Salmo trutta (river trout): 115201056
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Entry
115201056 CDS
T08542
Name
(RefSeq) ATP-dependent RNA helicase DHX8 isoform X1
KO
K12818
ATP-dependent RNA helicase DHX8/PRP22 [EC:
5.6.2.6
]
Organism
stru
Salmo trutta (river trout)
Pathway
stru03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
stru00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
115201056
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
stru03041
]
115201056
Enzymes [BR:
stru01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
115201056
Spliceosome [BR:
stru03041
]
Complex C
Other components
Step II factors
115201056
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
S1
Helicase_C
HA2_N
DEAD
AAA_22
Flavi_DEAD
ABC_tran
AAA_19
nSTAND3
AAA_16
T2SSE
TsaE
PRP38_assoc
PhoH
AAA_30
Sigma54_activ_2
Motif
Other DBs
NCBI-GeneID:
115201056
NCBI-ProteinID:
XP_029620149
LinkDB
All DBs
Position
10:9177167..9206646
Genome browser
AA seq
1186 aa
AA seq
DB search
MADFGVEELKRLEYLSLVSKVCTELDNHLGICEKDLAEFVICLAEKQPTFDGFKSLLLKN
GADFTDSLISNLLRLIQTMRPSKASTSKASEPVVKQKSEKDKLKEMFPGLCRPDNPAPIP
LEDDDVRVADAAMKELEMFMPSVSGTNSTSRLDNKRQRSRSRSQDRDRKRRSRSPSCDRE
RNRDFKRGRKRVSRWSDRSPSPSRDRDIEVGSDRCKDKHVDRPPPEEPAVGDIFNGKVTS
ILQFGCFVQLEGLRKRWEGLVHISELRKEGRVANVADVVQKGQRVKIKVLSFTGSKTSLS
MKDVDQETGEDLNPNRRRNQGPDGGEEKIMRNPDRPTNLNLGHAPELEDDTLERKRLTKI
SDLEKWEINQMIAANVLSKEEFPDFDEETGILPKIDDEEDQDLEIELVEEEPPFLRGHTK
QSMDMSPVKIVKNPDGSLSQAAMMQSALAKERREVKQAQRMAEMDCIPIGLNKHWVDPLP
DFDGRQIAANMRGIGMMPDSVPEWKKHAFGGNQASYGKKTELSILEQRESLPIYKLKEQL
IQAVHDNQILIVVGETGSGKTTQITQYLAEAGYSARGKIGCTQPRRVAAMSVAKRVSEEY
GCCLGQEVGYTIRFEDCTSPETVIKYMTHGMLQRECLIDPDMGQYTLIMLDEAHERTIHT
DVLFGLLKKTVKKRPDMKLIVSSATLDAVKFSQYFFEAPIFTIPGRTFPVEVLYCKEPET
DYLDASLITVMQIHLTEPPGDVLVFLTGQEEIDTACEILYERMKSLGPEVPELIILPVYS
ALPSEMQTRIFDPAPPGSRKVIIATNIAETSLTINGIYYVVDPGFVKQNVYNSKTGVDQL
VVTPISQAQAKQRSGRAGRTGPGKCYRLFTERAYRDEMLTSNVPEIQRTNLASTMLSLKA
MGINDLLSFDFMDAPPMETMITAMEMLYTLGALDDEGLLTRLGRRMAEFPLEPMLCKMLI
MSVHLGCSEEMLTIVSMLSVQNVFYRPKDKQQMADQKKAKFHQAEGDHLTLLAVYNSWKN
NKFSNPWCFENFIQARSLRRAQDIRKQMLGIMDRHKLDMVSCGKATVRIQKAICSGFFRN
AAKKDPQEGYRTLIDQQVVYIHPSSSLFNRQPEWLVYHELVLTTKEYMREVTTIDPRWLV
EFSPAFFKVADPTRLSKQKKMQRLEPLYNRYEEPNAWRISRAFRRK
NT seq
3561 nt
NT seq
+upstream
nt +downstream
nt
atggcagactttggagttgaggagcttaagcggcttgaatacctgtctttggtgtccaaa
gtgtgtacagaacttgacaaccatcttggtatttgcgagaaagatcttgctgagtttgtc
atctgccttgctgaaaagcaaccaacatttgatggcttcaaatcacttctgctgaaaaat
ggagcagacttcacagattctctcatcagcaatttgctcagacttattcaaactatgcgg
ccgtcaaaagcatctacgagcaaagcctctgagcctgtggtcaaacagaagagtgagaag
gacaaactgaaggagatgtttcctggattgtgcaggccagacaatccagctcccattccg
ctagaagacgatgatgtgagggtagcagatgccgccatgaaagaattggagatgttcatg
cccagtgtcagtggaacaaactcaacgagcaggttggacaacaaaaggcagcgaagcaga
agtcggagccaagacagagacaggaagagacgctcacgctctccgtcttgcgaccgtgag
aggaacagagacttcaaacgcggtcgaaaacgtgtttcccgctggagtgatcgcagtccg
agcccctccagggatcgagacattgaggttggttctgaccgctgtaaggacaaacacgtg
gaccggcctccaccagaagagcctgctgtaggggacatattcaatggcaaagtcaccagc
atcctgcagtttggctgcttcgtgcaactggagggactgaggaaacgctgggaggggttg
gtccacatctctgagctacgcaaagagggacgtgttgccaatgtggctgatgtggtccag
aaaggtcaacgagtcaagatcaaggtgctgtccttcactggctccaagaccagtctcagc
atgaaggatgtagaccaggaaacgggggaggacctgaaccccaacaggaggaggaaccag
ggccctgatggtggggaggagaaaatcatgaggaaccccgaccgcccaaccaacctcaac
ctgggtcacgcccctgagttggaggatgacacactggagcgcaagagactgaccaagata
tcagaccttgagaagtgggagatcaaccagatgattgctgctaatgttctttctaaagag
gagttccctgactttgacgaggagacgggtatcctcccaaaaattgatgatgaagaagat
caggacctggagattgagctggtggaggaggagcctccgttcctgagaggacacactaaa
cagagtatggacatgagccctgtcaagattgttaagaatccagatggctcgctgtcccag
gctgccatgatgcagagtgctttggctaaggagaggagggaggtgaagcaggctcagcga
atggctgagatggactgcatacctattggcctcaacaagcactgggtagaccccctgcct
gactttgatggaaggcagattgcagccaacatgagaggaatcggcatgatgccagacagc
gtcccggagtggaagaaacatgcctttgggggcaaccaggcctcttatggcaagaagaca
gagctttccatcctggagcagagagagagcctgcccatctacaagctcaaagagcagctc
atacaggctgtccatgataatcagatcctgattgtggttggagagaccggctctgggaaa
accacccagatcacccagtacctggccgaggcgggctactccgctcgggggaagatcggc
tgcactcagccccgtcgtgtggcagccatgtccgtggccaagagagtctctgaagagtat
ggttgctgtctgggccaggaggtgggctacaccatccgttttgaggactgcaccagccct
gagacggtgatcaagtacatgacacatggtatgctgcagagggaatgtctgatagatcca
gacatgggtcagtacaccctcatcatgcttgacgaggcccacgagaggaccatccatact
gatgtgctctttggtctactcaagaagacagtgaagaaacgcccagacatgaagctgatt
gtgtcctcagcgacactagatgccgtcaagttctcccagtacttcttcgaggcgcccatc
tttaccatcccaggacgcactttcccagtggaggtgctctactgcaaagagcctgagacg
gactacctggacgccagtctcatcaccgtcatgcagatccacctgaccgagcctccaggt
gatgtcctggtgtttctgacaggtcaggaggagattgacacagcttgtgagatcttgtat
gaaaggatgaagtctctgggacccgaagtgcctgaactcatcattctaccggtctactcc
gcgctgccaagtgagatgcagacccgtatctttgaccctgctccccccggcagcaggaag
gtaatcattgccactaacattgctgagacgtctctgactattaatgggatctactatgtg
gtggacccaggctttgtgaagcagaatgtctacaattccaagactggcgtcgaccaatta
gtggtgacccccatatcacaggcccaagccaagcagcgttctggtagggctggaagaact
ggccctgggaaatgctaccggctatttacagagagagcctacagagacgagatgctcacc
agcaatgtgcctgaaatccagagaacaaacctggccagtaccatgctgtctctcaaggcc
atgggcatcaatgacctgctatcgtttgatttcatggacgctccacccatggagacaatg
atcacagccatggagatgctctacactttaggggctctggatgatgaggggttactcact
cgccttggacgcaggatggctgagttccctctggagcccatgctgtgtaagatgctgatc
atgtccgtccacctgggctgtagtgaggagatgctcaccatcgtctccatgctgtctgtg
cagaacgtcttctacaggcccaaggacaagcagcagatggctgaccagaagaaggccaaa
ttccaccaggccgagggagaccaccttactctgttggctgtctataactcctggaagaac
aacaagttctccaacccttggtgcttcgagaacttcatccaggctcgttccttgcgcaga
gcccaggatattcgcaaacagatgctgggtatcatggacaggcataagctggacatggtg
tcttgtggaaaggccacagtgcgcatacagaaggccatctgcagtggtttcttcaggaac
gcagccaaaaaggatccccaggagggctaccgtaccctcattgaccagcaggtggtgtac
atccacccgtccagttccctgttcaaccgccagcctgagtggttggtgtaccatgagttg
gtgctgactactaaggagtacatgagggaggtgaccaccattgacccacgctggctggta
gagttctcgccggcctttttcaaagtggccgatcccacacgcctcagcaaacagaagaag
atgcagcgccttgagcccctctacaaccgttacgaagagcccaacgcttggagaatctcc
cgcgcctttcgcaggaagtag
DBGET
integrated database retrieval system
