Salmo trutta (river trout): 115203838
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Entry
115203838 CDS
T08542
Name
(RefSeq) ATP-dependent RNA helicase DDX42-like isoform X1
KO
K12835
ATP-dependent RNA helicase DDX42 [EC:
5.6.2.7
]
Organism
stru
Salmo trutta (river trout)
Pathway
stru03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
stru00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
115203838
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
stru03041
]
115203838
Enzymes [BR:
stru01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
115203838
Spliceosome [BR:
stru03041
]
Complex A
U2 snRNP components
U2 snRNP specific factors
115203838
Complex B
115203838
Complex C
U2 SnRNP specific factors
115203838
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
ERCC3_RAD25_C
P-loop_SecA
Motif
Other DBs
NCBI-GeneID:
115203838
NCBI-ProteinID:
XP_029624733
Ensembl:
ENSSTUG00000000304
UniProt:
A0A673VLJ1
LinkDB
All DBs
Position
1:complement(60257925..60265012)
Genome browser
AA seq
932 aa
AA seq
DB search
MNWSKGGPSGKRGFGFGGFSLGGGGGGGGGGGKKEELRVPQKSHTSFGGAGTAGGYGNNQ
QLPAFYKIGTKRANFDEENAYFEDDEEESSITDLPYIPAENSPTRQQFQSGGGSDSEDDP
LDAFMAQVEDQAAKDMKKLEEKEKEKKVEKGIRDDIEEEDEQEAYFRYMAENPTAGLTAE
DEDENIDYDSDGNPIAPTTKKIIMPLPPMDHSEIDYPPFERNFYNEHEELLSLTGTEVFE
LRHKLNLRVSGAAPPKLSTSFAHFGFDEQLMHIIRKSEYTQPTPIQCQGVPIALSGRDMI
GIAKTGSGKTAAFIWPMLVHIMDQKELETGEGPIAVIVCPTRELCQQIHAECKRFGKAYS
LRSVAVYGGGSMWEQAKALQEGAEIVVCTPGRLIDHVKKKATSLQRVTYLVFDEADRMFD
MGFEYQVRSIASHVRPDRQTLLFSATFRKKIERLARDILVDPIRVVQGDIGEANEDVTQV
VEIMPSGVEKWGWLTRRLVEFTSSGSVLIFVTKKANCEELATNLTQEGHSLGLLHGDMDQ
SERNKVIADFKKKSLPVLVATDVAARGLDIPSIRTVVNYDVARDIDTHTHRIGRTGRAGE
KGVAYTLLTSKDTSFAGDLVRNLEGANQSVSKELMDLAMQNPWFRKSRFKGGKGKKLNIG
GGGLGYRERPGLGAESSERSGGAAMGNYEGYSKPTGAMGDRMSAMKSAFQSQYKNHFVAA
SGMVPKLTTKSSSSSGWTSAGSLSSVPTGAPEGPDRPRVPPSLAMAPPAALGMGTKMAGF
TSAGSLSSVSDSQATAPQVYATPPSPREGPRDRHGDDRSRHGDGHYRDRRDRSERHSGGG
ERDRHGERDRHADRDRYGDKDRHGSSGRHGDSRNGDGSRRDRERDDCRGDRESGDRAGSE
GRGDRAEGRGDREEDGFAVPDPPKRKKSRWDN
NT seq
2799 nt
NT seq
+upstream
nt +downstream
nt
atgaactggagcaagggtggcccaagtggtaagcgagggttcgggtttggaggattttcc
cttggtggtggtggtggtggtggtggtggaggaggaaagaaagaagaactgcgcgtgcct
cagaaatcccacacgtccttcggaggcgcagggacagctggaggttatggcaataaccag
caactccctgcattctacaagataggaacaaaaagagcaaattttgatgaagagaatgcg
tattttgaagatgatgaagaggagtcaagcatcacagatttgccatatatcccagctgag
aactcccccacacggcaacaattccagtctggagggggctcagacagtgaggatgatcct
ctggatgccttcatggcccaagtggaggaccaagcagctaaagacatgaagaaactggag
gaaaaagagaaggaaaagaaggttgaaaagggtatacgtgatgacattgaagaggaagat
gaacaagaagcttacttccgctacatggcagagaatcccacagctgggctgactgcagag
gatgaggatgagaacatagactacgacagtgatgggaatcccattgcccccaccactaag
aagatcatcatgcccctgcccccgatggaccactctgagattgactacccaccttttgag
aggaacttctacaacgagcatgaggagcttctcagcctgacaggcacagaggtgtttgag
ctgagacacaaactcaacctgcgggtgtctggtgccgcccctcctaaactctccaccagc
ttcgcccactttgggtttgacgagcagctgatgcacataatccgcaagtcggagtacact
cagccaacacctattcagtgccagggagttcccattgccctgagtggacgtgacatgatt
ggcattgcgaaaactggtagtggcaagactgcagccttcatctggcctatgctagttcac
atcatggaccagaaggaactggagactggagaggggcccatcgcagtcatcgtgtgcccc
accagggagctctgtcagcagatccacgcggagtgtaagcgttttgggaaagcctactcc
ctgcgctcggtggcggtgtatggaggaggcagcatgtgggagcaggccaaggctcttcag
gagggggcagagatagttgtgtgcaccccgggtcgtctgattgaccatgtgaaaaagaag
gccacctctctacagagagtgacatacctggtgtttgatgaggcagatagaatgtttgat
atgggctttgagtatcaagtgagatccattgccagccatgtccgacctgatcgacagact
cttctattcagcgccaccttccgtaagaagattgagaggctggctagagatatcctggtg
gaccccatccgtgtggtgcagggagacatcggggaggccaatgaggatgtgacccaggta
gtggagatcatgcccagtggggtggagaagtggggctggctgacccgccgcctggtggag
ttcacctcctctggctctgtacttatctttgtcaccaagaaggccaactgtgaagagctg
gccaccaacctgacccaggagggccacagcctgggcctgctgcacggagacatggaccag
agtgagaggaacaaggtcatcgctgacttcaagaagaagagtctgcccgtgctggtggcc
accgacgtggcagcccgtggtctggatatcccttcaatacgcacagtagtgaactatgat
gtggctcgggacatcgacacacacacacaccgcattggccgaacaggtcgtgctggagaa
aagggtgttgcctacacccttctcaccagtaaagacacatcatttgcaggagaccttgtg
cgtaacctggagggagccaatcaaagcgtctctaaggaactgatggacttggcaatgcag
aatccctggttcaggaaatcacgcttcaagggcggcaaagggaagaagctaaacattgga
ggaggtggtctgggctacagagagaggccaggattgggagctgaaagttctgagcgtagt
ggtggtgctgccatgggtaactatgagggctacagcaagcctaccggagccatgggtgac
cgcatgtcagcaatgaaatcagccttccagtctcagtataaaaaccactttgtggcggcg
tccggcatggttcctaaactcaccacaaagtccagtagctcttcaggctggaccagcgct
ggaagtcttagctctgtccccactggggcccctgagggcccagaccggcctcgtgtgccc
ccctccttagccatggcccctccagcagccctcggcatgggcaccaagatggcaggcttc
accagcgccggctccctgagctctgtgtcagacagccaggccactgctcctcaggtgtat
gccaccccaccctcacccagggaagggccccgtgacagacatggtgatgacaggagtcgc
catggagatggccactatcgtgacaggagagacaggagcgagcggcacagtggcggggga
gagcgggaccgccatggggagcgggaccgccacgcagaccgcgacagatacggggacaag
gatcgccatggcagcagcgggcgccatggcgatagtcgtaatggagacggaagtagaagg
gacagagagcgagacgattgcagaggtgacagggagagtggagacagggcagggagtgaa
ggaaggggggacagagctgaggggagaggagaccgagaggaagacggctttgcagtccca
gatccaccaaaacgcaaaaagagtaggtgggacaactaa
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