Salmo trutta (river trout): 115201875
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Entry
115201875 CDS
T08542
Name
(RefSeq) probable ATP-dependent RNA helicase DDX5 isoform X1
KO
K12823
ATP-dependent RNA helicase DDX5/DBP2 [EC:
5.6.2.7
]
Organism
stru
Salmo trutta (river trout)
Pathway
stru03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
stru00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
115201875
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
stru03041
]
115201875
03009 Ribosome biogenesis [BR:
stru03009
]
115201875
Enzymes [BR:
stru01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
115201875
Spliceosome [BR:
stru03041
]
Complex A
U1 snRNP components
U1 related factors
115201875
Complex B
115201875
Ribosome biogenesis [BR:
stru03009
]
Eukaryotic type
Pre-60S particles
Helicases
115201875
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Helicase_C_2
ERCC3_RAD25_C
Cas3-like_C_2
Motif
Other DBs
NCBI-GeneID:
115201875
NCBI-ProteinID:
XP_029621619
Ensembl:
ENSSTUG00000016824
UniProt:
A0A673YYZ3
LinkDB
All DBs
Position
1:56560115..56565571
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AA seq
614 aa
AA seq
DB search
MPGFSDRDRGRDRGYGSGPPRFGGGGRGGGGGKFGNPGDRLRKKHWNLDELSKFEKNFYQ
EHPDVTRRSPQEVAQYRSTKAVTVKGRDCPNPIMKFHEASFPTYVMDVINKAGWSEPTPI
QAQGWPLALSGKDMVGIAQTGSGKTLSYLLPAIVHINHQPFLERGDGPICLVLAPTRELA
QQVQQVAAEYGRASRLKSVCVYGGAPKGPQLRDLDRGVEICIATPGRLIDFLEAGKTNMR
RCTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMWSATWPKEVRQLAEDFLKDYVQI
NVGALQLSANHNILQIVDVCNDGEKEDKLLRLLEEIMSEKENKTIIFTETKRRCDEITRR
MRRDGWPAMGIHGDKSQQERDWVLNEFKFGKAPILIATDVASRGLDVEDVKFVINFDYPN
NSEDYIHRIGRTARSQKTGTAYTFFTPNNMRQASDLVAVLREANQAINPKLLQMADRGGH
SRGGRGGSGFRDDRRDRYSSGGRRDFTSFRDRENDRGFDSGPKKVFGTNSQSGGYGASGF
DKSGNGFGGYGSNGQSNYGTSQAGAFPTQNFQAPQFSANQGGAQNGMSHQQFPFTQQQAP
QPMVPYPMPPQFPQ
NT seq
1845 nt
NT seq
+upstream
nt +downstream
nt
atgcctggattttccgacagagatcgtggtagagatagaggttatggcagcggaccacct
cgttttggaggcggtggaagaggtggtggtggggggaagtttggtaatcccggtgataga
ctgcgcaagaagcactggaaccttgacgaactctccaaatttgaaaagaacttttaccaa
gagcaccccgatgtcactcggagatctccgcaagaggttgcacagtacagaagtactaaa
gctgttactgtgaagggaagggactgccctaatccaattatgaagttccatgaagccagt
tttccaacctatgtgatggatgtcattaacaaagcaggctggtcagaaccaacaccaatc
caagcacagggttggccactggcattgagtggcaaggacatggttggcattgcacagaca
ggctctgggaaaactctctcatacttgttgcctgcaatcgtgcacattaaccaccagcct
ttcctggaacgtggagatggccctatttgcttggtgcttgccccaacccgtgagctggct
cagcaggtccagcaggtggcggcagagtatggcagagcttctcgcctgaagtctgtctgc
gtttatgggggcgcgcccaaagggccacagctccgtgacctggatagaggtgtggagatt
tgcatagccacacctggcaggcttattgacttcctggaggcgggaaagaccaacatgcgc
agatgcacttacctggtcctggatgaggctgaccgaatgctcgacatgggtttcgaacca
caaatccgaaaaattgtggaccaaatcagacctgaccgacagacgctgatgtggagtgcc
acctggcccaaagaggtacgccagctggcagaggacttcctaaaggactatgtccagatt
aatgtgggagctctgcagctgagtgccaaccacaacatcttgcagatcgtggatgtttgc
aatgatggcgagaaggaagacaaactcctccgcctacttgaggagatcatgagtgagaag
gagaacaagaccattatctttacagagaccaagaggagatgtgacgagatcactaggagg
atgaggcgggatggttggccagcaatgggcatccatggagacaagagccagcaggagagg
gactgggtgctcaatgagttcaagttcggaaaggctccaattctcattgccacagacgtc
gcttccaggggtctagatgttgaagatgtgaaatttgtcatcaactttgactaccccaac
aactctgaggactatattcaccgcatcggcagaactgcccggagccaaaagactggcaca
gcctacaccttcttcacccccaacaacatgaggcaggccagcgacctcgttgctgtgctc
cgtgaggccaaccaggccatcaaccctaaactcctccagatggcggacagaggaggtcat
tcaaggggaggcagaggtggtagtggatttagggatgaccgccgggacaggtactcctcc
gggggcaggcgtgacttcactagctttagggacagggaaaacgatagaggttttgacagt
ggaccaaagaaggtctttggcacaaattcacagagtggaggctatggggcaagtggcttt
gacaaaagcggcaatggttttggcggctatggcagcaacggccagtcaaactatggtacc
agccaggccggggcattcccaacgcagaacttccaggccccacagtttagtgccaaccag
ggaggggcacagaatggcatgagccatcaacagttccccttcacacagcaacaagcacca
cagcccatggtgccttacccaatgccccctcaattcccacagtaa
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