Salmo trutta (river trout): 115202049
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Entry
115202049 CDS
T08542
Name
(RefSeq) pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15-like
KO
K12820
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15/PRP43 [EC:
5.6.2.6
]
Organism
stru
Salmo trutta (river trout)
Pathway
stru03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
stru00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
115202049
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
stru03041
]
115202049
03009 Ribosome biogenesis [BR:
stru03009
]
115202049
Enzymes [BR:
stru01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
115202049
Spliceosome [BR:
stru03041
]
Complex A
U2 snRNP components
U2 related factors
115202049
Complex B
115202049
Complex C
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-SnRNP related factors
115202049
Ribosome biogenesis [BR:
stru03009
]
Eukaryotic type
90S particles
Helicases
115202049
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
Helicase_C
HA2_N
DEAD
AAA_22
AAA_19
AAA_25
nSTAND3
SRP54
Flavi_DEAD
AAA_29
Motif
Other DBs
NCBI-GeneID:
115202049
NCBI-ProteinID:
XP_029621762
Ensembl:
ENSSTUG00000034651
LinkDB
All DBs
Position
11:233817..258291
Genome browser
AA seq
759 aa
AA seq
DB search
MSKRHRLDLGDDYSNKKRSDGKDRDRDRDRDERSKDRDRDRDRDRDRDRDVKPSVVPPNT
MMAGGGMLPLKQTAMQQQINPFTNLPHTPRYYEILKKRLQLPVWEYKERFNDILARHQSF
VLVGETGSGKTTQIPQWCVDMVKGLGGPKKAVACTQPRRVAAMSVAQRVADEMDVMLGQE
VGYSIRFEDCSSAKTILKYMTDGMLLREAMNDPLLERYGVIILDEAHERTLATDILMGVL
KEVVRQRSDLKVIVMSATLDAGKFQVYFDSCPLLTIPGRTHPVEIFYTPEPERDYLEAAI
RTVVQIHMCEEEEGDCLLFLTGQEEIDEACKRIKREIDDLGPEVGDIKVIPLYSTLPPQQ
QQRIFEAAPPRKPSGAIGRKVVVSTNIAETSLTIDGVVFVIDPGFAKQKVYNPRIRVESL
LVTAISKASAQQRAGRAGRTRPGKTFRLYTEKAYKTEMQDNTYPEILRSNLGSVVLQLKK
LGIDDLVHFDFMDPPAPETLMRALELLNYLAALNDDGDLTELGSMMAEFPLDPQLAKMVI
ASCEFNCSNEILSITAMLSVPQCFVRPTEAKKAADESKMRFAHIDGDHLTLLNVYHAFKQ
NHESTQWCYDNFVNYRSLMSADNVRSQLSRIMDRFNLPRRSTEFTSRDYYINIRRALVTG
FFMQVAHLERTGHYLTVKDNQVVQLHPSTVLDHKPEWVLYNEFVLTTKNYIRTCSDIKPE
WLVKVAPQYYEMGNFPQCEAKRQLERIVAKLQTKEYSQY
NT seq
2280 nt
NT seq
+upstream
nt +downstream
nt
atgtctaaaagacaccgtttagatttaggcgatgactactcaaataaaaagagatctgat
gggaaagacagagatcgcgacagggaccgtgacgagcgctctaaagacagggaccgcgac
agagatcgggaccgggaccgagatagagatgtaaagccctctgtcgtgccccccaacacc
atgatggccgggggaggcatgctgcctctcaagcagacagccatgcagcagcagatcaac
ccgttcacaaacctgccccacacgccgcgctactatgagatcctgaagaagaggctgcag
ctgcctgtgtgggagtataaggagcgcttcaacgacatcctggcacgccaccagagcttc
gtgcttgtcggagagacgggctccgggaaaaccacacagatcccccagtggtgtgtggac
atggtgaagggcttgggcggccccaagaaggcagtggcctgtacccagcccaggagggtg
gcagccatgagcgtggcccagagggtggccgacgagatggacgtcatgctgggccaagag
gtgggctactccatacgattcgaggactgcagctccgccaagaccatactgaagtatatg
acagacggtatgttgcttcgggaagccatgaacgaccccctgctggagcggtacggcgtg
atcatcctggatgaggcccatgagagaacgctggcaacggacatcctaatgggagtcttg
aaggaggtggtccgacagaggtcagacctcaaggtgattgtgatgagcgctacgttagac
gccgggaagttccaagtgtactttgacagctgtccactgctgaccattcccggacgcaca
caccccgtggagatcttctacacccctgagccggagcgggactacctggaagccgccatc
cgcacggtcgttcagatccacatgtgtgaggaagaggagggggactgtctgttgttcctc
accggacaagaggaaattgacgaggcctgtaaacggatcaaacgggagattgacgacttg
ggacctgaagtcggagacatcaaagtcattccactatattccacactgcctccccagcag
caacaaagaatctttgaggccgcaccccccaggaagcccagcggtgcgataggaagaaag
gttgtggtttccacaaacattgctgagacatcccttaccatcgacggagtggtgtttgtg
atcgatcctggttttgccaagcaaaaggtgtacaaccctcgtatcagggtggagtctctc
ctggtcacggcgatcagcaaagcctcggcgcagcagagggcgggccgcgctggcaggaca
cggccagggaagactttccgcctctacactgagaaagcctacaagaccgagatgcaggac
aacacgtatcccgagattctccggtccaacttgggttctgtcgtgttgcagttgaagaag
ctgggtatcgatgacctggtgcactttgacttcatggacccaccagccccggagaccctg
atgcgggcgctggagctgctcaactacctggcggcgctcaacgacgacggcgacctgaca
gagctgggctccatgatggcagagttcccgttggacccccagctggccaagatggtgatc
gccagctgcgagttcaactgctccaacgagatcctctccatcaccgccatgctgtcagtc
ccgcagtgtttcgtccgccccaccgaggctaagaaggcggcggacgagtccaagatgcgg
ttcgcccacatcgacggagaccacctgacgctcctcaacgtctaccacgccttcaaacaa
aaccacgagtctacacagtggtgctacgacaactttgtgaactaccgttcgctgatgtcg
gccgacaacgtgcgctcgcagctgtcccggatcatggaccgcttcaacctgccccggcgc
agcaccgaattcaccagcagagactactacatcaacatccgccgagcgctcgtcacaggc
tttttcatgcaggtggctcatttggagcgcacgggccattacctcacagtcaaggacaac
caggtggtccagctacacccgtctactgtcctggaccacaagccagagtgggtgctctac
aatgagtttgtcctcaccactaagaactacattcgcacctgctcggatattaaaccggaa
tggctggtgaaggttgctcctcagtactacgaaatgggcaacttcccacagtgtgaagct
aagaggcagttggagcgaattgttgccaaactccagacaaaggagtattcccagtactga
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