESQGGVRRGMFS
SIYFIVLTLFGNYTLLNVFLAIAVDNLANAQELTKDEEEQEVAITKKMALQKAKEVKEVS
PMSAANISITALHSILYTGQHGAERAMPASFVKQSQGALSSSSSVCSVNSLKEQQKSLKM
MSVWEQRTTQLRRHNLRASSEALYSELDPEERLRMSSALHIRPDMKTHLDRPLVVEPHDG
PGPMGQHKPRTPEETDTPEDPAGPQPRRHHRHRDRERPIDEANENGDPGKEGRHHVHHSR
SKDPDGTRGKEGKSERSRSREGGRRHHHQTLVDEGGGGGTGEREHRHHHSHRQAREGNGT
VNSGGKGERRSRHKDGRSGERCSRGENGANGERRRHKTHGSRGQSTLEGEDHSEREKGRG
HRDRYVESEGDSLAISPQQDPGDQRWGTEGPEDSDNQRNVRRTGQTAVNIPPVTITPPPG
ETTLIPMNSIDCETMPMNEEKKTLEERTQSGPRPILPYSSMFVFGQANVVRRLCHYIVSL
RYFEMCILVVISMSSIALAAEDPVQANAPRNNVLKYLDYVFTGVFTFEMVIKMVDLGLLL
HPGSYFRDLWNILDFIVVSGALVAFAFSSFMGPPQGVPRGSKGKDISTIKSLRVLRVLRP
LKTIKRLPKLKAVFDCVVNSLKNVFNILIVYMLFMFIFAVIAVQLFKGKFFYCTDESKGL
EKDCRGNFLDYDKDEVAAQPRVWKKYEFHYDNVLWAFLTLFTVSTGEGWPDVLKHSVDAT
FEDQGPSPGYRIEISIFYVVYFVVFPFFFVNIFVALIIITFQEQGDKAMSECSLEKNERA
CIDFAINAKPLTRYMPENVQSFQYRMWKFVVSPPFEYSIMIMIALNTVVLMMKFHGAPDF
YEAMLKHFNIVFTALFSLECILKIIAFGPLNYLKDAWNVFDFVTVLGSITDIVVTEINTT
DRLLNLSFLRLFRAARLIKLLRQGYTIRILLWTFVQSFKALPYVCLLIAMLFFIYAIIGM
QVFGNIELNEDTAITHHNNFRTFLQALMLLFRSATGEAWHEIMLSCLSHRACDERSGNLG
KECGSDFAYFYFVSFIFLCSFLMLNLFVAVIMDNFEYLTRDSSILGPHHLDEFIRVWAEY
DPAACGRIRYNDMYNLLRIISPPLGLGKNCPNRVAYKRLVKMNMPIADDNTVHFTSTLMA
LIRTALEIKLSSGMVAQRLSDAELKKELSTVWPSLSQKTMDLLVTPHKPNELTVGKVYAA
LMIFDYYKQNRAKRLKEQQQQQQQQNAAGSQGKVGALFKPILPLTYNMEPPCELLPQPQP
QALPRPSPTLLNNMEPPCELLPQPQPQALPRPSPTLLNNMEPPCELLPQPQPQALPRPSS
TLLNNGGTLPGHDGTMKGSSTWVSEKSREVHRPRNKRPVQRGQSEDVPDTTLPQESVEMR
KMDTSDSTVPGPGSGLESQGRAVSMPRLNAELQRSQSRHSPGTLLAPVPDCSPMKRSAST
HAPQRPQEANLRDYTLETPSIQERPHHHHHHRCHHRRERDKKQRSLDRTPSTAGTPGDPA
AEPSSRDRVQDRGRSHERKHHSTAGEKQRYYSCDRYGSREHCHTTKSATASCATSPSEVQ
DPSINKQGSGSVKCSPVMMTSGASTPSRGRRQLPQTPLTPRPGVAYKTANSSPVHFVSAQ
CGSGLPTLSPGRLSRGLSEHNALLHSGSSHIPSPVTRISSEPFLGYSHREAQGQGSLYCS
LRDELLSPYAARARSPRTALPQMGPGPLHLPPPPQQSHAVPNGYHFTFGGIGNASPGSGS
GARAPRYYHEADEDEWC
NT seq
7074 nt
NT seq
+upstream
nt +downstream
nt
atgacatggacagcagcaactgagacatcatccaactgcatcgtccttgccttggagcag
cacctaccagccggcgacaagacccccatgtcagagcgcttggacgacacagagccctat
tttattggaatattttgttttgaagctggcattaagatcatcgcccttggctttgcgttt
cacaaaggctcctatcttcgaaatggctggaatgtaatggactttgtggtggtgctaaca
gggatgctggctacagtgggagcagactttgacttgagaactctgcgggcggtaagggtc
ctgaggccactgaaactggtgtctggaatccctagtcttcaggtggttctgaagtccatc
atgaaagccatggtgcctctgctgcagatcggtatgctgctcttctttgctatcctcatg
ttcgccatcatcggcctggacttttacatgggcaagttccaccggacctgcttcaggact
gatacaggtgagcaggcagcagagttcccctgtggtatggaggctccagcgaggacctgt
gagaatggcactgtgtgtcaggaatactggatcggccccaactacggcatcaccaacttc
gacaacatcctctttgctattctcaccgtcttccagtgcatcaccatggagggatgggtg
gacatcctctataacgccaacgatgcctcaggcaacacctggaactggctctacttcatc
cccctcatcatcatcggatccttcttcatgctcaacctggtcctgggagtcctgtctggg
gagtttgccaaggagcgtgagcgtgtggagaagaggcaggagtttctgaagcttcgcagg
cagcagcagatcgagagggagctgactggatacctggagtggatatgcaaggcagaggaa
gtgatgctggcggaggaggacaagcacgctgaagagaagtcccctctggatggagcgtgg
tacaaaaggaaacataacaacccagtgttgaagagagcaaagaagagcaagaatgacctg
atcaatgctgaggagggcgaggaccacttcactgacatctcatctgttgttcctccaggg
tctccgttcgcccgggccagcctgaagagcagcaagaatggcagtgcctcttacttccgg
aggaaagagaagcggctccgcttcaccatcagacacctggtcaaggctcagagcttctac
tggacagtgctgtgtctggtcggcctcaacacactctgtgtggccatcgtccattacgac
cagcctgagtggctcacatatgcactgtatttggcagagtttgtattcctgggcttgttt
ctgactgagatgtccatgaaaatgtatggactaggacccatgagctacttccattcctct
ttcaactgttttgattttggagtgattataggcagtatttttgaggtgatatgggcagtt
gtgaaacctggggcctccttcggcatcagcgtcctgagagctctccgtctgctcaggatt
ttcaaagtcactaagtactggaactctctgaggaacctggtggtctctctactcaactcc
atgaagtccatcatcagcctgctgttcctcctcttcctcttcatcgtggtgtttgcccta
ctgggcatgcagctctttgggggactgtttaattttgacgaggagacgccaacaacaaac
tttgacacctttccagcagcaattctcacagttttccagattctgacaggagaggactgg
aatgcagtgatgtatcatgggatagagtcccaggggggcgtgcgccggggaatgttctcc
tccatctacttcatcgttctcaccctgtttggaaactacactctcctcaatgtcttcttg
gccatcgctgttgacaaccttgcaaacgcacaggagctcactaaggatgaggaagagcag
gaggtggccatcaccaagaagatggccctccagaaggccaaggaggtcaaggaggtcagc
cccatgtcggccgcaaacatctccatcacagcgctacacagcatcctgtacacaggccaa
catggagcggagagggcaatgccagcaagttttgtaaagcaaagtcaaggtgcactctct
agcagctcgtccgtctgcagcgttaattcacttaaggagcagcagaagtctctgaagatg
atgtcagtgtgggagcagcgaaccactcagctgaggagacataacttgcgtgccagcagt
gaggccctgtacagcgagctggaccctgaggagaggcttcgtatgtcctccgccctgcac
atccgccctgacatgaagacccacctggaccggcccctggtggtggaaccccatgacggc
cccggccctatgggccaacacaagccccggacccctgaggagacagatacccctgaggac
ccggccggcccccagccacgcaggcaccaccgccaccgggacagggagagacccattgat
gaggccaatgagaatggcgatccaggcaaagagggtaggcaccatgtccaccacagtcgt
agcaaggacccagacggcacccggggcaaggaggggaagagtgagcggtcgcgcagccga
gaggggggcaggaggcaccaccaccagaccttagtggacgagggaggaggaggggggacg
ggggagagagagcaccgccaccaccactcccacagacaggccagagagggcaatggcact
gtcaacagtggaggcaagggcgagcgcaggtcacgccacaaagatggccgctcgggagag
aggtgctccaggggagagaacggagccaatggggagaggaggagacacaagacccacggc
tcaaggggtcagtccacactggagggagaggaccacagtgagagggagaaggggaggggc
cacagggacagatatgtggagtctgagggcgactccctggccatcagcccccagcaggac
cctggagatcagaggtggggcacagagggacctgaagactcagacaaccagaggaacgtt
agacggactggacagacggccgtcaacatcccccctgtcaccatcacccccccacccggg
gagaccacccttatacccatgaacagtatagactgtgagaccatgcctatgaacgaggag
aagaagaccctggaggagcggactcagagtggacccagacccatcctgccttacagctcc
atgtttgtgtttggccaggccaacgtggtgcggcgtctgtgtcattatattgtcagcctg
cggtactttgagatgtgtatcctggtagtgatatccatgagtagcattgcattggcagca
gaggaccctgtccaggccaacgctccgcgcaacaatgtgctcaagtatctggactacgtc
ttcacgggagttttcacatttgagatggtgattaagatggttgacctgggcctcctgctc
catcctggttcttacttcagagatctctggaacattctggacttcattgtggtcagtggc
gcactggtggcatttgcattttcgagcttcatgggaccgccgcaaggtgtgcccagaggg
tccaaaggaaaggacatcagcaccatcaagtctctcagagttctgagagtcttacggccc
ctcaagaccatcaaacgcttacccaagctgaaggctgtgtttgactgtgtggtcaactcc
ctgaagaacgtgttcaacatcctcatagtctacatgctcttcatgttcatcttcgctgtc
atcgccgtgcaattgttcaagggcaagttcttctactgcaccgatgagtccaagggtctg
gagaaagactgcagaggtaatttcctggactatgataaagatgaggtggcagcccagcct
cgggtgtggaagaagtatgagttccactatgacaacgtgctttgggccttcctcactctc
ttcactgtgtccaccggagagggctggcctgatgttctgaagcactctgtggatgctacc
tttgaggaccagggtcccagtccaggctaccgtatagagatctccatcttctacgtggtc
tactttgtggtcttccccttcttcttcgtcaacatctttgtggccttgatcatcattacg
ttccaggagcagggagacaaggccatgtcagagtgcagcctggagaaaaatgagagagcc
tgcattgactttgccatcaacgccaagccactgacgcgttacatgccagagaacgtgcag
tccttccagtaccggatgtggaagtttgtggtgtcacctccgtttgagtactccattatg
atcatgattgccctgaacaccgtggtgctcatgatgaagttccatggagctccagacttc
tacgaggccatgttgaagcacttcaacatcgtcttcactgccctcttctctctggaatgc
attctgaagatcattgccttcggtccgctgaattacctgaaggatgcctggaacgtgttt
gactttgtgacagtgctgggaagtataactgacattgtggtcacagaaatcaatacaacg
gaccggcttttgaatctgagttttctgaggctgttcagagcagctcgtctcatcaagctg
ctgaggcagggatacaccatccgtatcctgctgtggaccttcgtccagtccttcaaggcc
ctgccctatgtttgccttctgatagcgatgctgttcttcatctatgccatcattggtatg
caggtgtttggaaacattgagctcaacgaggacacagccatcactcaccacaacaacttc
cgcacctttcttcaggccctcatgctgctgttcaggagtgccacaggggaggcgtggcat
gagatcatgctgtcatgtttgagtcacagagcctgtgatgagaggtcaggcaacctgggg
aaggagtgtggcagtgacttcgcctacttctactttgtctctttcatcttcctctgctct
ttcctgatgctcaatctgtttgtggctgtcatcatggataactttgagtacctgactcga
gactcgtctatactggggcctcatcatctggatgagttcatccgtgtttgggctgagtac
gaccctgctgcctgcggacggattcgctataacgatatgtacaacttgttacgaattatc
tcgccccctcttggcttagggaagaactgccctaatagggtagcgtacaagcggctagtc
aagatgaacatgcccatcgctgatgacaacacagtccactttacctccactctcatggcc
ctgatccgcacggccctggagatcaaactgtcttcagggatggttgcccagcgtctttct
gatgctgaactgaagaaagagctctctacagtttggccaagcctttcacagaagactatg
gatctgttggttacaccacacaaacccaatgagcttactgttgggaaggtgtatgcagcc
ctgatgatctttgactactacaagcagaaccgagccaagaggctcaaggagcagcaacag
cagcaacagcaacagaatgctgccggctcccagggtaaggtgggggctctgtttaaacca
atactgcccctgacttacaacatggagcctccatgtgaactacttcctcagccccagcct
caggccctacctagacccagccccaccctgctcaacaacatggagcctccatgtgaacta
cttcctcagccacagcctcaggccctacctagacccagccccaccctgctcaacaacatg
gagcctccatgtgaactacttcctcagccccagcctcaggccctacctagacccagctcc
accctgctcaacaacggaggcacactgccaggccatgatggcactatgaaaggatcgtcc
acctgggtgtcagagaagtctagagaggtccacagacccaggaataagagacctgtccaa
aggggccagtctgaagatgtcccagacacaacccttccccaggagtcagtggagatgagg
aagatggacaccagtgacagcacagtgcctggtcctgggtctggactggagagccagggg
agggctgtgtccatgccccgcctcaacgcagagctgcagaggagccagtcacgccactcc
ccggggaccctgctggcccctgttcctgactgcagcccgatgaagcgctctgcgtccacc
cacgccccacagcgcccccaagaggccaacctgcgtgactacaccctggagacgcccagc
atccaggaaaggcctcaccaccaccaccaccaccgctgccaccaccgcagagagagggac
aagaagcagcggtcactcgacaggacgccaagcaccgctggtacaccaggagacccggct
gcagagccctcgtctagagacagggtgcaggaccgcggccgctcccatgagaggaagcac
cactcgacggcaggggagaagcagcggtactactcctgcgatcgctacggcagcagggaa
cactgccacaccaccaagtctgccactgccagctgtgccacctcccccagcgaggtgcag
gaccccagcatcaacaagcagggtagtggttcggttaaatgcagcccagtgatgatgacc
tcaggggctagcacacccagccgtggacgcaggcagctcccccagacccccctgaccccc
cgccccggggtggcctacaagactgccaactcctcccctgtgcactttgtgtctgcccag
tgtggcagtggcctgcccaccctgagtcctggccggctgagccgcgggctgtctgagcac
aacgccctgctgcacagtggctcctcccacatcccctcccccgtcacccgcatcagctcc
gagcccttcctgggctacagtcacagggaagcccagggccagggcagtctgtactgcagc
ctccgggacgagctgctgagcccctatgctgccagagcacgctcccctcggactgcactg
cctcagatggggccggggcccctccacctgcctccgccaccccagcagagccatgcggtg
cccaacggataccacttcacctttggtggtattggcaacgccagcccggggtctggctct
ggtgcccgggcacccaggtactaccacgaggcagatgaggatgaatggtgctag
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integrated database retrieval system
