Salmo trutta (river trout): 115202941
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Entry
115202941 CDS
T08542
Name
(RefSeq) LOW QUALITY PROTEIN: neural-cadherin-like
KO
K27892
neural-cadherin
Organism
stru
Salmo trutta (river trout)
Brite
KEGG Orthology (KO) [BR:
stru00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
stru04515
]
115202941
Cell adhesion molecules [BR:
stru04515
]
Cadherins
Cadherin related
115202941
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Cadherin
Laminin_G_2
Laminin_G_1
Ig_Shg
Cadherin_CELSR2_9th
CADH_Y-type_LIR
Cadherin_pro
EGF
Cadherin_2
RET_CLD1
hEGF
EGF_Hmr-1
Laminin_G_3
cEGF
Big_9
Motif
Other DBs
NCBI-GeneID:
115202941
NCBI-ProteinID:
XP_029622998
LinkDB
All DBs
Position
12:complement(13023988..13226329)
Genome browser
AA seq
2839 aa
AA seq
DB search
MHLKLLGDGSKDFNVFAHHKRGHILLKTSIVLDREERSEYLLSLGLCCQSCAATDLVVAE
VASVKVDVLDTNDHEPTFPNADIKIHLEDSTALRSVVYKVTAEDTDHGKNAELIYFALPK
NCSFYVVPKTGDVLLVDSILGLTAPIKFNVFAMDHGWPSRTSQSIEIEIHPRQWPAVPPP
SQGEPKIRLPRKSRSLLESDEPVVIHVSEDASIGSVVVNLYPVRFQAASFELMDPGADSS
PVTVSRDSGDIVITRRLDRETDPLVEITVKVQDKRGPDWYLVRVELTVTDVNDNVPEWTM
VPSPYLAVVSPNALAGSLVYKLHAQDGDEGNNGEVEYFLSDGGDGRFEVDRKSGHVRTTG
LPLQRDKEYLLTVVAADRLGSRSPPVVVSVIAGARAPQFSNASFTISLPENTPERQPFLA
TPAVSFQKQPISYSLVINPSSLFSMQADTGEITLTRTIDFEMDQHSFLLMVRASEDQDSL
SSAAEVRVIITDENDCVPEFLQSIYSKDSVPETVTTATSLLQVSASDCDSDLNAELTYYT
LSPDFSISPHGTIFPAGQLDYERPNHLYEFVVMAVDKGDVPRTGTATVRIRMANVNDEVP
EFSQHVYRTFVSEDAGPNTLVATVLAKDPDGDGITYKITTGNDEGNFVIDSQKGLIRLRS
SPPPRLQGVEYILNVTATDDNASGGPQALSSTAQVIVGVDDVNNNKPVFGKCQQYRERTT
VLENQPAGTFVLQVHAVDADEGSNGRVTYGFMHKDSTVPAFSVHPDTGVIVTSRKFDRER
QREYAVTVTATDQAADPLIGICQLNILILDENDNSPKFENLRYEYFLREDTMIGTSFLRV
AAHDDDYSTNAAVTYSMSKEQPEYLRVNPLTGWVYVNQPISQRTYITREIVATDGGNRSS
SVELSVTITNVKNQPPQWDRDSFDVVIPENTVRDTPIVTIKATSPLGDPRVTYNLEDGMV
PETNMPVRFYLTPNREDGSASILVAEPLDYETTRNFILRVRAQNVAAVPLAAFTTVYLNI
TDVNDNVPFFTSSIYEASVTEGAEVGTFVTQVSSNDLDLGLNGKISYSLLNDRSGDYQYF
RIDPELGSIYTEAVFDRETKGSYLLEVKSVDGWESARPGKHGQPNSDTAYVRVFISDVND
NKPVFAQRCMKSTWYEDADLGFAILTVSANDEDDGANAKLRYQITSGNTGGVFDVEPEVG
TIFIAQPLDYEQNKGYKLLVLASDGKWEDYADVMVNVVNKNDEAPVFTVNEYYGSVTEEL
DGSPVFVLQVTATDPDKDADQEALRYSLHGQGAESEFIIDEVTGXIYAQRTLNREERAVW
RFVVLATDEGGEGLTGFTDIIINVWDINDNAPIFTCAPDCHGNVPENSXPGTSVMEMTAT
DLDDSAVGQNAVLSYRIVGNTGTGGGGGSDMFSINPSTGTISVAMSGLDREQAETYLLMV
EARDGGGMTGTGTATIRVTDVNDHAPRFTERSCLTRVPESSEPNAVVLELSAEDWDTGEN
AQLTFSVVAGDPEQKFFMVSHRQEQRGTLRLKKRLDYERPSEQRFNLTLKVEDLDFSSFI
HCVVEVEDCNDHAPIFIALSQPLAPLPEDVPVGSSVARLTASDSDSGQNKEITYRILQES
DPLGQFSVDQTGLVTVTSALDRETAAQHNLVILASDHGSPALTGSATIQLALLDVNDNGP
EFEAAYAPVVWENVAGPQLVRLNQTSTLLRAVDRDSAENGSPFYFSFPLELHHSNDFYLQ
DNGNGTATITALRAFDRERQKEFHLQIIMSDSGHPPKTVTNTLTITIGDENDHAHQAEKE
IFVNSHRGRMPTTVLGKVYAPDPDDWDNKTYAFEGQVPNHFILNKRTGFLIIKENAPPGS
YEFQVCVSDGVWPDAVSGVTVYVRELRDEAIYNSGSLRLADVTAKEFIEQRGSVKSRYEL
LVDFLSEMLAVGVDDINVFGLMDIRERTLDVRFAVHSSPFLRAEKLQGYLAAHKQKLQSF
LQVNVSQVHVDECANTDCGGSGGCSNVLSVSDTPTVVDSGSMSLVSVTVESTAVCSCSGR
EHVHKICSSYPRNPCFNGGICVDTQSGYRCQCPAQFEGPECQQTKHSFHGNGYAWFPPIR
PCFESRLSLEFITEVADGLLLYSGPLAQLQPWDLEDFMAIELIDGTPTLKINHGSGTLVL
QLPGNVNVADRRWHRLDVRSNSKEVRFTLDRCAGATVMEMEGVGSWLTTEDHSSCEVTGV
TPNLDRHLNGTQVLQLGGVNENLPYVYPQLQHKHFTGCIRNLIVDSKFYDLGTPADFVGS
SPGCLTTDGSCVNGGIPSCGPRGRCHGEWGSFSCQCIPGYTGNQCEQEVPEYSFDGRSYV
HYQLASPLPARRTQVQVLVRTRKHGSAILSLLSKEQTEYLQIEIYQGLLAVFYNLGDGDY
NLTLPSYRLDNGEWHEVYLDRLDNELTLRVDGGGGRRETSAAPSRSREIITDPAVVMLGN
AFPSGSNKSFQGCMRDLRLNGRYVPLDGQSRDGVSVVSSQGLSVGCSSDSCKRNQCSPPF
TCVDLWRVHECRCPPGHMVKLNGTGRFCIYTLCARRPCHRGTCVAQSPSKFTCHCPEGYR
GRHCEVALAIYQDDVGLSFSSLFAICICFMALIVLLLGIFLYTRWRSYKGLKEGVYHVSA
HHDGWEDIRENVLNYDEEGGGEEDQNAYDMAELQKSLQPSPAQSVQYSRSRAIHQHHHPH
TQHQHPQPQDTLSRLSASTAPSSFTTTLRRDVPPTRTPAQGQSRPLLLARKSLSFSSQDL
ARYLCEIIRDADQAPESAPFDSLQVFSTEGGGSLAGSLSSFSSAGLEEDTARGQDSLKDW
GPRFEKLKALYEKTEASDL
NT seq
8520 nt
NT seq
+upstream
nt +downstream
nt
atgcatctgaaactcttgggagacggaagtaaagatttcaatgtatttgcccaccacaaa
cgcggacacatacttctgaaaacctcgatcgtcctggacagagaggagcgctccgagtac
ctgctcagcctgggtctgtgctgccaaagctgcgccgccactgaccttgtagtcgcagaa
gttgcatctgtgaaagtggacgttttggacactaatgaccacgagccaacattccctaat
gctgatataaaaatccatctggaagactccactgctctgcggtctgtggtgtacaaagtg
accgcggaggatacagaccacgggaaaaacgctgaactcatttactttgctcttcccaaa
aattgcagtttctacgtcgttccaaaaactggagatgtactgctggtggactctatattg
ggtcttaccgccccaataaagtttaacgtgtttgcgatggaccacggctggccctcacgg
accagtcagagtattgaaatagagattcatccccggcaatggccagcggttccaccgcca
tcccagggcgaaccgaaaatcagactacctcggaagtcgaggtccctgctagagtcggac
gaaccggttgtaatacatgtttccgaggatgccagtatcggttctgttgtagtaaacttg
tacccggtgaggtttcaggctgccagctttgagttgatggatcccggtgcggacagctcg
ccggtcacggtgagtcgggacagcggagatatagtaattacacggcgcctggaccgggag
acggatcctctcgtggagattactgtgaaagttcaggataaaagaggtccagactggtac
ctggtacgggtggagctgacagtgactgatgtgaatgacaatgttccggaatggaccatg
gtcccctccccctacctggcagtggtatctcccaacgccctggccgggtcactagtctac
aagctccacgcccaggacggagacgagggcaacaacggggaggtggagtacttcctgtct
gatggtggtgacgggcgtttcgaggtggacagaaagagtggtcatgtccggaccacgggg
ctgccacttcagagggacaaagagtacctgttgacagtggtggctgctgaccggctgggt
agccgtagtcccccggtggtagtgtcagttatagcaggagccagagcaccacagttctcc
aacgcatccttcactatttcactacctgagaacacaccagagagacagcccttcctggca
actccagccgtgtccttccagaagcagccaatcagctacagcctggtcatcaatccaagc
agtctgtttagcatgcaggcggacacgggggagatcactctgaccaggaccatagacttt
gagatggaccagcacagcttcctgctcatggtcagggccagcgaggaccaggacagtctg
agcagtgctgctgaggtgcgtgtgatcatcacagatgaaaatgactgcgttcctgagttc
ctgcagtccatttacagcaaagacagtgtgccggagactgtaaccacggcaacctctctg
ttacaagtgtctgccagtgactgtgactcggacctgaacgctgagttgacctactacact
ctgagcccagacttcagcatctctccccacggaaccattttccctgcagggcaactggac
tatgagaggcccaaccacctgtatgagtttgtggtgatggctgtggacaagggagatgtg
ccccggacaggtacagccactgtacgcatccgcatggccaatgtcaacgatgaggtcccc
gagttctcccagcatgtctaccggacattcgtctcggaggacgctggacctaacacactg
gttgccacggtgcttgccaaggaccccgacggtgatggaatcacctacaaaatcacaacg
ggcaacgacgaaggcaactttgttatcgacagccagaaaggtctgatccggctgcgctcc
agcccacctcccagactccagggggtagagtacatcctgaacgtcacagcgaccgatgac
aacgcctctggtggcccccaggccctctcgtccaccgctcaggtcatcgtcggcgtggac
gatgtcaacaacaacaagcctgtctttgggaagtgccagcagtaccgggagcggaccacg
gtgctggagaaccagcctgcgggaacgttcgtcctccaggtccacgccgtggatgcagac
gagggctctaatgggagagtcacctatggattcatgcacaaagacagcactgtgcctgcc
ttcagtgtccacccagacacaggtgtgatagtgacgtccaggaagtttgaccgcgagcgt
cagcgggagtacgcggtgacggtgaccgccacagaccaggcagcagaccccctcataggg
atctgtcaactcaacatcctcattctcgacgagaacgacaacagccccaagtttgagaac
ctacgctacgagtacttcctacgggaggacacaatgattggcaccagtttcctgcgtgtt
gcggcccacgacgatgactacagcaccaatgctgccgtcacctactccatgtcaaaagaa
cagccagagtacctgagggtaaaccccctaaccggctgggtctacgtcaaccagcccatc
tcacagaggacctacatcacccgggaaatagttgccacggacggggggaaccggagcagt
tcggtggagctgtccgtcaccatcaccaacgtgaagaaccagcctccgcagtgggacagg
gacagctttgacgtggtcatcccggagaataccgtcagggacacacccatagtgactatc
aaggccacctctccgctgggggaccctagagtgacctataacctggaggatgggatggtg
ccggagaccaacatgcctgtacgcttctatctgacccctaaccgtgaggacggctctgcc
tccatcctggtggctgagccgctggactacgagaccaccaggaacttcatactgagggtc
cgggctcagaatgtggctgcagtcccccttgcagccttcactactgtctatcttaatatc
acagatgtgaacgacaatgttcccttcttcacctcgtccatctacgaggcgtcggtcaca
gagggggcggaggtggggacgtttgtcacacaggtgtcatccaacgacctggacctggga
ctcaacggaaagatctcctactccctgctaaacgaccgcagtggggactaccagtacttc
cggattgatcctgagctgggctccatctacacagaggccgtgttcgaccgtgagaccaaa
ggctcctacctgctggaggtcaagtcggtggacggctgggagtcagcccgacctgggaaa
catggacagcccaactcagacacggcgtacgtgagggttttcatcagcgatgtgaacgat
aacaagcctgtctttgctcagcggtgtatgaagtcgacgtggtatgaggatgcagacttg
ggctttgccatcctcactgtcagtgctaatgacgaggatgacggcgccaacgctaagcta
cgctaccagatcacgtctggcaacactggcggggtgtttgacgtggaaccagaagtgggc
accatcttcatcgcccagcctctggactacgagcagaacaagggctacaagctgctggtg
ctggcgtcggacgggaagtgggaggactacgcggatgtgatggtcaacgtggtgaacaag
aacgacgaggcgccagtgttcacggtcaacgagtactacggttctgtgactgaagagctg
gatggatcgcctgtgtttgtgcttcaggtaactgctactgacccagataaggatgctgac
caggaggccctacggtactccctccatggccagggagccgagagtgagttcattattgat
gaggtgacggganagatctacgctcagaggactctgaaccgggaggagcgggccgtgtgg
aggtttgtggtccttgccacagatgagggcggcgagggtctgaccggattcactgacatc
atcatcaacgtgtgggacatcaacgacaacgcacccatcttcacctgcgcccccgattgt
catggcaacgtgccggagaactctngccccggcacctctgtcatggagatgacggccacc
gacctggatgactcggccgtgggccagaacgctgtgctgtcctacaggattgtgggtaat
acgggtacaggtggcggcggcggctctgacatgttcagcattaacccgtccacgggcacc
atctcggtggcaatgagtggcctggaccgggagcaggcagagacctacctgctgatggtg
gaggccagggacgggggtggcatgacgggcacgggtaccgccaccatcagggtgacagat
gtgaatgaccacgcacccaggttcacggagcgatcctgcctgaccagggttcctgagagc
agtgagcccaacgcagtggtactggaactgtctgctgaggactgggacacaggcgagaat
gcccagctcaccttcagtgtggtggcaggagacccagagcagaagttttttatggtgagc
caccggcaggagcagcgtggcaccctgagactgaagaagaggctggactacgagaggccc
agtgagcagcgcttcaacctcaccctgaaggtcgaagatctggacttctccagctttatc
cactgtgtcgtagaggtagaggactgtaacgaccacgcacccatcttcatcgcgctttcc
cagccgctggcgcccctgcccgaggacgtgcccgtgggcagcagcgtggccaggcttact
gccagcgactctgactcaggccaaaacaaggagatcacctacagaatcctccaggagtca
gaccctctgggccagttctctgtagaccagactggtctagtcactgtgaccagcgctctg
gacagagagacagcagcacaacacaacctggtcatcctggcttctgaccacggctctccg
gccttgacgggcagcgccaccattcagctggccctgctggacgtcaacgacaacgggccg
gagtttgaggcagcgtacgccccagtggtgtgggagaacgtcgctggtccccagctggtc
agactcaaccagacctccacgctgctgcgggctgtagaccgagactcagcggagaacgga
tctccattctacttcagctttcccttagagctacaccacagcaacgacttctacctgcag
gataacggaaacggcacggccaccatcacagccctgagggccttcgaccgggagaggcag
aaagagttccacctgcagatcatcatgagtgacagcggccatccgcccaagacggtcacc
aacactctgaccatcaccataggagacgagaacgaccatgctcaccaggcggagaaggag
atttttgtcaacagtcacagagggaggatgccgaccactgtcctggggaaggtctacgcc
ccggatcctgatgattgggacaacaagacatatgcctttgagggacaagtgcccaatcac
ttcatcctgaacaagaggacgggattcctgatcattaaggagaacgctcccccgggcagc
tacgagtttcaggtgtgcgtctcagacggcgtgtggccagacgctgtctccggggtaaca
gtgtatgtgagggagctgcgggacgaggccatctacaattctggatccctgcgcctggca
gacgtcacagcgaaggaatttattgagcagcgtggcagcgtgaagagtcgctatgaactg
ctggtggacttcctgtcagagatgttggcggtgggcgttgatgacatcaacgtcttcggc
ctgatggacatcagggagaggacactggacgtgcgcttcgcggttcacagcagtcccttc
ctcagagcagagaaactacagggatacctcgctgctcacaaacaaaagctgcagtcgttc
ctgcaagtgaacgtcagccaggtacacgtggatgagtgtgccaacacagactgtggcggc
agcggcggctgctccaatgtgctgagcgtcagtgacacgcccaccgtggtggattctggg
agcatgtcactggtgtcggtgacggtggagtccacggcagtatgcagctgctccggtaga
gaacacgtccacaagatctgttcctcctatcccagaaacccctgcttcaacgggggcatc
tgtgtcgacactcagagcgggtacagatgccagtgccctgcgcagttcgaggggccagag
tgccagcagaccaaacacagtttccatggcaacggctatgcctggtttcctcccataagg
ccttgcttcgagagccgtctctccctggagttcatcacggaggttgcagatggtctgctg
ctctacagcgggcccctggcccagctacagccctgggaccttgaggacttcatggccata
gagctgatcgatggcactcccacactcaagataaatcatggctcgggcacactggtcttg
cagttgccaggcaacgtgaacgtggcggacagacggtggcaccgtctggatgtgaggagc
aacagtaaggaggtacgcttcacactggaccgctgtgctggggccaccgtcatggaaatg
gagggagtgggcagctggctgaccacagaggaccactcatcctgcgaggtcactggggtc
acgcccaacctggacaggcacctgaatgggacccaggtgttacagttgggtggagtcaat
gagaacctgccctatgtctacccgcagttacaacacaaacactttactggctgcatccgg
aacctcattgtcgacagcaagttctatgacttgggcactccagcggactttgtgggcagc
tccccaggctgtctgactacggatgggagctgtgtcaacgggggcatcccctcctgtggc
cctagggggcgctgccatggagagtggggctccttcagctgccagtgcataccgggttac
actgggaatcagtgtgagcaggaagttccagagtattcctttgatgggcggagttatgtt
cattaccagttggcgtctcctctgcccgcccggcggacccaggtacaggttctggtccgg
acccgcaagcacggtagtgccatcctcagcctactgtccaaggaacagactgaatacctg
cagatagagatataccagggcctactggctgtcttctataacctgggagatggagactac
aacctgacactgccctcctatcgccttgacaatggcgagtggcacgaggtctacctggat
cgcctcgacaacgagctgaccctgcgtgtggacgggggcgggggcagacgggagaccagt
gcggctccaagccggagccgagagatcatcaccgaccctgcagtggtaatgctgggaaac
gccttcccctcaggctccaacaagagcttccagggttgcatgcgggacctgcggctgaac
ggtcgatacgtgcctctggatggccagtccagagacggggtctccgtggtcagttcccag
gggctctccgtgggctgctcctctgactcctgcaagaggaaccaatgtagcccccccttc
acctgcgttgacctctggagagtccacgagtgcaggtgtccccctggccacatggtgaag
ctgaacggtacggggaggttctgcatctacaccctgtgtgcaaggcggccgtgccaccgg
ggaacctgcgtggcacagtcgccctccaagttcacgtgccactgccccgagggctaccgg
gggcgccactgcgaagtggcgctggccatctaccaagacgatgtgggcctgagcttcagc
tccctgttcgccatttgcatctgcttcatggctctgatagtgctgctgctgggcatcttc
ctgtacacccgctggcgcagctacaagggcctaaaggagggtgtttaccacgtgtcagct
caccatgacggctgggaggacatcagagagaacgtgctcaactacgatgaggaaggagga
ggagaggaggaccagaatgcatatgatatggccgagctacagaagtctctccagcccagt
ccggcccagtctgtccagtacagccgctccagggccatccaccaacatcaccacccccac
acccagcaccaacatccccagccccaggacactcttagcaggttgagcgccagcaccgcc
ccttcctccttcaccaccaccctgcgaagggacgtgccccccaccaggacccccgcccag
ggccagagcaggcccctcctgctggccagaaagagcctgtcattctccagccaggacctg
gcccgctacctgtgtgagatcatccgggacgctgaccaggccccagagtcggcccccttc
gactccctgcaggtgttctccacggaggggggaggctcgctggccgggtccctcagctcc
ttcagctcagccgggctggaggaggacacggctaggggccaagactccctgaaggattgg
ggcccacgtttcgagaaactcaaagccctctacgagaagaccgaggccagcgacctctga
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integrated database retrieval system
