KEGG   Salmo trutta (river trout): 115202167
Entry
115202167         CDS       T08542                                 
Name
(RefSeq) pre-mRNA-processing factor 19 isoform X1
  KO
K10599  pre-mRNA-processing factor 19 [EC:2.3.2.27]
Organism
stru  Salmo trutta (river trout)
Pathway
stru03040  Spliceosome
stru04120  Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:stru00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    115202167
  09123 Folding, sorting and degradation
   04120 Ubiquitin mediated proteolysis
    115202167
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:stru03041]
    115202167
   04121 Ubiquitin system [BR:stru04121]
    115202167
   03400 DNA repair and recombination proteins [BR:stru03400]
    115202167
Enzymes [BR:stru01000]
 2. Transferases
  2.3  Acyltransferases
   2.3.2  Aminoacyltransferases
    2.3.2.27  RING-type E3 ubiquitin transferase
     115202167
Spliceosome [BR:stru03041]
 Complex B
  Other components
   Prp19 complex
    115202167
 Complex C
   Prp19-CDC5 complex
    115202167
Ubiquitin system [BR:stru04121]
 Ubiquitin ligases (E3)
  U-box type E3
   115202167
DNA repair and recombination proteins [BR:stru03400]
 Eukaryotic type
  Other factors with a suspected DNA repair function
   PSO4 complex
    115202167
SSDB
Motif
Pfam: WD40_Prp19 WD40 WD40_WDHD1_1st WD40_CDC20-Fz Prp19 Beta-prop_EML_2 WDR55 WD40_MABP1-WDR62_2nd Beta-prop_WDR90_POC16_2nd Beta-prop_CAF1B_HIR1 Beta-prop_TEP1_2nd EIF3I Beta-prop_EML Beta-prop_WDR75_1st ANAPC4_WD40 WD40_MABP1-WDR62_1st Beta-prop_IFT140_1st Beta-prop_SCAP NBCH_WD40 Beta-prop_EIPR1 Beta-prop_TEP1_C Beta-prop_IFT122_1st U-box WDR90_beta-prop_4th Beta-prop_WDR19_1st Beta-prop_SPT8 Beta-prop_Vps41 Beta-prop_RIG_2nd PEP5_VPS11_N Beta-prop_DCAF4 Beta-prop_HPS5 WD40_RFWD3 Beta-prop_WDR35_TULP_N Beta-prop_Nup120_160 Beta-prop_DCAF12 PROPPIN Cytochrom_D1 B-prop_COPA_B_2nd Nucleoporin_N Peripla_BP_2 zf-Nse Cep57_MT_bd ATG16
Other DBs
NCBI-GeneID: 115202167
NCBI-ProteinID: XP_029621962
Ensembl: ENSSTUG00000037537
LinkDB
Position
11:complement(6620508..6634046)
AA seq 505 aa
MSLVCAISNEVPEHPCVSPVSNQVFERRLIEKYIAENGTDPMNRQPLSEEQLIDIKVSHP
IRPKAPSSTSIPAILKALQDEWDAVMLHSFTLRQQLQTTRQELSHALYQHDAACRVIARL
TKEVTAAREALATLKPQAGLVVAQAVASQPSVTAGGAGEPMDVSEQVGMMPEIIQKLQDK
ATVLTTERKKRGKTVPEELVRTEDLSKYRQVATHAGLHSASVPGILSLDLCPSDTNKVLT
GGADKNVVVFDKKEEQIIATLKGHTKKVTSVIYHPSQSVVFSASPDSTIRVWSITGGNCV
QVVRAHEASVTGLSLHATGDYLLSSSEDQYWAFSDIQTGRVLTKVTDEATGCALTCAQFH
PDGLIFGTGTADSQIKIWDLKERTNVANFPGHIGPVTSIAFSENGYYLATGAQDSSVKLW
DLRKLKNFKTITLDNNYEVKSLVFDQSGTYLAVGGTDIRVYICKQWSEVLNFTEHTGVVT
GVAFGEHAQFLTSTGMDRSLKFYSL
NT seq 1518 nt   +upstreamnt  +downstreamnt
atgtccctggtttgtgcaatctcgaatgaggtgccggagcacccctgcgtgtcgccggtg
tccaaccaggtgttcgagcggcggctgattgagaagtacatcgccgagaatggaaccgac
cctatgaataggcagcctctgtccgaggagcagctgatagacattaaagtctctcacccc
atcagacccaaagctccctcatccactagtatcccagccatcctcaaagctctgcaggac
gagtgggatgcggtgatgctccacagtttcaccttgaggcagcagttacagacgacacgt
caggagttaagccacgccctctaccagcacgacgccgcctgcagggtcatcgcccgtctc
accaaggaggtcactgccgccagagaggctctggccactctgaagccacaggcgggattg
gtggtggctcaggcagtcgcttcccagccctctgtcacggctggaggtgcaggagagccc
atggacgtcagtgagcaggtgggaatgatgccagagatcatacagaagctgcaagacaag
gccactgtcctgaccacggagagaaagaagagaggaaagacggttccagaagagctggtc
cgaacggaggacctcagcaagtacagacaagtggctacccatgctggtctccacagtgcc
agtgtgcctgggatcctgtctctggacctgtgtccctccgacaccaacaaagtgctcact
ggcggggctgataagaacgtggtggtgtttgataagaaggaggagcagatcatcgccacc
ctgaaaggacacaccaagaaggtcacctctgtcatctaccacccctctcagtcggtagtg
ttctcggcctctccagacagcactatccgtgtgtggtccattactgggggcaactgtgtc
caggtggtgcgggctcacgaggcgagcgtcaccgggctctccctccacgccaccggagac
tacctgctcagctcctccgaggatcagtactgggccttctctgacatccaaacaggtcgt
gttctcaccaaagtcactgatgaggctacaggatgtgctctgacctgtgctcagttccac
cctgacggtctgatcttcgggacggggacggccgactctcagatcaagatctgggacctg
aaggagcgcaccaacgtagccaacttccctggccacatcggccccgtcacctccatcgcc
ttctctgagaacggatactacctggctacaggtgcccaggacagctcagtgaagctctgg
gatctgaggaagctgaaaaacttcaaaaccatcaccctggacaacaactatgaggtgaag
tccctggtgtttgaccagagtgggacgtacctggctgtgggtggcactgacatcagggtc
tacatctgtaagcagtggtccgaggtcctcaacttcacagaacacactggggtggtgact
ggcgtggcgttcggggagcacgcccagttcctcacctccaccggaatggacaggagcctc
aagttctacagcctgtaa

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