Salmo trutta (river trout): 115204357
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Entry
115204357 CDS
T08542
Symbol
sympk
Name
(RefSeq) symplekin isoform X1
KO
K06100
symplekin
Organism
stru
Salmo trutta (river trout)
Pathway
stru03015
mRNA surveillance pathway
stru04530
Tight junction
Brite
KEGG Orthology (KO) [BR:
stru00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
115204357 (sympk)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04530 Tight junction
115204357 (sympk)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
stru03021
]
115204357 (sympk)
03019 Messenger RNA biogenesis [BR:
stru03019
]
115204357 (sympk)
Transcription machinery [BR:
stru03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
115204357 (sympk)
Messenger RNA biogenesis [BR:
stru03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage stimulation factor (CSTF) complex
115204357 (sympk)
U7-dependent histone pre-mRNA processing factors
115204357 (sympk)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Symplekin_C
SYMPK_PTA1_N
PDS5
Adaptin_N
Cnd1
Motif
Other DBs
NCBI-GeneID:
115204357
NCBI-ProteinID:
XP_029625720
Ensembl:
ENSSTUG00000032251
LinkDB
All DBs
Position
12:complement(80767259..80778967)
Genome browser
AA seq
1267 aa
AA seq
DB search
MNNKGSNKKMASNNGESAGVRTSVASQFFNEDEDTAIVDMTTSEKVVDLLNQAALIATDS
KLTVLKQVQELIINKDPSLLDNFLDEIIAFQTDKSMEVRKFVIGFIEEACKRDNELLLKL
IANLNMLLKDESVNVVKKAILTLTQLYKVALQWFVRSKTMSDMQEACWDMVTQMKEDVLA
MLEVDNDGVRTHAIKFTESLIITLSPRTSDSDTPKRQEGDISLDKISKDHAYIRYDTLCG
EGKSALEQLLKFMVHPAISSINLTTALGSLATLARQRPMFMSEVVQAYETLHANLPPTLA
KSQVSSVRKNLKLHLMAVLKHPCSLEFQGQISTLLLDLGMSQNEITRNTPAPREPRKRPR
HEPYTEGKKLKIEPALIEDDEDKEEPAPPSISKPSSVPVVQSAIDLTAEFLRPLLSPENV
ANLVLISMVYLPDVMPASFQATYTPVESAGTDAQIKHLARMMATQMTAAGVGPGLEQCKA
RDEKAGKEEGMDEGIGESSKDLLIKRKVPVMGQAISVVGGGYGDKSQTETGEAPQVKRLP
EPILPSTQIKTPGASGKRKVFRLADVIQPLTDTQLEKLTNMAVKRILHSEKAIAQSGMAH
VRVKLLSRLVTQFEGMMKDDVLEFILEDIRTRSDLAFSLLYQEYNTYLSQQPTGLLDSYD
HCLFTLLSGLQEKPEQRDGLFTKIVLEAPLITESALEVIRRYCEDESRVYLGMTTLKELI
VKRPSRQFQYLHVLLDLSSHEKEKVRSNALSFIKRMYEKDQLRDYIEKFALNYMQLLVHP
NPPSLLFGADKDTEVASPWTEDTVRQCLYLYLSLLPLNHRLVHELASVYTEAIADIKRSV
LRVIEQPIRGMGMKSPQLLLLVENCPKGAETLVTRCLHILTDKVPPSPELVERVRDLYHK
RVPDVRFLIPVINGLEKKEVTQALPKLIKLNPIVVKEVFNRLLGTQHSEGSSSMSPLTPG
ELLISLHNVDSTKCDMKSIIKATNLCFGEKNVYTSEVLAVVMQQLMEQSPLPILLMRTVI
QSLSMYPRLGGFVMNILSRLIVKQVWKYPKVWEGFVKCCQRTKPQSYSVLLQLPPAQLTS
VFERCPEMREPLLQHVHSFTPHQQAHIPASIMTVLEANSKQPEPEAMQPVVLERQVETPI
ATIAPNVTIAPVATFAPVATPPVRAEPIPVPLRDPEPAVQQHLPNKKEEEEPMEEGETAP
ASQEETADTTLQVDLPVVEENPTLDPIETVEEPMEEAPTEPSDVTDQLKDVTEDGTTQPE
TGTGDAE
NT seq
3804 nt
NT seq
+upstream
nt +downstream
nt
atgaataataaaggatctaataagaagatggcctcaaataacggagaaagtgctggtgtg
aggaccagtgtggcatcacagtttttcaatgaagacgaggacacggctattgtcgatatg
accaccagtgaaaaggttgttgatctcctgaaccaagcagctcttattgctacagacagc
aaactgacggttctcaaacaggtccaggaactgatcatcaacaaggacccctctttactt
gacaatttcttagatgagatcatagcctttcagacagataagtcaatggaagtaagaaag
tttgtcattggcttcattgaggaagcatgtaagagggacaacgagctcctgcttaaactg
attgccaacctgaacatgctgctgaaggacgaaagtgtcaatgtggtgaagaaggctatc
ctcacactcactcagctctacaaagtggcactgcagtggtttgtgcgttccaagaccatg
tcagacatgcaggaagcatgctgggacatggtgactcagatgaaggaggatgttctggct
atgctggaagttgacaacgatggagtccgcactcatgctatcaagttcacagagtctctc
atcatcactctttcaccgaggacgtcagactctgacactcccaagcgccaagagggagac
atcagcctggataaaatctcaaaagaccatgcctatatccgctacgataccctgtgtggg
gagggcaagtctgcgctggagcagcttctgaagttcatggtccaccctgctatctccagc
atcaacctgaccacagccctgggttctctggccacactggcccgacagaggcctatgttt
atgtctgaagtggtccaggcttatgagactctgcatgccaacctacccccaacgctggcc
aagtctcaggtgagcagtgtacgcaagaatctgaagttacacctgatggcagtgctcaag
cacccctgcagcctggagttccagggccaaatcagcactctgctcctagacctggggatg
tcccagaatgaaataacccgcaacacgccagccccacgtgaaccgcgcaaaaggccccgc
catgagccctacacagagggcaaaaagctcaagattgagcccgctcttatagaagatgat
gaagataaagaagagccagcccccccttccatctccaagccctcctctgtaccagtagtc
cagtcagcaatcgacctcactgcagagttcttgcgccccctgctctccccagagaacgtg
gccaatctggttctaatcagcatggtgtacttgcctgatgtcatgccagcgtccttccag
gccacatacacaccagtggagtctgcaggaacagatgcccaaatcaaacacttggccaga
atgatggccactcagatgacagcagctggagttggaccaggactggagcagtgcaaagca
cgagatgagaaagctggaaaggaggagggcatggatgaaggcataggggagtcctccaaa
gacctgctcatcaagcgtaaagtaccagttatgggccaagccatctctgtggttggagga
ggctatggagataagagccaaactgaaacgggggaagccccccaggtcaagaggctgcct
gagcccatcctcccctccacacagatcaaaacacctggtgcaagtgggaagaggaaagtg
ttcagattagctgatgtgatccagcctttgacagacacccagcttgaaaagttgaccaac
atggctgtcaagcgcatcctgcactcagaaaaagctatagcacagagtgggatggcccat
gtgcgcgtgaagctgctgtccagacttgtgactcagtttgaggggatgatgaaggatgat
gtgctggagttcattctggaggacattaggaccaggagcgacctggccttctctcttctt
taccaggagtacaacacatacctcagtcagcagcccactggcttgttggacagctacgac
cactgcctcttcactctactgtccggcctgcaggagaagcccgagcagagggatgggctt
ttcacaaagattgtgctggaggctccgttaattacagaatctgctttggaagtaatacga
cggtactgtgaagatgagtcgcgggtgtacctcggcatgactactctaaaagagctgatt
gtaaaacgaccctcaaggcagttccagtacctccatgtgcttctggatctcagctcacat
gaaaaggagaaggtgcgctccaatgccctgtccttcataaagcggatgtatgagaaagac
cagctgagggactatattgagaagtttgccctgaactacatgcagctcctcgtacaccct
aaccctccgtcgttactttttggggctgacaaggatacagaggtggcctccccctggaca
gaggacacagtgaggcagtgtctgtacctctacctgtcccttctgcctctcaaccaccgc
ctggttcatgagctggcctctgtctacactgaagccattgctgacatcaagcgcagtgtg
cttcgagtgatagagcagccaatccgtggaatggggatgaagtctccacagcttctgctg
ttggttgaaaactgtcctaaaggagcagagactctggtcactcgctgcctgcacattctc
actgataaagtgcctccgtcaccagagttggtggagagagtgagggacctgtatcacaaa
cgagtgcccgacgttcgtttcctaattcctgtcatcaacggcctggaaaagaaagaggtg
acccaggctcttcccaagcttatcaagctcaaccccattgtggtgaaggaagtcttcaac
cgtctcctgggcacccagcatagcgagggtagttcctcaatgtctcctctcacccctggc
gagcttctaatttctttacacaatgttgactcaacaaagtgtgacatgaagtccatcata
aaagccaccaacctgtgttttggggagaagaatgtgtacacgtcagaggtcctggctgtg
gtaatgcagcagctgatggagcagagtcctctccccattctgctgatgagaacagttatc
cagtccctcagcatgtacccccgcctgggaggcttcgttatgaacatcctgtcccgactc
attgtcaagcaggtgtggaagtatcctaaggtgtgggagggctttgtgaagtgctgccag
aggaccaagccgcagtcctacagcgtgctgctgcagctcccaccagctcagctgaccagt
gtgtttgagcgctgcccggagatgagggaacctcttctacagcatgtccactctttcacc
ccccaccagcaagcccacattcccgcctccatcatgacagtcctggaggccaacagcaag
cagccagaaccagaggccatgcagcctgtagtattggagagacaggttgagacacccatt
gcaaccatcgcacccaatgtaaccattgcaccagttgcaaccttcgcacctgttgcaacc
cctccagtacgggcagaacctattccagtaccgctgagagatccagagccagcagtccag
cagcatctgccaaataaaaaagaggaagaggagcccatggaggaaggagagacggcccct
gctagtcaagaggaaactgcagacaccactttgcaggtggatttgccagtagtggaagaa
aaccccactctggatcctatagagaccgtggaggaaccaatggaggaggcacctactgaa
ccttcagatgtcactgaccaattaaaagatgtcaccgaagacggtaccacacaacctgag
actggcacaggagatgcagaatga
DBGET
integrated database retrieval system
