Salmo trutta (river trout): 115202155
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Entry
115202155 CDS
T08542
Name
(RefSeq) THO complex subunit 4-like
KO
K12881
THO complex subunit 4
Organism
stru
Salmo trutta (river trout)
Pathway
stru03013
Nucleocytoplasmic transport
stru03015
mRNA surveillance pathway
stru03040
Spliceosome
stru05168
Herpes simplex virus 1 infection
Brite
KEGG Orthology (KO) [BR:
stru00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
115202155
09122 Translation
03013 Nucleocytoplasmic transport
115202155
03015 mRNA surveillance pathway
115202155
09160 Human Diseases
09172 Infectious disease: viral
05168 Herpes simplex virus 1 infection
115202155
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
stru03019
]
115202155
03041 Spliceosome [BR:
stru03041
]
115202155
Messenger RNA biogenesis [BR:
stru03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
115202155
TREX complex
115202155
Spliceosome [BR:
stru03041
]
Complex C
Other components
EJC/TREX
115202155
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
115202155
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RRM_1
FoP_duplication
F07F6_N
Motif
Other DBs
NCBI-GeneID:
115202155
NCBI-ProteinID:
XP_029621950
UniProt:
A0A673Z6N2
LinkDB
All DBs
Position
1:57133606..57137044
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AA seq
266 aa
AA seq
DB search
MADKMDMSLDDIIKQNRQQRGGAGGRGGGRGRGRGGSGGGRGGVGRGATGGGFGGRGGGS
GPMRNRPNLSRGRARPTPYSRPKQLPDKWQHDMYGNHGFNASVGGGGGGAGVETGGKLLV
SNLDFGVSDADIQELFAEFGTLKKAAVHYDRSGRSLGTADVHFERKADALKAMKQYNGVP
LDGRPMNIQLVTSQIDTQRRPPMQGMIRGGGMNRGRGGGFRGMQRGRGAGRGGGRGRGGR
GGSTKPLSAEELDAQLDAYNARMETS
NT seq
801 nt
NT seq
+upstream
nt +downstream
nt
atggccgataagatggatatgtctctagacgacatcatcaagcagaacaggcagcagaga
gggggcgcaggaggccgtggtggtggaagaggccgtggccggggaggctctggcgggggc
cgaggtggtgttggccgtggagcaactggtggcggctttggtggccgaggtggaggatcg
ggccccatgaggaaccgaccgaacctgagccgtggcagagcaagacctacgccatacagc
aggcccaagcagcttcctgataaatggcaacacgacatgtacggcaatcatggcttcaat
gccagtgttgggggcggcgggggtggtgctggtgtggaaaccggagggaaacttcttgtc
tccaatctcgactttggcgtttcagacgcagatattcaggagctctttgcggagtttggt
acactgaagaaggcagctgttcactatgaccggtcgggcaggagcttaggcactgcagat
gtccactttgagaggaaggccgatgctctaaaagctatgaaacagtacaacggtgtacca
cttgatgggcgtcccatgaacatacaactcgtcacatcacagatcgacacacaaagacga
ccacccatgcagggtatgatccgaggtggtggcatgaacaggggtcgtggcggtgggttt
agagggatgcagagaggacgtggagcaggtcgtggaggaggcaggggccgaggtggccgc
gggggaagcactaagccactttccgccgaagagttggatgcccagctagatgcctacaat
gccaggatggaaacaagctaa
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