Salmo trutta (river trout): 115205307
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Entry
115205307 CDS
T08542
Name
(RefSeq) cleavage stimulation factor subunit 2-like isoform X1
KO
K14407
cleavage stimulation factor subunit 2
Organism
stru
Salmo trutta (river trout)
Pathway
stru03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
stru00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
115205307
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
stru03019
]
115205307
Messenger RNA biogenesis [BR:
stru03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage stimulation factor (CSTF) complex
115205307
U7-dependent histone pre-mRNA processing factors
115205307
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
CSTF2_hinge
RRM_1
CSTF_C
RRM_7
RRM_10
Motif
Other DBs
NCBI-GeneID:
115205307
NCBI-ProteinID:
XP_029626985
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All DBs
Position
13:complement(15961719..15974897)
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AA seq
596 aa
AA seq
DB search
MATLAAAAVVAAAGRDPAVDRSLRSVFVGNIPYEATEEQLKDIFSEVGLVVSFRLVYDRE
TGKPKGYGFCEYQDQETALSAMRNLNGREFSGRALRVDNAASEKNKEELKSLGTGAPIIE
SPYGDNIMPDEAPESISRAVASLPPEQMFELMKQMKLCVQNSPQEARNMLLQNPQLAFAL
LQAQVVMRIVDPEIALKMLHRQTPVQPLVPNSQAGPVPVANQPIPPANAPVSQSQPMPGM
HMNGAPQMMQPPPMGGGPGPMPGQGPVGPPGNLQHSPVGSSGQAAIERPQGQGGIPPRGL
LGDGPNDPRGGTLLSVTGEVIEPSRGGGFIGAPPPHQGPPMHMNQMAGGPPLDMRPPHDM
RGPPMGEPRGMMGEPRGPPMGEPRGMMGEPRGPPMGEPRGMMGEPRGPPMGEPRGMMGEP
RGPPMGEPRGMMGEPRGPPMGEPRGLMGEPRGPPMGEPRGMMGEPRGPPMMEQRGPPMME
PRGPPMENRGRDPRAVDPRGPVSGQRVPTAQGMQGPPPHSMNTNAPPPARPGPGVPQSGG
SFSPGQSQVTSQDHEKAALIMQVLQLTPEQIAMLPPEQRQSILVLKEQILKTTGAP
NT seq
1791 nt
NT seq
+upstream
nt +downstream
nt
atggcgactttagcagctgctgctgttgttgctgccgctggcagagatcccgctgttgac
cgttcattgcgctctgtctttgtgggaaacattccatatgaggccacagaggagcaactg
aaagacattttttcagaagtcggtctcgttgtcagctttaggttggtgtatgatagggag
acaggcaagccgaagggatatggcttctgtgagtatcaggaccaggagacggccctcagt
gccatgcggaacctgaacggaagagagttcagcggccgagctctccgtgtcgacaatgct
gctagtgagaaaaacaaagaggagctcaagagtttggggacaggagcccccattattgag
tctccctacggggacaacatcatgccagacgaggctccggagtctattagcagagctgtg
gccagtttgcccccagagcagatgtttgagctcatgaaacagatgaagctgtgtgtgcaa
aacagtccccaggaggccaggaacatgctgttgcagaacccccagctggcctttgctttg
ctgcaggcccaggttgtcatgaggatcgtagaccctgagattgccctgaaaatgcttcac
cgtcaaaccccggtgcagccattagttcccaacagtcaagctggaccagtgccagtggcc
aaccagcctattcccccggccaatgctccagtctcccagtcacagcccatgccgggcatg
cacatgaacggagctcctcagatgatgcagccccctcccatgggtgggggacctgggccc
atgccaggacagggacctgtgggaccaccaggaaacctccagcactctcccgtaggatca
tctgggcaggctgctatcgagcgacctcaaggacaaggtggtatccctcccagaggcctg
cttggcgatggccccaacgaccccagaggaggaaccctgctctctgtcacaggagaggtc
atcgaacccagtcgaggaggaggcttcatcggggcccccccaccacaccaggggcccccc
atgcacatgaaccagatggctggcgggcctcctctggacatgaggccgccccatgacatg
aggggaccccccatgggtgaacccaggggcatgatgggagagcccaggggaccccccatg
ggtgaacccaggggcatgatgggagagcccaggggaccccccatgggtgaacccaggggc
atgatgggagagccccggggaccccccatgggcgaacccaggggcatgatgggagagccc
cggggaccccccatgggcgaacccaggggcatgatgggagagccccggggaccccccatg
ggcgaacccagaggcttgatgggagagccccggggaccccccatgggtgaacccagaggt
atgatgggagagccccggggaccccccatgatggaacagcggggaccccccatgatggag
cccaggggaccccccatggagaacagaggtcgggacccccgagcggtggacccccgtgga
ccagtgtcgggccagagggttcccactgcacaaggaatgcagggccccccccctcactcc
atgaatactaatgcccctccacctgcaagaccgggtcctggtgtgccacagtccggcggt
agcttcagcccagggcaaagccaggtgacctcacaggaccatgagaaggccgccttgatc
atgcaggtgctgcagctgaccccagaacagatcgccatgctgcccccagaacagaggcag
agcatcctcgtcctcaaagagcagatcctgaagaccaccggggcaccctga
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