Salmo trutta (river trout): 115200504
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Entry
115200504 CDS
T08542
Name
(RefSeq) replication factor C subunit 5 isoform X1
KO
K10756
replication factor C subunit 3/5
Organism
stru
Salmo trutta (river trout)
Pathway
stru03030
DNA replication
stru03410
Base excision repair
stru03420
Nucleotide excision repair
stru03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
stru00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
115200504
03410 Base excision repair
115200504
03420 Nucleotide excision repair
115200504
03430 Mismatch repair
115200504
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
stru03032
]
115200504
03036 Chromosome and associated proteins [BR:
stru03036
]
115200504
03400 DNA repair and recombination proteins [BR:
stru03400
]
115200504
DNA replication proteins [BR:
stru03032
]
Eukaryotic type
DNA Replication Elongation Factors
RFC (replication factor C)
115200504
DNA Replication Termination Factors
ELG1-RFC complex
115200504
Chromosome and associated proteins [BR:
stru03036
]
Eukaryotic type
Sister chromatid cohesion proteins
CTF18-RFC complex
115200504
DNA repair and recombination proteins [BR:
stru03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
RFC (replication factor C)
115200504
Check point factors
HRAD17(Rad24)-RFC complex
115200504
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Rep_fac_C
AAA
DNA_pol3_delta2
Rad17
RCF1-5-like_lid
AAA_11
AAA_lid_RFC1
AAA_14
AAA_22
RuvB_N
AAA_24
AAA_assoc_2
ResIII
AAA_16
nSTAND_NTPase5
DUF815
DEAD
AAA_5
ATPase_2
PhoH
AAA_7
AAA_30
TIP49
AAA_19
AAA_2
DNAX_ATPase_lid
Thioredoxin_6
Motif
Other DBs
NCBI-GeneID:
115200504
NCBI-ProteinID:
XP_029619486
LinkDB
All DBs
Position
9:37910632..37918845
Genome browser
AA seq
335 aa
AA seq
DB search
MASIGKIPLQSRNLPWVEKYRPQTLDDLISHKDILSTIQKFISEDRLPHLLFYGPPGTGK
TSTVLASAKQLYKEKEFNAMVLELNASDDRGIDVVRGPILSFASTRTIFKKGFKLVILDE
ADAMTRDAQNALRRVIEKYTENTRFCLICNYLSKIIPALQSRCTRFRFGPLSQDQMIPRL
EFVIQQESIDVTPDGMKAIVTLSSGDMRRSLNILQSTSMAYGKVTEDNVYTCTGHPLRSD
IANILDWSLNKDFTSAYNQILQLKTLKGLALHDILTEVHLLIHRVDFPPAIRMGLLIKLA
DIEYRLASGTSEKIQLSSMVAAFQAVRDIVVNEAA
NT seq
1008 nt
NT seq
+upstream
nt +downstream
nt
atggcatctattggcaagataccgttgcagtcaagaaatttgccgtgggttgagaaatac
aggccacagaccctagatgacttgatttctcacaaggacatattaagcaccatccagaaa
tttatcagtgaggacaggctgccacatctcttgttctatggacccccaggcacagggaaa
acgtctactgttctagcctctgccaagcagctctacaaggagaaggagttcaacgctatg
gtcctggagcttaatgcgtcagacgacagaggtatcgatgttgtacgaggacccatcctg
agttttgccagcaccaggaccatattcaagaagggtttcaagttggtgatactggatgag
gctgatgccatgacccgggatgcccagaatgctttgcggcgagtcattgagaagtacaca
gagaacaccaggttctgtttgatttgtaactacctgtctaagatcatcccagccctgcag
tctcgctgcaccaggttccgcttcggacccctgtctcaggaccagatgatacccaggctg
gagtttgttatccagcaggagagcattgatgtaactccagatggaatgaaagctattgtg
accctatcatcgggagacatgagaagatccctcaacatactgcagagcaccagcatggca
tatgggaaggtcaccgaggataatgtgtacacctgcactggtcacccactacgatccgat
atcgccaacatcctggactggtcgctaaacaaggacttcacctccgcttacaaccagatt
ctccagctgaagacgctgaaaggcctagccctgcatgacatcctgactgaggtccaccta
ctgatccacagagtggacttccctcctgccattcggatgggcttgcttatcaagttggca
gacattgagtaccggctggcctctggaactagtgagaagatccaattgagttcgatggtg
gcggctttccaggcagtgagagacattgtggtcaatgaggccgcctag
DBGET
integrated database retrieval system
