Salmo trutta (river trout): 115200239
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Entry
115200239 CDS
T08542
Name
(RefSeq) THO complex subunit 5 homolog isoform X1
KO
K13174
THO complex subunit 5
Organism
stru
Salmo trutta (river trout)
Pathway
stru03013
Nucleocytoplasmic transport
stru03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
stru00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
115200239
09122 Translation
03013 Nucleocytoplasmic transport
115200239
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
stru03019
]
115200239
03041 Spliceosome [BR:
stru03041
]
115200239
Messenger RNA biogenesis [BR:
stru03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
TREX complex
115200239
Spliceosome [BR:
stru03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
115200239
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
FmiP_Thoc5
Motif
Other DBs
NCBI-GeneID:
115200239
NCBI-ProteinID:
XP_029618997
Ensembl:
ENSSTUG00000035177
LinkDB
All DBs
Position
9:23646615..23672024
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AA seq
683 aa
AA seq
DB search
MSDALKKRKSKVLRSEMGTPEVKRGRGEGDQDVRVYSEEVELDGRDPEEDYQQYKLTCEA
LAQLMNDIQELKANGAKDGCAEVEQKRMQSCIHFMSLKKLNRLAHMRLKRGRDQTHEGKQ
RVDVLHLQLQNLLYEVMHLQKEISKCLEFKSKHEEIDLVSVDEFYQEAPAEVSRTPLTKD
DTHQLTLARLDWELEQRKRLAEQYKESLSSKEKIQKGIEVKKEHLSSLQPGLNAIMQASL
PVQEYLSMPFEQTQRQTEIARHLPPSLYVLLVQASAYGQACDKSLSVSISGDVDEAKALS
KPPEDSQDDDSGDSDAEEEQEKTKRRRPTTGGQLDDKRREMLKRHPLSLCLDLRCKDGSV
LHLFFYYLMNLNIMTVKAKVSTATDLTGAISAGELLNSDTLLNCLYANDQGRETPNPSNR
YQFDKVGISSFGDYVAELGHPYLWVQSLGGLKFPSDAPEGLRAGSSLSASHMESTMKLLR
GRVQSRLALQKQFSSLEHSIVPVSSECQHLFPAKVLSRLARWTTITHQEYTNLVFTQHVS
EAGLARETDLFFMAVLERGTARLQAAVVLNPRYPVISPLFAVSLSWKGERSGRTDNNLRA
MESEVNVFKSELQGPRPGHQLLTNQVARLGVCLDVYLETDGQDDSVEGPREFPREKMCLR
TVRGPNRLKPFKYNHPQGFFSHR
NT seq
2052 nt
NT seq
+upstream
nt +downstream
nt
atgtctgacgccctgaagaagcgcaagtcgaaggtgctccgcagcgagatgggcacgccg
gaggtgaaacgtggccgcggagagggggaccaggatgtacgtgtgtacagtgaggaggtg
gagctggatggcagggacccagaggaggactaccagcaatataaactaacctgcgaagct
ctggcccaactgatgaacgatatccaggagctgaaagccaacggcgccaaggatgggtgt
gctgaggtagagcagaagaggatgcagagctgtatccactttatgagtctgaagaaactc
aaccgcctggctcacatgagactgaagagggggagagaccagacacacgagggcaagcag
agagtggatgtgttgcacctgcagctccagaacctgctctatgaggtcatgcacctgcag
aaggagatcagcaagtgtctggagttcaagtcaaagcatgaggagatagatcttgtgagt
gtagatgagttctaccaggaggcccccgctgaggtatcccgcacccccctcaccaaggac
gacacccaccaactcacgctggccaggctggactgggaactggagcagaggaagaggctg
gctgagcagtacaaggagtctctctccagtaaggagaagatccagaaaggcattgaggtg
aagaaggaacacctgagttctctacagcctggactcaacgctatcatgcaggcatccctc
ccagtccaggagtatctctccatgccgtttgaacagacccagagacagacagagatcgcc
cgccaccttcccccctctctctatgtcctactggtacaggccagtgcttacggacaggcc
tgcgataagagcctgagtgtgtccatcagtggagacgtggacgaggccaaagctctgtct
aaacctccagaggactcccaggatgatgattctggtgattctgatgcagaggaggagcag
gagaaaacgaagaggaggagacctactacaggtggtcagctggatgataagagacgtgag
atgctgaagagacaccctctctccctctgcctagacctcagatgcaaagacggcagtgtg
ctgcatctgttcttctactacctgatgaacctgaacatcatgactgtcaaggccaaagtc
tccaccgccacagatctcactggagctatcagcgccggggagctgttaaactctgacacg
ctgctcaactgcctgtatgccaacgaccaggggcgcgaaacgcccaacccctctaaccgt
taccagtttgataaagtggggatcagttcatttggagactacgtggcagaactgggtcat
ccctacttgtgggtgcagagtctgggaggactgaagttccccagtgatgcaccagagggt
ttgcgtgcaggcagttctctgagtgccagtcacatggaaagcaccatgaagctgctgaga
ggacgagtccagtcacgcctggccctgcaaaaacaattctcctcactagagcacagtatt
gttccagtgtccagtgagtgccagcacctgttccctgctaaggttctctcccgcctggct
cgctggactaccatcacacaccaggagtacacgaatctggtgttcacgcagcatgtgtca
gaagcaggtttggctcgggagactgacctgttcttcatggccgtgttggagagaggaaca
gctcgtcttcaggctgcggtggtgttgaatccccgttacccagtcatttctcctctcttt
gctgtctcactcagctggaagggggagcgcagtggacgtactgacaacaaccttcgagcc
atggagagtgaggtgaacgttttcaaatcagagctccaggggccccgcccaggccaccag
ctgctgaccaatcaggtagctcgtctgggtgtctgtctggatgtgtacctggagactgac
ggacaggacgacagcgtggagggaccacgggagttccccagagagaagatgtgtctacgc
actgtcaggggtccgaaccgtctgaagccgttcaagtacaaccacccccagggcttcttc
agtcaccgctga
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integrated database retrieval system
