Salmo trutta (river trout): 115205214
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Entry
115205214 CDS
T08542
Name
(RefSeq) protocadherin-18-like isoform X1
KO
K16499
protocadherin delta 2
Organism
stru
Salmo trutta (river trout)
Brite
KEGG Orthology (KO) [BR:
stru00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
stru04515
]
115205214
Cell adhesion molecules [BR:
stru04515
]
Cadherins
Protocadherins
115205214
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Cadherin
Cadherin_2
PAG
Cadherin_C_2
TMEM154
Motif
Other DBs
NCBI-GeneID:
115205214
NCBI-ProteinID:
XP_029626815
Ensembl:
ENSSTUG00000033359
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Position
13:complement(13056148..13062883)
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AA seq
1242 aa
AA seq
DB search
MGAKMNTPRGNIVFSTALLLFLVGIMQDVSGKNLKYKVYEEQKVGTVIARLKEDVAGVLS
KLPSSVSFLFRAMQRGSTPFLSVREEDGEITIGTKIDREKICEQNLNCSIEFDVITLPTE
YLQLFHVEVEVLDINDNSPQFSRAIIPIEISESASVGNRIQLDSATDPDVGDNSLYSYSL
TPNHFFKIDIRTRTDGAKYAELVVVRELDREVQSNYQLQLTASDNGVPPKSGSTLLKISI
SDSNDNSPAFDEQSYVINLMENSPLGTLLIDLNATDPDEGTNGKIVYSFSSHVSPKILET
FKINPENGQITLIKKVDYESTSSYELDIQAQDLGPNSIPGLCKIVIKVVDVNDNKPEINI
NLMTPGKEEVAYISEGAPVDTFIALVRVDDSDTGLNGDVVCRLHGHGHFRLQKTYEKNYM
ILTNVSLDREKRSEYSLTVIAEDRGSPSLSTVKHFTVQVLDENDNPPRFEKSRYEVFKSE
NNSPGAYLMTVVASDPDLGTNGQVTYTVVEALVQGSPISTYVTIDPSNGAIYALRSFDHE
DVSRIAFTVQARDGGNPALSSNATVLLTVLDDNDNPPTIQSPPLRNHTADLPLWRHASAG
QLVTIIKATDRDTGANGELSCSIVGGNEEGLFVMDARRCELRTNGSLEGVPKDVLEIRVE
VQDRGTTRLSTGALLRLSLQENMDILPPGLPTGPSQPPLDLSLIIIISLGAVCALLLVVM
VMFTTARCNREKKDPRNSYNCRVAENTYQNHPKKPSRQIHKGDITLVPTVNGTLPVRAHP
RSPSASPAPERGTMGSRQSQHSRQSLNSLVTISSNHVAENFALELAHATPPVEQVSQLLS
MLHQGQYQPRPSFRGNKYTRSYRYALNDMDKFSLKDSGRGDSDAGDSDYEAGRESPIDRL
LGEAFTELYPPDGQHRPHPQHPHAAMRLCTEECRVLGHSDQCWMPPLPSPASSDYRSNLF
IPGDDPRQARDPEQPPQSSDPAHPHAQRSNQSFSTFGKDNQEGAEEGEAEDGGEEGEDLC
GTTSLLSEMSSVFQRLLPPSLDSYVQVSETQKGGASVGGVGVPMTGSLDRRRGHLPGKPS
AAAHQQGVAAWAANTHFQNPGSSIGPSGHPHPQNGGYHTLKPSTKLSPQNNHKNQVVGHG
QHAPTPKNSPLLTALVSPTLVVPSLAPAPAPIPVPVPLPGPCGKWLPAMEEIPENFEEDE
FDSVLGQLGHLQGKRSDSRHELMDASELVAEINKLLQDVRQS
NT seq
3729 nt
NT seq
+upstream
nt +downstream
nt
atgggtgccaaaatgaatacacccagagggaatatagtattttccactgcactattatta
tttttggttggaattatgcaggacgtttctggtaagaatttgaaatataaagtttatgaa
gagcaaaaagtgggcacagtgattgcaaggctaaaggaagacgtggcgggtgttctttct
aaattaccgagttcagtgtcctttctgttccgtgctatgcagcgggggagcactccgttt
ctgtcggttcgggaggaggacggtgaaatcactatagggaccaagattgaccgggagaag
atttgtgaacagaacctcaactgttccatcgaatttgacgttatcaccctgcctactgaa
tacctccagctcttccacgtcgaggtagaagtcttggacattaacgataactcgccacag
ttctctcgtgccatcatacccattgagatctccgagagcgcatctgtgggaaaccggatc
cagctggacagcgccacggacccagacgtgggagataactccctttactcttattccctg
acaccgaatcactttttcaaaatcgacattaggaccagaaccgacggtgccaaatacgca
gagcttgttgtggtgagggagctggaccgggaggtgcagtccaactaccagttgcagctt
acggcctcggacaatggagtccccccgaagtccggctccactttgctcaagataagcatc
tcggactctaatgacaacagtccggcttttgacgagcagtcttacgttattaatctcatg
gaaaactcaccactagggactctactgattgatttaaacgccacagatccggatgagggc
acaaacggtaaaatagtttactctttcagcagtcatgtctctcccaaaatactggagacg
tttaaaatcaaccctgaaaatggtcaaatcactttgattaaaaaagtggactatgaatct
acgtcatcttatgagctggacattcaggctcaggatctgggtcccaactccatccctgga
ctttgtaaaatcgtcatcaaagtggtggacgtgaacgacaacaaaccggagatcaacatt
aacctgatgactcctggcaaggaggaggtggcctacatctcggagggcgcgccagtggac
acctttatagcactggtgcgcgtggacgacagtgacacggggctcaacggtgacgtggtg
tgccgcctgcatggccacggtcacttccggctgcagaagacctatgagaagaattacatg
atcctgaccaacgtgtctttggacagagagaagaggtcagagtacagtctgacggtcata
gctgaggaccgcggctctccaagcctctccacagtcaaacacttcactgtacaggtgttg
gatgaaaacgataacccgcctcgctttgagaagagtcgctacgaggtcttcaagtcagag
aacaactctccaggggcctacctgatgacagtggtggcgtccgaccctgacctgggcacc
aacggtcaggtgacctacacggtggtggaagctctggtccagggaagccccatctccacc
tacgtcaccatcgacccgtccaacggcgccatctacgctctacggagcttcgaccacgag
gacgtcagccgcattgccttcaccgtccaggcacgcgatggagggaaccccgccctctcc
tccaacgccaccgtcctcctgaccgtgctcgacgataacgacaatccgcccaccatccag
tccccacccctacgaaaccacaccgccgatctacctctttggagacacgcctccgccggt
cagctggtcaccatcattaaggccaccgaccgcgacaccggtgccaacggcgagctgagc
tgctccatcgtcgggggcaacgaggagggcctgtttgtgatggatgcgcggcgatgcgag
ctgcggaccaatggcagtctggaaggggttcccaaggacgtgctggagatcagggtggag
gtgcaggacaggggcaccacccgcctgtccacgggggccctgctccgcctttcccttcag
gagaacatggacatcctgcccccaggcctccccacgggcccaagccagccacctctggac
ctctccctcatcatcatcatctccctgggggccgtgtgtgccctgctgctggtggtcatg
gtgatgttcaccacggcacgctgcaacagggagaagaaggacccacgcaactcgtacaac
tgcagggtggcagagaacacgtaccaaaaccacccgaagaagccctctaggcagatccac
aagggagacatcaccctggtccccaccgtcaacggcaccctgcccgtacgggcacaccca
cgctcaccttctgcttcgcctgccccggagaggggcaccatgggcagccggcagagccaa
cacagccgccagtcgcttaacagcctagtcaccatctcctccaatcacgtcgcagagaac
tttgctctggaactggcccacgccacgccccctgtcgagcaagtctcacagcttctgtcc
atgctccatcagggccagtaccagccaagacccagtttccgtggcaacaaatacaccagg
agctacaggtatgctctaaacgacatggataagtttagtctgaaggacagtggtcgtggt
gacagcgacgctggggacagtgactacgaggcagggagagagtctcccatcgacaggctc
ctgggtgaggcctttactgagctatacccccctgacggccaacacagaccccatccacag
catccgcatgcagcgatgagactgtgcactgaggagtgtcgtgtcctgggtcattcggac
cagtgctggatgcctcccctgccatccccagcctcctctgactaccgcagcaacctcttc
atcccaggagatgacccccgccaggccagagaccccgagcagcccccacagtcctccgac
cccgctcaccctcatgcccaacgcagcaaccagagcttctccacctttggcaaggacaac
caggagggggccgaggagggagaggcagaagacgggggagaggagggggaggacctgtgt
ggaaccacctccctgctgtcagagatgagcagcgtgttccagaggctcctccccccgtcg
ctggactcctacgtccaggtcagtgagacccagaagggaggtgcgagtgtggggggtgta
ggtgtcccaatgacggggtcactggacaggaggaggggtcacttgccaggtaagcccagt
gctgcagcccaccagcaaggtgtggcagcgtgggctgccaacacccacttccagaacccc
ggatctagcatcgggccctcaggacatccacacccccagaacggcggctaccacaccctc
aaacccagcaccaaactcagcccccagaacaaccacaagaaccaggtcgttgggcacgga
cagcacgcccccacccccaagaacagccctctcctcactgccctggttagccctaccctg
gtggtaccctccctggcccctgcccctgcccccatccctgtccctgtccccctcccgggg
ccttgcggtaagtggctcccagccatggaggagatcccagagaactttgaggaggatgag
tttgactcagtgctggggcagctgggacacctgcaggggaagaggagcgacagccgccat
gagttgatggacgccagcgagctagtggctgagatcaacaaactgttacaggacgtccgg
cagagctag
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