Salmo trutta (river trout): 115204275
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Entry
115204275 CDS
T08542
Name
(RefSeq) nuclear RNA export factor 1-like
KO
K14284
nuclear RNA export factor
Organism
stru
Salmo trutta (river trout)
Pathway
stru03008
Ribosome biogenesis in eukaryotes
stru03013
Nucleocytoplasmic transport
stru03015
mRNA surveillance pathway
stru05168
Herpes simplex virus 1 infection
Brite
KEGG Orthology (KO) [BR:
stru00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
115204275
03015 mRNA surveillance pathway
115204275
03008 Ribosome biogenesis in eukaryotes
115204275
09160 Human Diseases
09172 Infectious disease: viral
05168 Herpes simplex virus 1 infection
115204275
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
stru03019
]
115204275
03009 Ribosome biogenesis [BR:
stru03009
]
115204275
Messenger RNA biogenesis [BR:
stru03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Nuclear pore complex
115204275
mRNA cycle factors
Stress granule specific factors
115204275
Ribosome biogenesis [BR:
stru03009
]
Eukaryotic type
Pre-60S particles
Export and cytoplasmic maturation factors
115204275
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LRR_NXF1-5
NXF_NTF2
Tap-RNA_bind
TAP_C
NTF2
UBA_8
LRR_8
LRR_4
LRR_9
Motif
Other DBs
NCBI-GeneID:
115204275
NCBI-ProteinID:
XP_029625582
Ensembl:
ENSSTUG00000032395
LinkDB
All DBs
Position
12:78709347..78732223
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AA seq
632 aa
AA seq
DB search
MSTADDSRYCNDHDDRVGGQKVRNRKGRGPFRAPMYSDQGPVGPRPRHRGSQRGGGGPGP
RARFDDEDGDVAMTDSNSQDGSSQHRFNPYGRPNRRGDDRFDRGRRGGGGGHRGRGNNKG
GDGGGGGRKNWFKMSVPYGKKYDKDWLITALQNICSMPFTPVHYHVEGNRAEFFIEDSTT
ANALFKVSRKITDKEGYKVTVLMNPCPPPSFLQSELKPADLEHLKQCMAKRFDGSQQALD
LNNIRIDPDLVSQNIDVTLNRKNSMRAVIKIIEENIPELVCLNLSNNKLFRLDDLSELVN
KVPNLKTLNLSHNELKTERELDRIKGLKLVELWLERNPLCDYFKDQASYISEVRERFPRL
LKLDGQDLPPPIVFDVEVTPDALPPCKPSYFCSEEIKTPIVGFLQQYYSVYDSGDRQPLL
DAYHDGATFSLSMPFTMQNPSRCSLGDYHKDSRNLKKLKDPTTRFRLLKHTRLNVVAFLS
ELPKTQHDTASLIVDVNTFTNTLLSFTVTGVFKEVEGKSRDSVRAFCRVFVTVPAGGTSL
CIVNDELFVRNATTEEIRRAFVAPAPTPSSSPVPTLSAPQQEMLSAFSLKSGMNLEWSQK
CLQDNEWDFNRAAQVFTDLKAHGKIPDVAFIK
NT seq
1899 nt
NT seq
+upstream
nt +downstream
nt
atgtcaacagccgacgattcacgttactgcaacgatcacgatgaccgagttggaggacaa
aaggttcgcaaccgtaaaggcagagggcctttcagggcccctatgtatagtgaccagggg
ccagtaggaccaagaccaagacatcgtggtagccaaagaggcggcggcggcccgggaccc
agagcgagattcgacgatgaggatggagatgtggcaatgacggacagcaactcccaagat
ggatcctcccaacacagatttaacccttatggaaggccaaatcggcgtggtgacgaccgc
tttgaccggggccgcagaggtggtggaggaggtcacaggggtcgtgggaataacaaagga
ggggatggaggtggaggtggccgcaagaactggttcaagatgtctgtcccctatggaaag
aaatacgacaaagactggctgataacagcactgcagaatatctgctccatgcccttcacc
ccagtacattaccacgtggagggaaaccgagcagagttctttattgaggattccacgact
gcgaatgccttgtttaaggtatcacggaagatcacagacaaagagggctacaaggtgact
gtactgatgaatccctgtcctccaccctcctttctccagtctgaactaaagccagctgat
ctggagcacctgaagcaatgcatggctaaacgttttgatggctctcaacaagccctggac
ttgaacaacatccggatagacccagacctggtgtcccagaacattgatgtgactttgaac
agaaagaactccatgcgtgctgttattaagataattgaggagaatattccagagcttgtg
tgtctgaaccttagcaacaacaagctatttaggctggatgacctgtcagagctggtcaac
aaggttcccaacctgaagacactcaacctttctcataacgagttaaagacagagcgcgag
ctggacaggatcaagggtcttaagctggtggagttatggctggagaggaaccccctttgc
gactatttcaaggaccaggcttcatacatcagcgaggtgagagagaggttccccaggctt
ctcaaactggacggtcaggatctccccccgcccatagtctttgatgtggaggtgactcct
gacgcccttccaccttgcaagcccagctacttctgctctgaagagatcaagactcccatc
gttggcttcctacaacaatactacagtgtgtatgactccggagacagacagcctttgtta
gatgcctaccatgatggagcaaccttctccttgagcatgcccttcaccatgcagaacccc
tccaggtgcagtcttggagattaccataaagacagtcgcaacctgaaaaagctcaaggat
cccaccacacgattccgcttactgaagcacactcgtctgaatgtggtggctttcctgagc
gaactgcccaaaacgcagcatgacaccgcatctctaattgtggacgtcaacaccttcacc
aacacgttactgtcgttcacggtcactggagtgttcaaagaagttgaaggtaaatcccgc
gactctgtgagagctttctgccgggtgtttgtcacagtgccagctggagggacaagtctt
tgcatagtgaatgacgagctgtttgtgcgcaacgctacgactgaggagatccgccgggcc
tttgtggcacctgcccccaccccatccagcagtcctgtccccaccctctcagccccccag
caagagatgctctctgccttctccctcaagtccggcatgaatcttgaatggtcccagaag
tgcctacaggacaatgagtgggatttcaaccgagcagcgcaggtcttcacagacctcaag
gctcatggaaagatcccagatgttgctttcataaagtga
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