Salmo trutta (river trout): 115200404
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Entry
115200404 CDS
T08542
Name
(RefSeq) protein patched homolog 1-like isoform X1
KO
K06225
patched 1
Organism
stru
Salmo trutta (river trout)
Pathway
stru04340
Hedgehog signaling pathway
Brite
KEGG Orthology (KO) [BR:
stru00001
]
09130 Environmental Information Processing
09132 Signal transduction
04340 Hedgehog signaling pathway
115200404
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sterol-sensing
Patched
DcrB
Motif
Other DBs
NCBI-GeneID:
115200404
NCBI-ProteinID:
XP_029619316
Ensembl:
ENSSTUG00000012394
LinkDB
All DBs
Position
9:31582462..31730505
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AA seq
1537 aa
AA seq
DB search
MASAANASSEQENRDPDRPRITRRNYRSTAPDLEYLQRPSYCDAAFALQQISEGNATGRK
APLWLRAKFQRLLFKLGCNIQKNCGKFLVVGLLVFGAFAVGLRAANLETDVEKLWVEVGG
RVNQELKYTRLKMGEEAMFSPQLMIQAPRQEGANVLTVEALQQHLDSAIRASQVHVYLFN
RQWKLQHLCYKSGEMDTEAHFVNQIIEKLHPCLIITPLDCFWEGAKLQSGRVYLPGISHP
RQWTNFDPKEFLRELRALKVQVDSWEVMLEKADVGHGYMDRPCLNPQDPDCPLTAPNKNT
TKPFDLARILTGGCHGLSRKYMHWQEELIVGGTTKNGTGPLLSAQALQTMFQLMTPKQMF
EHLKGYEEVSHINWNQDKAAAILEAWQRKYSEAVKQSVAANSSQKVLTFTTTTLEDILKS
FSDVSIIRVASGYLLMLAYACLTMLRWDCAKSQGAVGLAGVLLVALSVAAGLGLCSLLGI
SFNAATTQVLPFLALGVGVDDVFLLAHAFSETGQNKRIPFEDRTGECLKRTGASVALTSI
SNVTAFFMAALIPIPALRAFSLQAAVVVVFNFAMVLLIFPAILSMDLYRREDRRFDIFCC
FYSPCANRVIQIEPQVHVDGADSSRYSPPRPSYHTTPPTYCSSPPSYSGHGFSQQTQITM
QSTVQLRTEYDPRTQAFYTTAEPRSQISVQPFTPTPVATGPANNPNTSHASHASHASHGN
NNHHSNHLSQSGSSSGHVNLNNNNGSRGSGSVLSPPQSSSGVPTVSPQAGEGVCVSGESA
SSTRDLLSQFGGASLGLHSRWTLASFAEKHYAPFLLQPTTKVVVILLFLALLVVSLYGTT
RVRDGLELTDIVPRETSEYDFIGAQFKFFSFYNMYVVTQRAEYSQAQPLLYQLHHSFNTV
RYVLREDDGQLPRMWLHYFRDWLQALQEAFDQDWEAGWITQSSYRNGSDDGVLAYKLLVQ
TGRRERPISVNQLTRQRLVNADGIINPVAFYIYLTAWVSNDPVAYAASQANIRPHPPEWL
HDRTDSMLETRLSIPAAEPIEYAQFPFYLNGLRETPQFVEAIESVRAICSNYSHQGLPSY
PNGYPFLFWEQYVGLRHWLLLSISVVLACTFLVCALFLLNPWTAGIIVLVLSLMTVELFG
MMGLIGIKLSAVPVVILIASVGIGVEFTVHVALAFLTAIGDRNRRAVLALEHMFAPVLDG
AFSTLLGVLMLAGSEFDFIVRYFFAVLAILTILGVLNGLVLLPVLLSYFGPYPEVTPVDG
RSQLPTPSPESPPHVVHFSVHPCHTTSGTGTGTGSDSSDSEYSSNTTASGISQEPQQYNL
PTTRGRVGRAEEVRRGAVPRWTSRQGNATAHSLSSSVLPESDAHPGASRRFSKRDLQSLS
PAHPRMDAFETATEAGGHYGFGGHFVSGGNRERSARHRTRPSHKPRPNHHQPHHSNPAPT
YCQPITTVTASASVTIAVHSASPPTQSPTASYPGHTAADSYHTARGAEPEPAFQHPHVPL
EVHTGCRGTKMDTKVEAMELQDVECEAAESDCDKRAS
NT seq
4614 nt
NT seq
+upstream
nt +downstream
nt
atggcctcggctgctaatgcctcctctgagcaggaaaacagggaccccgatcggccgagg
ataacgcggaggaactatcgctcaacagcgcctgatttggagtatttgcagcggccaagt
tactgcgatgcagctttcgccttgcagcaaatatccgaggggaatgcgactggaagaaaa
gcaccgctgtggctgagagcgaagtttcagagactcttgtttaagttgggctgtaacata
caaaagaactgtggaaagtttttggttgtgggcctcttggtattcggagctttcgctgtt
ggtttacgggcagctaatctggaaaccgacgtggagaaactctgggtagaagtgggcggc
agggtgaatcaggagctgaaatacacacgtctgaagatgggcgaggaggccatgttcagt
ccccagctgatgattcaggcaccgcgccaggagggcgctaacgtgctcactgtggaggcg
ctacaacaacacctggactcagctatcagggccagccaagtgcacgtttacctctttaac
agacaatggaaattacaacatttatgctacaaatcaggagaaatggatactgaagctcat
tttgtgaaccagatcattgaaaagctccacccctgtctcatcatcactccgctggactgt
ttctgggagggagccaagctccagtctggaagggtctacctccctggcatatcacaccct
cgtcagtggaccaactttgaccccaaggagttcctgagagagcttcgggccctgaaggtc
caggtagacagctgggaggtgatgctggagaaggctgacgtgggacatggctacatggac
cggccctgtctcaacccccaagaccccgactgtcccctcactgcccccaacaagaacacc
accaagccctttgacttggctcgcatcctgactggcggctgccatggcctctccaggaag
tacatgcactggcaggaagagctgattgtaggggggaccaccaagaacggcaccggacca
ctactcagtgcccaggcattacagaccatgttccagctgatgacccctaagcagatgttt
gagcacctgaagggctatgaggaggtgtcccatatcaactggaaccaagacaaggccgca
gccatactggaggcctggcagaggaaatactcagaggcggtaaagcagagtgtagcagcc
aactcgtctcagaaagtgttgacgtttaccaccaccactctggaagacatcctcaagtct
ttctctgatgtcagcatcatacgagtggccagcggctacctgctcatgttggcctatgcg
tgtctgaccatgctacgctgggattgtgctaagtctcagggagctgtcggactggctggt
gtcctcttggtggcgctgtctgtggctgcaggcctggggctctgctctctcctgggcata
tctttcaatgctgccaccacacaggtgcttccgttcctggcactaggtgtaggtgtagat
gatgtgtttctcctggcccatgccttcagtgagacgggacagaacaagaggatcccattt
gaggaccgtacaggggagtgtttgaagaggacaggggctagtgtagctctcacctccatc
agtaacgtcactgctttcttcatggcagctctcatccctatacctgccctacgagccttc
tctctgcaggctgcagtggtggtcgtgtttaactttgccatggtgctgctcatcttccct
gccatcctcagtatggacctgtatcgcagagaggaccggcgttttgacattttctgctgc
ttctacagcccttgcgctaacagggtgatccagatcgagccccaggtccacgtggacgga
gcggacagcagtcgctacagcccccctcgcccctcctaccacaccacccctcccacatac
tgcagctcacccccgtcctacagcggccatggtttctcccagcagactcagatcaccatg
cagtctactgtccagctgaggacagagtacgaccccaggactcaggccttttacactacg
gccgaacccagatcccagatctccgtacaacccttcacaccgacgcctgtcgccaccggc
cccgccaacaaccccaacaccagtcatgctagtcacgctagtcacgccagtcacggaaac
aacaaccaccacagcaaccatctcagccagagtgggagtagcagtggtcacgtcaacctc
aacaacaacaacggtagccgtggttcaggctcggtcctttctcctccccagtcgtcctct
ggcgtccccactgtttccccccaagcgggggagggggtgtgtgtgtcgggggagagtgcc
agctccaccagggacctgctgtcccagtttggaggggcctctctggggctgcactcccgg
tggaccttggcctcctttgccgagaagcactacgcccccttcctactgcagcccaccacc
aaggtagtggtcatcctgttgttcctggccctgctggtggtcagtctgtacgggaccaca
cgggtacgggacgggctggagctgaccgacatcgttcccagggagaccagcgagtacgac
ttcatcggggcccagttcaagttcttctctttctacaacatgtacgtggtgacccagcga
gcggagtactcccaggcccagcccctgctctaccagctgcaccacagcttcaacactgtc
cgctatgtactgagagaggacgacggacagctaccacgcatgtggctccactacttcagg
gactggctgcaagctctgcaggaagcatttgaccaggactgggaagcaggttggatcaca
cagagcagctacaggaacggttcagacgacggggtcctggcctacaaactactggtacag
accggacgcagggaaaggcccatcagcgttaaccagctgactaggcagcgcttggtgaat
gcggatggcatcatcaacccggtggcattttacatctacctgactgcgtgggtcagcaac
gacccggtggcgtacgcagcctcacaggccaacatacggccacaccccccagagtggctc
cacgaccgcacagactccatgctcgagacacgcctcagcattcctgctgccgagcccatc
gagtacgcacagtttccattctacctcaacgggctccgcgagaccccccagtttgtggag
gccatcgagtcggtgcgagccatctgcagtaactacagccaccagggcctacccagctac
cccaacggctaccccttcctcttctgggagcagtacgtaggcctcagacactggctgctg
ctctccatcagcgtggtgctagcctgcaccttccttgtctgtgccctctttctgctcaac
ccctggactgccggcatcattgtgctggtcctgtctctgatgaccgtggagctgtttggt
atgatggggctgatagggatcaagctcagtgctgttcctgtggtcatcctcatcgcctct
gtcggcataggagtagagttcactgtacatgttgctctagcgttcctcacagcgataggg
gaccgtaacagacgggcagtgctggcgttagaacacatgtttgctcctgtgttggacgga
gccttctctactctactaggagtcctcatgctagcaggctctgagtttgacttcatcgtc
aggtatttctttgctgtgctggccatcctgaccattctgggggtgctgaatggtttggtc
cttctccctgtgttgctgtcttactttggcccctatccagaggtgactcctgttgatggg
cgtagccagttacccaccccgtcaccagagtcccctcctcacgtggtccacttctccgtc
cacccctgccacaccacctcagggacggggacaggtacaggctctgactcgtcagactct
gagtacagctccaacaccacggcatcaggcatcagccaggagccccagcagtacaacctc
cccaccactagaggcagagttgggagagcagaggaggtgcgacgaggagcagtgccaaga
tggacatctagacaaggaaacgccacagcccactctttgtcttcttcggtcctgccggag
tcggatgcccaccctggtgcatcccgtcgcttcagcaagagggacctacagtcgctgtcc
ccagcccacccgcgcatggacgcttttgaaactgctactgaggctggaggccattacggc
ttcgggggccattttgtctcgggaggcaaccgagaacgttctgcaaggcacagaactcgt
ccatcccacaaaccccggcccaatcaccaccaacctcaccactctaaccctgcccctact
tactgccagcccatcaccacagtaacggcctctgcatcggttaccatcgccgtccactct
gcctctccccccactcagagccccaccgcctcttacccaggacacactgcagcggacagt
taccacacagcaaggggcgcagagcctgagcctgccttccagcacccccatgtgccactg
gaggtccatacgggttgcagaggaaccaagatggacaccaaggtggaggccatggagctc
caggatgtggagtgtgaggcagctgagagcgactgtgataagagggcaagctga
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