Salmo trutta (river trout): 115205170
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Entry
115205170 CDS
T08542
Name
(RefSeq) ATP-binding cassette sub-family A member 1-like
KO
K05641
ATP-binding cassette, subfamily A (ABC1), member 1
Organism
stru
Salmo trutta (river trout)
Pathway
stru02010
ABC transporters
stru04148
Efferocytosis
Brite
KEGG Orthology (KO) [BR:
stru00001
]
09130 Environmental Information Processing
09131 Membrane transport
02010 ABC transporters
115205170
09140 Cellular Processes
09141 Transport and catabolism
04148 Efferocytosis
115205170
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02000 Transporters [BR:
stru02000
]
115205170
Transporters [BR:
stru02000
]
ABC transporters, eukaryotic type
ABCA (ABC1) subfamily
ABCA1, 2, 3, 4, 7, 12, 13 subgroups
115205170
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SSDB
Ortholog
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Gene cluster
GFIT
Motif
Pfam:
ABC_tran
ABC2_membrane_3
R1_ABCA1
AAA_21
SRP54
DUF4162
Motif
Other DBs
NCBI-GeneID:
115205170
NCBI-ProteinID:
XP_029626735
Ensembl:
ENSSTUG00000017159
LinkDB
All DBs
Position
13:10962453..11005698
Genome browser
AA seq
2299 aa
AA seq
DB search
MSISTQLGLLLWKNFTYRRRQTLQLLIEIVWPLLIFFILISVRLNYPPYEQHECHFPNKA
MPSAGTLPWIQGIICNANNPCFRNPTPGESPGVVGNFNESIISRLFSDAKKILLYSQNDR
NLDGFKDLIQALKTLQAKTEGFKLKDFLHDNETLSTFLLRNASFSEHAVHQIIEADVNLE
KVLIKGFGVHLRDMCKSNGTSVEDFVTITDSEVSSLVQEILCRSPGSWLNQAESHFLNNL
DFLKPIRKDVRADPEAVQQVAEATDNLLESLGSLAIELASMKSWSDLRNEIIFLTENATS
SPSHMYQAVSRIVCGHPEGGGLKIKSLNWYEDSNYKALFGNHNTTDGEEPISAYDNASTP
YCNAMMRNMESSPVSRMIWQALKPLLMGKILYTPVTPATQKIIHEVNRTFQELGVLRELG
GMWEEVRPKVWTFMESSEQMDLVRTLLKNNGTARFFTSQLAGTEWTVEDVSNFLTKHSED
TRPHGTAFTWREVFNETDQAIMSISRFMECVNLDKMEPVANEERMVNKSMALLDDRKFWA
GIVFPDIEANSSELPAIVNYKIRMDIDNVERTNKIKDGYWDPGPRADPFEDLRYIWGGFS
YLQDIIEHSIITVVTGAKEKTGVYIQQMPYPCYVDDIFLRVMSRSMPLFMTLAWMYSVAI
IIKSVVYEKEARLKETMRIMGLDNGILWFSWFISSLIPLLISASLLVVLLKMGNLLPYSD
PGVIFLFLGSFAVVTIMQCFLISTMFDRANLAAACGGIIYFTLYLPYVLCVAWQDYVGFG
AKLVASLLSPVAFGFGCEYFALFEEQGIGIQWNNLFNSPMEEDDFSLTTAIIMMYFDSFL
YMVMTWYIESVFPGQYGIPRPWYFLFTKSYWFGEGDNRKTDFSQNKRRNCEAVCIEEEPA
HLKPGVFIENLVKVYPHGKKLAVDGLTLGFYEGQITSFLGHNGAGKTTTMSILTGLFPPT
SGTAYIMGKDIRSELSAIRQSLGVCPQHNVLFSMLTVEEHIWFYARLKGLSEEQVKSEIE
QILIDTGLLHKRTSKTSTLSGGMQRKLSVALAFVGGSKVVILDEPTAGVDPYARRGIWDL
LLHYRQGRTIILSTHHMDEADILGDRIAIISHGKLCCVGSSLFLKNQLGTGYYLTLVKKG
PEPSLSSFHNSSSTVSFTKKEEDCPSESSSDAGLGSEHESEAATIETAQAASICESAFVA
PDVSMISSLIFKHVPAARMVEDLGHELTYILPYGAAKDGAFVELFKDMDDRLPDLGISSY
GVSDTTLEEIFLKVAEDNGVDTELPSDGTLPMPRRRIHHAFGGGNAFGGDHQSCLRPQID
DDNNEHNDSDAYPESRETDFLNGSDGKGSYQVKGWSLTRQQFVALIWKRFLYAQRSRKGF
FAQIVLPAVFVCIALVFSLIVPPFGKYPSLELQPWMYEEQSLFISDDAPEDANTQRLLSA
LTEGPGFGTRCMEGQPITDTHCTMGDEDWTIPEVPESLLELFRTGNWTMEEPSPTCACSC
DGRKKMLPECPTGAGGLPPPQMKISETDTLQNLTGRNISDYLVKTYAEIIGKSLNNKIFV
NEFRYGGFSLGARSTQVLPPAGEVDDAIARVRKIFELEKGAAADRFLESLSSFINGLDTK
NNVKIWFNNKGWHSMGAFLNVMNNGILRANLPPGKDPSKFGIRTFNHPLNLTKEQLSQVA
LMTTSVDVLVSICVIFAMSFVPASFVVFLIQERVSKAKHMQFISGVQPLLYWTANFIWDM
CNYIVPATLVIIIFVCFQQKAYVSSTNLPVLALLLLLYGWSITPLMYPASFFFKIPSTAY
VVLTSVNILIGINGSISTFVMELFGNNEIGGINDILKNVLLIFPHFCLGRGLIDMVKNQA
MADALERFGENRFRSPLEWDMVGKNLFAMAVEGVVFFIITVLIQYRFCIKPINLHTKLPP
VGEEDEDVARERQRIVNGLGHGDILELRQLTKVYKRKQKPAVDRLCVGIPPGECFGLLGV
NGAGKTTTFKMLTGDSIVTSGEAFLAGKSILREIDEVHQNMGYCPQFDAINDLLTGREHL
EFYAVLRGVPEKEVCEVAEWGIRKLGLVKYVDKAAGSYSGGNMRKLSTAMALIGGPPVVF
LDEPTTGMDPKARRALWNCIHSVIKEGRSVVLTSHSMEECEALCTRMAIMVNGRFRCLGS
VQHLKNRFGDGYTIILRVAGPDPDLPPVMKFIESKLPGSTLKEKHRNMLQYQLSSSLTSL
AHIFSILAKNKDLLRIEDYSVSQTTLDQVFVNFAKDQSDDYHSKDNSVKRKEAVVDITPL
SSRQAEEKLAEERLKESLV
NT seq
6900 nt
NT seq
+upstream
nt +downstream
nt
atgtccatctcaactcagctgggcttgctgttgtggaagaactttacctacagaagaagg
caaacgctccaactgctgattgagatagtatggcccctgttgatcttcttcattttgata
tcagtgagactgaactaccctccgtacgaacaacatgagtgtcatttccccaacaaggcc
atgccctcggcaggcaccctgccgtggatccaaggcatcatctgcaacgccaacaacccc
tgcttccgcaaccccactcctggagagtcccctggggttgtgggcaacttcaatgagtcc
ataatctctcgtttgttctcggatgccaagaaaatcctgctgtacagtcagaatgaccgg
aatctggacggctttaaagaccttatccaggccctgaagaccctacaggccaaaaccgaa
ggattcaagctgaaggatttcctccacgacaatgagaccctgtccactttccttctgcga
aacgcctccttctcggaacacgccgtgcaccagatcattgaggccgacgtgaacttggaa
aaggtgctgatcaaaggcttcggtgtccacctgagggacatgtgcaaaagcaacggcacc
agtgtggaggactttgtgaccatcacagacagcgaggtgtccagtctggtccaggagatc
ctctgccggtccccaggctcctggctcaaccaagcagaaagccacttcctcaacaacctg
gacttcctcaaaccaatacggaaagatgtgagggctgaccctgaagctgtccagcaagtg
gctgaggctacagacaaccttctggagagcctggggtccctggccattgagctggccagc
atgaagagttggagcgacctgcgtaacgagatcatcttcctcactgagaacgccacgtcc
tcccccagccacatgtaccaggccgtgtcacgcatcgtctgcggccaccccgagggcggc
ggactaaagatcaagtccctcaactggtacgaggacagcaactacaaggccctgttcggc
aaccacaacacaaccgacggggaggaacctatctctgcctacgacaacgcatccactcca
tactgcaatgcaatgatgaggaacatggagtccagccccgtatccaggatgatctggcag
gccctgaagcctctgctcatggggaagatcctatatacccctgtcactcccgccacacag
aagatcatccacgaggtgaacagaacgttccaggagctgggggtcctcagagagctgggg
ggcatgtgggaggaggtgaggcccaaggtctggaccttcatggagagtagcgaacagatg
gacctagtaaggaccctactgaagaacaatggtaccgccaggttcttcacctcccaactg
gcgggcacagagtggaccgtggaggatgtctccaacttcctgaccaaacattcagaggac
acacgtccccacggcaccgccttcacctggagggaagtcttcaacgagacggaccaggcc
atcatgagcatatcccgcttcatggagtgtgtaaacctggataagatggagcccgtggcc
aatgaggaaaggatggtcaacaaatccatggcactcctggacgacaggaagttctgggcg
gggatcgtgtttcccgacattgaggccaacagctctgaactgccggccattgtcaactac
aagatccgcatggacattgataatgtggagcgcaccaacaagatcaaagacggatattgg
gaccccggtcctcgtgccgacccctttgaggacctgcgctacatctggggcggcttctct
tacctccaggacatcatcgaacacagcatcatcacggtagtgactggcgccaaggagaag
acgggagtctacatccaacagatgccctacccctgctacgtggacgacatcttcctgcgg
gtgatgagtcgctccatgcccctcttcatgaccctggcctggatgtactctgtggccatc
atcatcaagagcgtggtttacgagaaggaggcgaggctcaaggagaccatgaggatcatg
ggattggacaacggcatcctgtggttcagctggttcatcagcagcctcatccccctgctc
atctccgccagtctgctcgtggtgctgctcaagatggggaacctgctgccctacagtgac
cccggtgtcatcttcctgttcctgggttccttcgccgtggtaaccatcatgcagtgcttc
ctcatcagcaccatgtttgaccgtgccaacctggcggcagcctgtgggggtatcatctat
ttcaccctctacctgccctacgtcctctgtgtggcctggcaggactacgtgggctttggg
gcaaaattagtcgctagcctgctgtccccggtggcctttggctttggctgtgagtacttt
gccctgttcgaagagcagggcatcggcatccaatggaacaacctgttcaacagccccatg
gaggaggacgacttcagcctgaccaccgccatcatcatgatgtactttgactccttcctc
tacatggtgatgacctggtacatcgagtccgtcttccccggtcaatatggtattcccagg
ccctggtacttcctcttcaccaagtcctactggtttggagaaggagacaacaggaagact
gacttcagtcagaacaagagaagaaactgtgaagctgtctgtatagaggaagagccagcc
cacctgaaacctggcgtcttcatagagaacctagtcaaggtgtacccgcacgggaagaag
ctggctgtggacgggctgactctgggcttctacgagggacagatcacctctttcttgggc
cacaacggagcagggaaaaccaccaccatgtcgattctaacgggactgtttccccctacc
tctggaactgcttacatcatggggaaagacatccgatcggagctgagcgctattcgacag
agtctgggcgtttgtccacagcacaacgttctcttcagcatgctgaccgtcgaggagcac
atctggttttacgctcgtctgaagggtctatctgaggaacaggtgaagtctgagatcgaa
cagatcttgatagacactggcctgctgcacaaacgcacttccaagaccagcacactgtcc
ggagggatgcagaggaagctctctgtggctctggcctttgtcggggggtcaaaggttgtg
attctggacgagcccaccgctggggtcgacccctacgcccgccggggcatctgggacctc
ctgctccattatcgtcaaggtcgtaccatcatcctctccacccaccacatggatgaagcg
gacatattgggcgaccgcatcgccataatctcccatggcaagctttgctgcgtgggctcc
tccctcttcctgaagaatcagctgggtacaggctactatctgaccctagtcaagaagggc
ccagaaccttcccttagctccttccacaactcctccagcaccgtctccttcactaagaag
gaggaggactgtccctccgagagcagctctgacgcaggccttggcagcgaacacgagagc
gaagcggccaccatcgaaactgcccaggctgcatccatctgtgaaagtgccttcgtggcc
cccgacgtctccatgatctccagcctgatcttcaagcatgtcccagccgcccgcatggtg
gaagacctgggccacgagctcacttacatactgccctatggcgcagccaaggacggagcc
ttcgtggagctcttcaaggacatggacgaccgtctccccgacctaggcatctccagctac
ggcgtctccgacaccaccctggaagagattttcctgaaagtggcagaggacaatggagtt
gacactgaactcccctctgacggtaccctccccatgcccagacgtcgcatacatcatgct
tttggtggaggaaatgcctttggtggagaccaccagagctgccttagaccgcagatagac
gatgacaacaatgaacataacgactcggacgcgtacccagaatccagagagacagacttc
ctgaacggctcagacggtaaaggctcctaccaggtgaaaggctggagtctgacgaggcag
cagtttgtcgccttgatatggaagaggttcctgtatgctcaacgctccagaaaaggtttc
tttgctcagattgtgctccctgcggtgttcgtttgcatcgccctggtcttcagtctaatc
gtcccgccctttggaaaataccccagtctggagctgcagccgtggatgtacgaagaacag
tccctcttcatcagtgatgacgcccctgaagatgccaacacacaacggttattaagtgcc
ctcaccgaaggccctgggtttggaacgcgttgcatggaagggcagccaataactgacact
cactgtacgatgggtgacgaggactggaccataccggaggttccggagagccttctggaa
ctgttccgcacgggaaactggaccatggaggagccgtcccccacatgcgcctgcagctgt
gacggccgcaaaaaaatgctccctgagtgtcctactggagccggaggactgccaccaccc
cagatgaagatcagcgagacagacaccctgcaaaacctgactggcagaaacatctctgac
tacctagtgaagacctatgcagagatcattgggaaaagtttgaacaacaagatctttgtg
aatgaatttaggtacggtggcttctcattgggcgccaggagcactcaggtcctcccccca
gctggcgaggttgatgacgctatcgctcgagtgaggaagattttcgaattggagaagggt
gctgccgcagaccgattcctggagagcttgtctagcttcatcaatggtctggacaccaag
aacaatgtcaagatttggttcaacaacaaggggtggcacagcatgggagccttcctcaac
gtgatgaacaacggcatcctgcgcgccaacctgccccctggcaaggaccccagcaagttt
ggcatccgcaccttcaaccaccctctcaacctcaccaaggagcagctgtcccaggtggca
ctgatgaccacctcagtggacgtgctggtgtccatctgcgtgatcttcgccatgtccttc
gtcccagccagcttcgtagtcttcctcatccaggagagagtgagcaaggccaagcacatg
cagttcatcagcggcgtgcagcccctgctctactggacggccaacttcatctgggatatg
tgtaactacatcgtcccggcgacgctcgtcatcatcatcttcgtgtgcttccaacaaaag
gcctacgtgtcgtcaaccaacctgccagtgctggccctgctgctgctcctctacggctgg
tctatcactcctctgatgtacccggcgtccttcttctttaagatccccagcacggcctac
gtggtgctcacctccgtcaacatcctcatcggcatcaacggcagcatctccacctttgtc
atggagctctttggaaacaacgagattggaggtatcaatgacatcctgaagaacgttttg
ttgatatttcctcacttctgtttgggtcgaggcctcatcgacatggtgaagaaccaggcc
atggccgacgctctggaaagattcggtgagaaccgcttccgatcccctctggaatgggac
atggtgggcaagaacctgtttgccatggccgtggaaggagtggtcttcttcatcatcacc
gtcctcatccagtaccgcttctgcatcaagcccattaacctgcacaccaagctccctccg
gtaggcgaggaggacgaggatgtggccagagagaggcagaggatcgtcaacggactggga
cacggagacatcctggagctccgacagctcaccaaggtctacaagaggaagcagaagccg
gcggtggaccgcctgtgtgtgggcatccctcctggagagtgctttggcctcttgggtgtg
aacggagctggaaagaccaccaccttcaaaatgctgacaggagactccatagtcaccagt
ggagaggctttcctggccggaaaaagtatactgcgggagatagacgaggtgcaccagaac
atgggctactgccctcagtttgacgccatcaacgacctgctgacgggaagagagcacttg
gagttctacgccgtcctgcgcggcgtgcccgagaaggaagtgtgcgaagttgccgaatgg
ggcatccgtaagctgggcctagtaaagtatgtggacaaggcagcaggaagctacagcgga
ggaaacatgaggaaactctccaccgccatggccctgataggaggaccacccgtcgtgttc
ctggacgagcccaccactgggatggaccccaaagcacgcagggccttatggaactgcatc
cacagcgtcatcaaggagggacgctccgtggtgctcacctcgcacagtatggaggaatgt
gaggccctgtgcaccagaatggccattatggtcaatggcaggttccgctgcttggggagt
gttcagcacctaaagaacaggttcggagacggctacaccatcattctgcgtgtggctggg
ccggaccctgacctgccgccggtgatgaagttcattgagagtaagctgcctggcagcacc
ctgaaggagaagcacaggaacatgctgcagtaccagctgtcctcctcactcacctccctg
gcacacatcttcagcatcctggcaaagaacaaggaccttcttcggatagaggactactcc
gtgtcgcagaccacactggaccaggtttttgtgaactttgccaaggaccagagtgacgat
taccactcaaaagacaattcagtaaagcgcaaagaggcggtggtggacattaccccgctc
agctcacggcaggctgaagagaagctagccgaggagaggctaaaggagagcttggtgtga
DBGET
integrated database retrieval system
