Salmo trutta (river trout): 115203230
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Entry
115203230 CDS
T08542
Name
(RefSeq) caprin-1-like isoform X1
KO
K18743
caprin-1
Organism
stru
Salmo trutta (river trout)
Brite
KEGG Orthology (KO) [BR:
stru00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
stru03019
]
115203230
Messenger RNA biogenesis [BR:
stru03019
]
Eukaryotic type
mRNA surveillance and transport factors
Factors involved in mRNA localization
Other mRNA localization factors
115203230
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Caprin-1_C
Caprin-1_dimer
EC042_2821
Motif
Other DBs
NCBI-GeneID:
115203230
NCBI-ProteinID:
XP_029623564
Ensembl:
ENSSTUG00000018642
LinkDB
All DBs
Position
12:24531923..24543279
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AA seq
689 aa
AA seq
DB search
MPSATVGNNAVQSSSPELGSGTQSEAMKQVLQVIDKKVRNMEKKKGKLDDYQAKKNKGER
LNQDQLDALTKFQEVTNNLDFARELQKSFLSLGQEIQKAVKKSARREQLQREEMEQRRLK
TVLELQFLLDRLGDEQTRQDLKQPAAGSPLLTDADLTALDNFYKLVGPERDHDVRLTDQY
EEASLHLWELLEGRDQAVAGTTYKALKETLDKVLLSGYFDRAQMHQNGVCEEEEQEEEEE
EEEEEEEQQSVVHESSGSGEQPAEPEGTVTEEYTEAIEVEASEFVNRQFIPETTYSSTGK
DQLEEWIADVQVVNSLQHQSPPQMTPEPHTVNPVSHTPDPVVRKQVVQDLMAQMQGTYNF
MQDSMLEFDGHALDPAIVLAQPMKSAQSMDLQQMGQFHSESRLSQPSSVPESTHVPMVSP
TPDGYSSTAPLYQPSHTAEPRPQTDGTDHIQASMSLSSEQSPAPSSLPSAFPPVSTPHSG
GINVNAAPFQSMQAVFNLNAPVPPTNEADSLKQNQFPGGYGQGFSSQAEHSVEEPDIQQD
TLQSAVGGFQDQVMSAAAGHQVQSPQGPGFGRQGQSFYNSRGGVPRAGPRNPRGMINGYR
GSSNGFRGGYDGYRPPFSNAPNNGYGQQAQFSTAPREYPNSTHQREGYQPGYKRGAAQGP
RGCSRVTGRGGLFKPSRGIVTQMAGHQAN
NT seq
2070 nt
NT seq
+upstream
nt +downstream
nt
atgccttcagcaacagttggcaacaatgctgttcagtcctccagcccagagttgggttct
gggacccagtctgaggccatgaagcaggtcctgcaggtgatagacaagaaggtccgcaac
atggaaaagaaaaagggcaagctggatgactaccaggccaagaagaataaaggagaacgg
ttgaaccaggatcagctggatgccttgaccaagttccaggaagtaaccaacaacctggat
tttgcaagggagttgcagaagagcttcctgtctttggggcaagagatccagaaggcagtg
aagaagtctgcccggagggagcagctgcagcgggaggagatggagcagaggcggctgaag
actgttctggagctgcagttcttgcttgaccggctgggggatgagcagacgaggcaggac
ctgaaacagcccgctgcaggctcccccctgctcaccgatgctgacctcaccgcactggac
aatttctacaagctggtgggccctgaacgggaccatgacgtcaggttgactgaccagtat
gaggaggcctccctacacctatgggaactgctagagggcagagaccaggctgtggcagga
acaacatacaaggcactgaaggagaccctggacaaggtgctgctgagtggctattttgac
agagcacaaatgcatcagaacggagtgtgtgaagaagaggagcaagaagaagaagaagag
gaggaggaggaggaggaggagcagcagtctgtggtgcatgagtcgtctgggagcggggag
cagcctgcagaaccagaaggaacagttacggaagaatacacagaggccattgaagtagaa
gcctcagagtttgtaaacagacagttcattccagaaaccacatacagcagcactggcaaa
gaccagttagaagagtggatagcagacgtccaggtggtcaattccctccagcaccagtct
cctccccagatgacccctgagccccacactgtgaacccagtctcccacacgcctgacccc
gtggtccggaagcaggttgtacaggacctcatggcccagatgcaggggacctataacttc
atgcaggactccatgttggagtttgatggccatgccctggacccagccatcgtgttggcc
cagcccatgaagtctgcacagagcatggacctgcagcagatgggtcagtttcattcagaa
tccagactttctcaaccaagctcagttcctgaatctacacacgtccccatggtctccccc
acacctgatggctactcctccacagcgcccctctaccagccctcccacacagcagagccc
cggccacagacagacggcaccgaccacatccaggcctcgatgtccctgtcgtctgagcag
tcccccgccccgtcctccttgccctctgccttcccgcccgtctccaccccccacagcggc
ggcatcaatgtcaacgcagcaccattccagtccatgcaagcggtgttcaacctgaacgcc
cccgtgccccccactaacgaagcagacagtctgaagcagaaccagttccccggcggctac
ggccagggcttcagcagccaggccgagcactccgtggaggagcctgacatccagcaggac
actctacagtccgctgtaggaggcttccaagaccaagtgatgtcagcggcagcgggccac
caggtgcagtcgccccaggggccaggctttgggcggcaaggccagtccttctataacagc
agggggggcgtgcctcgcgcaggccccaggaaccctcggggcatgatcaatggataccga
ggatcctctaacggcttcagaggaggatatgatggctatcgccctcccttctcgaacgct
ccaaacaatggttatgggcaacaggcccagttcagcacggcaccccgggagtaccccaac
agcacccaccagcgggagggatatcagccaggctacaagcggggcgcagcccagggacct
cggggttgctctcgagttacaggccgggggggactgttcaagcccagccgagggattgtg
acccaaatggctggacatcaagccaattag
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