Salmo trutta (river trout): 115204142
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Entry
115204142 CDS
T08542
Name
(RefSeq) retinoic acid receptor RXR-alpha-A isoform X1
KO
K08524
retinoid X receptor alpha
Organism
stru
Salmo trutta (river trout)
Pathway
stru03320
PPAR signaling pathway
stru04148
Efferocytosis
stru04920
Adipocytokine signaling pathway
Brite
KEGG Orthology (KO) [BR:
stru00001
]
09140 Cellular Processes
09141 Transport and catabolism
04148 Efferocytosis
115204142
09150 Organismal Systems
09152 Endocrine system
04920 Adipocytokine signaling pathway
115204142
03320 PPAR signaling pathway
115204142
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
stru03000
]
115204142
09183 Protein families: signaling and cellular processes
03310 Nuclear receptors [BR:
stru03310
]
115204142
Transcription factors [BR:
stru03000
]
Eukaryotic type
Zinc finger
Cys4 hepatocyte nuclear factor 4-like
115204142
Nuclear receptors [BR:
stru03310
]
2. Hepatocyte nuclear factor 4 like
2B. Retinoid X receptor (RXR)
115204142
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Hormone_recep
Nuc_recep-AF1
zf-C4
tRNA_bind_3
Motif
Other DBs
NCBI-GeneID:
115204142
NCBI-ProteinID:
XP_029625347
Ensembl:
ENSSTUG00000024378
UniProt:
A0A674ACE7
LinkDB
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Position
12:73635599..73797224
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AA seq
535 aa
AA seq
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METKPFMSLGFLKPQCSLAPPPQRGRSGEACSCFTGMCHLHHPRISTGNTQRHLHIPSPS
SPSWQTPHLGRHLYQINSSGQVTSSPLSSPTSHRGMHPSLLNPSSMGPSGSLHSPISTLS
SPMNGLGSPFSVINSPMGPHSMSSPGMGYGPSVSPQMFQLNSQMNSVSSSEDIKPPLGLN
GVMKVPAQPSPGCMPLSLTKHICAICGDRSSGKHYGVYSCEGCKGFFKRTVRKDLTYTCR
DNKDCLIDKRQRNRCQYCRYQKCLACGMKREVLLHTAVQEERQRAKERSENEVESTSSVN
EDMPVEKILEAELAVEPKTETYIETNLGMPSNSPNDPVTNICQAADKQLFTLVEWAKRIP
HFSELPLDDQVILLRAGWNELLIASFSHRSIAVKDGILLATGLHVHRNSAHSAGVGAIFD
RVLTELVSKMRDMQMDKTELGCLRAIVLFNPDSKGLSNPGEVEALREKVYASLEAYCKQK
YPDQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPIDTFLMEMLEAPHQMT
NT seq
1608 nt
NT seq
+upstream
nt +downstream
nt
atggaaaccaaacctttcatgtcattggggttcctgaagccccagtgctcgctggctccg
cccccccagcgaggacgctcgggggaggcctgctcctgtttcaccggcatgtgtcacctc
caccacccccggatatctacaggtaacactcaacgccatctccacatcccctcgccatct
tccccgtcatggcagactccgcacctgggaagacacctgtatcaaataaattcatcaggt
caggtgacctcatctccactgagctctcccacgtcccaccggggcatgcacccatccctg
ctcaacccgtcctccatggggccctcaggctccttgcactctcccatcagcaccctgagt
tctccgatgaacggcctgggctcgcccttttctgtcatcaactcccccatgggcccacac
tccatgtcctcgcccggcatgggctacggccccagtgtcagcccccagatgttccagctg
aactcccagatgaactcggtcagcagctcggaggacatcaagcccccgctgggtctcaac
ggggtgatgaaggtgccagcccagccctcgccggggtgcatgcctctctccctcaccaaa
cacatctgtgccatctgcggagaccgctcctcaggtaaacattatggagtgtacagctgt
gagggctgtaaaggcttcttcaagaggacagtgcggaaggacctgacctacacctgccga
gacaacaaggactgtctaatcgacaagcgccagcgcaaccgctgccagtactgtcgctac
cagaagtgtctggcctgtggaatgaagagagaagttttgttacacacagccgtccaggag
gagcgccagcgggccaaagagcgcagcgagaacgaggtggagtccaccagcagcgtcaac
gaggacatgcccgtggagaagatcctggaggccgagctcgctgtggaacccaagacagag
acctacatcgagaccaacctgggcatgccatccaactcgcccaacgacccggtgactaac
atctgccaagcagccgacaagcagctctttacactggtggagtgggccaagaggatcccc
cacttctctgagctgcccctggacgaccaggtcatcctcctacgagcagggtggaatgag
ctactcatcgcatccttctcacaccgttcaatagcggtgaaagatgggatcctcctagca
acagggctacacgtccatcgtaacagcgcccacagtgctggagtgggagccatctttgac
agagtgctcacagaactggtgtccaagatgagagacatgcagatggataagacagagctg
gggtgccttcgagccatcgtcctctttaacccagattctaaaggcttgtcaaacccagga
gaggtggaggctttgagagagaaggtctacgcctctctggaggcctactgcaaacagaaa
tacccagatcagcctggcaggtttgccaagctgttgctgcggttaccagccctgcgttcc
attggtctgaagtgtctggagcacctgttctttttcaagctcatcggggacacgcccatc
gacaccttcctcatggagatgctagaggcgccccaccaaatgacataa
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