Salmo trutta (river trout): 115201104
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Entry
115201104 CDS
T08542
Name
(RefSeq) transcription factor Sox-9-A-like
KO
K18435
transcription factor SOX9 (SOX group E)
Organism
stru
Salmo trutta (river trout)
Brite
KEGG Orthology (KO) [BR:
stru00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
stru03000
]
115201104
Transcription factors [BR:
stru03000
]
Eukaryotic type
beta-Scaffold factors with minor groove contacts
HMG SOX
115201104
SSDB
Ortholog
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GFIT
Motif
Pfam:
HMG_box
Sox_N
HMG_box_2
HMG_WDHD1
Motif
Other DBs
NCBI-GeneID:
115201104
NCBI-ProteinID:
XP_029620251
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All DBs
Position
10:complement(11260409..11264376)
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AA seq
491 aa
AA seq
DB search
MNLLDPFLKMTDEQDKCLSDAPSPSMSEDSAGSPCPSGSGSDTENTRPSENGLLMGPDGP
LVEFKKDDDDKFPVCIRDAVSQVLKGYDWTLVPMPVRVNGSSKNKPHVKRPMNAFMVWAQ
AARRKLADQYPHLHNAELSKTLGKLWRLLNEGEKRPFVEEAERLRVQHKKDHPDYKYQPR
RRKSMKNGQSESEDGSEQTHISPGAIFKALQQADSPASSIGEVHSPGEHSGQSQGPPTPP
TTPKTDIQAGKVDLKREGRPLQEGTGRQLNIDFRDVDIGELSSDVISHIDTFDVNEFDQY
LPPNGHPGAPGTAAGQVSYNGTYGISSSAVSQAAGGTAGHSWMTKSQSQQQHSLTTLGSG
GEQGQNQRTPTHIKTEQLSPSHYNDQQNSSPPQHVTYGSFNLQHYSSSSYPSITRAQYDF
SDHQGGTNSYYSHAAGGQGSGLYSFSSYMSPSQRPMYTPIADTTGVPSVPQTHSPQQHWD
QQPVYTQLSRP
NT seq
1476 nt
NT seq
+upstream
nt +downstream
nt
atgaatctactcgaccccttcctgaaaatgacagacgaacaagacaaatgtctctctgac
gcaccgagcccgagcatgtccgaggactctgcgggatccccgtgcccttccggctctggc
tcagacacggagaacaccagaccttcagagaacggtctgctgatgggtccggacggtccc
ctcgtcgagttcaagaaggacgacgatgacaagttccccgtgtgcatccgcgacgcggtg
tcccaggtcctgaaaggctacgactggaccttggttccaatgccagtccgagtgaacgga
tctagtaagaacaagccccacgtcaagagaccgatgaacgcgtttatggtttgggcgcaa
gccgctcggagaaaactggctgatcagtaccctcatctgcataacgcggagctgagcaaa
actctggggaaactatggaggctactcaatgagggagagaagcgtccgttcgtggaggag
gcagagcgcttgagggtacagcacaagaaagaccaccccgactacaagtaccagccccgg
cgaaggaagtccatgaagaacggacaaagcgaatctgaggacggcagcgagcagacgcac
atatcgccaggagcgatcttcaaggcgctccagcaagctgactctccagcctctagcata
ggagaagtgcactcccccggagaacactcaggccagtcccaagggccccccacccctccc
accacacctaagaccgacatccaagcgggcaaggtggacctgaagcgtgagggtcgcccc
ttacaggaaggcacgggccgtcagctcaacattgacttccgggatgtggacatcggcgag
ctgagcagcgacgtcatctcccacatcgataccttcgacgtcaacgagttcgaccagtac
ctgccccccaacggtcacccaggtgctcctggcactgccgctggccaggtctcctacaac
ggtacctatggcatcagcagctccgcagtcagccaggcagcagggggcaccgcagggcac
agctggatgaccaagagccagagtcagcagcagcactccctgaccacgctgggtagcgga
ggggagcagggccagaaccagaggacccccacacacatcaagacagagcagctgagcccc
agccactacaacgatcagcagaactcctcccccccgcagcacgtcacctacggctccttc
aacctgcaacactacagctcgtcctcctacccctccatcacccgcgcccagtatgacttt
tctgaccaccagggcggcaccaactcctactacagccacgcagctgggggccagggctca
gggctgtactccttcagcagctacatgagccccagccagaggcccatgtacacccccatc
gcagacacaaccggggtgccctccgtaccccagacccacagtccccagcaacactgggac
cagcagccagtgtacacacagctttcccggccctga
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