Salmo trutta (river trout): 115205318
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Entry
115205318 CDS
T08542
Name
(RefSeq) nuclear factor NF-kappa-B p105 subunit-like isoform X1
KO
K02580
nuclear factor NF-kappa-B p105 subunit
Organism
stru
Salmo trutta (river trout)
Pathway
stru04010
MAPK signaling pathway
stru04210
Apoptosis
stru04218
Cellular senescence
stru04620
Toll-like receptor signaling pathway
stru04621
NOD-like receptor signaling pathway
stru04622
RIG-I-like receptor signaling pathway
stru04623
Cytosolic DNA-sensing pathway
stru04625
C-type lectin receptor signaling pathway
stru04920
Adipocytokine signaling pathway
stru05132
Salmonella infection
stru05168
Herpes simplex virus 1 infection
Brite
KEGG Orthology (KO) [BR:
stru00001
]
09130 Environmental Information Processing
09132 Signal transduction
04010 MAPK signaling pathway
115205318
09140 Cellular Processes
09143 Cell growth and death
04210 Apoptosis
115205318
04218 Cellular senescence
115205318
09150 Organismal Systems
09151 Immune system
04620 Toll-like receptor signaling pathway
115205318
04621 NOD-like receptor signaling pathway
115205318
04622 RIG-I-like receptor signaling pathway
115205318
04623 Cytosolic DNA-sensing pathway
115205318
04625 C-type lectin receptor signaling pathway
115205318
09152 Endocrine system
04920 Adipocytokine signaling pathway
115205318
09160 Human Diseases
09172 Infectious disease: viral
05168 Herpes simplex virus 1 infection
115205318
09171 Infectious disease: bacterial
05132 Salmonella infection
115205318
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
stru03000
]
115205318
Transcription factors [BR:
stru03000
]
Eukaryotic type
beta-Scaffold factors with minor groove contacts
RHR (Rel homology region) Rel/Ankyrin
115205318
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RHD_DNA_bind
RHD_dimer
Ank_2
Ank
Ank_3
Ank_4
Ank_5
Death
Motif
Other DBs
NCBI-GeneID:
115205318
NCBI-ProteinID:
XP_029627005
Ensembl:
ENSSTUG00000039971
LinkDB
All DBs
Position
13:16228809..16251489
Genome browser
AA seq
935 aa
AA seq
DB search
MQEINDLFNSDTMAEEEPYLPHQPYNFDIDPLWDPLNFSPMSHSNSLRTVTADGPYLQII
EQPKQRGFRFRYGCEGPSHGGLPGASSEKNRKSYPNIKICNYQGLARVVVQLVTNSKDAH
LHAHSLVGKQCDKGICIADLQPKDSSISFPNLGILHVTKKNVSKTLEDRMSEAYRMGYNC
GIVIHPEMDAFQGEFRIPRELTDHQRNLISSAASYQAKEMDLSVVRLMFTAFLPDSDGGF
SRRLDPVISDPIFDSKAPNASNLKIVRMDRTAGCVTGGEEVYLLCDKVQKDDIQVRFYED
DETGLTWEAFGDFSPTDVHRQFAIVFKTPKYRDLNLQKPTSVFVQLKRKSDNETSEPKPF
TYHPQIIDKEEVQRKRQKTLPNFQDYSGHGGAGGLYRGPGGGGPATGGGGGFFQGYSTYS
NYGTSYSPGFSPSMSGGGEGIKHAPQGRVEDSGDDSDMDDDPASGAVVGVRAKSEDASAG
ETSEERGAGVELRPGDRTGECVLEARLVDVAERQAEALFQYAVTGDVSYLLAPQRQLMTA
QDENGDTGLHLGVIHSQTDAVRSLAQVLSALPGEEVLNMRNNLYQTPLHLAVITQQKAAA
EAILLAGADVTLSDRHGNTALHLAAQQKEGGMVGFLLRHREIVELVDLPNAAGLCSLHLA
VLANSLSSLRDLLVSGGSVEVQERSCGRTALHLATEQDNISLAGCLLLEGNANVDCCTYN
GSSPLHTATGRGSVKLTALLMAAGADPHKENFEPLFFREHDCCVDEEEEEEDEGYIPGTT
PLNMAATPEVLEILNGKEYKPETHVFVPPQGDMQSLGSDTKRALCQALECPEGGWESLAH
ILGLGILNSAFRLSSSPASTLLDSYEVSGGKVKDLLEGLRTVGNCSALTVLEGALCEAEQ
APQSTTKLLERVCDLKLDGWEDSGVCDSGVELSTA
NT seq
2808 nt
NT seq
+upstream
nt +downstream
nt
atgcaggaaatcaatgacctctttaattccgacaccatggcagaagaggagccttaccta
cctcaccaaccgtacaactttgacatagatccactatgggatcctctgaatttctctccc
atgtcacactccaactcactccggacagttacagcagatggaccctacctccaaatcatt
gaacagcctaaacagcggggcttcaggtttcgttatggctgtgagggaccctctcacggc
gggctaccaggggcctctagtgagaagaacagaaagtcctatcccaatatcaagatctgt
aactaccaggggttggcacgtgtggtggtacagctggtgaccaactctaaagatgcccac
ctccatgcccacagtctggtgggcaagcagtgtgacaagggcatctgcatcgcagaccta
cagcccaaagactccagcatcagtttccccaacttgggcatcctccatgtgaccaagaag
aatgtgagtaagacactggaggaccgtatgtctgaggcttacagaatgggctacaactgt
ggtatcgtcatccaccccgagatggacgccttccagggagagttccgcatcccccgagag
ctcactgatcaccagagaaacctgatcagcagcgcagcgtcctaccaggctaaagagatg
gacctgagcgtggtgcgcctcatgttcacagccttcctcccagacagtgacgggggcttc
tcccgtagactggaccccgtcatatcagaccccatcttcgacagcaaagctccaaatgcg
tctaacctgaagatagtgcggatggatcgaacagctggctgtgtgactggaggagaggag
gtctacctgctctgtgacaaggttcagaaagatgacatccaggtgcgcttctatgaggat
gacgagacagggctgacatgggaggcctttggggacttctcccccaccgatgtccaccga
cagtttgccattgttttcaagacccccaaatacagagacctgaacctccagaaacccacc
tcggtgtttgtgcagctgaagcgtaaatcggacaatgagacgagcgagcccaagcccttc
acctaccacccgcagatcatagataaggaagaggttcagaggaagagacagaagaccctg
cctaacttccaggactacagcggccacggtggagcagggggcctgtaccgtggaccaggg
ggggggggtcccgctacagggggaggaggaggtttcttccagggctattccacctacagt
aattacggcaccagctacagccctggcttttcccctagcatgagtggtggcggggaggga
attaaacatgctccacaaggcagagtggaggacagtggtgatgacagcgacatggatgat
gacccggcctcaggggcagtggtgggggtccgagccaagtcagaggatgcctctgctggg
gagacgagtgaggagagaggggccggtgtggagctcagaccaggggacaggactggagag
tgtgtgctggaggccaggctggtggatgttgctgagaggcaggctgaagccctcttccag
tacgccgtcactggtgacgtcagctacctgctggctccacagcgccagctcatgactgct
caggacgagaacggtgacactggtctccatctgggggtgatccacagccagacagacgca
gtcaggagtctagcccaggtcctctctgccctgcctggagaggaggtcctcaacatgagg
aacaacctctaccagactcctttgcacctagcggtaataacacagcagaaggcggcagct
gaggccatcttattggctggggctgatgtcactctctctgatcgccacggaaacacagct
cttcacctggccgcccagcagaaggagggaggtatggtgggatttctactgagacacaga
gagatagtggaactagtggacctccccaacgcagcaggactgtgctccctccacctggct
gtgctggccaacagcctgtcttccctcagggacctcctggtgagcgggggcagtgtggag
gtccaggagaggagctgcggccgcacggcgctccatctggccactgagcaggacaacatc
tccctggcaggctgcctgctactggaggggaatgctaatgtggactgctgcacctacaac
ggttccagccctctccatacagccacagggcggggctctgtcaagctgaccgctctcctc
atggctgcaggtgccgatcctcacaaagaaaactttgagcccctgttcttcagagagcat
gactgctgtgtggatgaggaagaggaggaggaggacgaaggctacatcccagggacaact
cctctcaacatggctgccactcctgaggtgttggaaatcctgaatggaaaagagtacaag
ccagagacacacgtcttcgtcccccctcaaggtgacatgcagagcctgggctcagacaca
aagcgggcactatgccaggccctggagtgcccggagggtggctgggagagcctggcacac
atactgggcctgggcatcctcaacagcgccttcagactcagctcctcccccgcaagcacg
ctgctggacagctacgaggtgtctggaggaaaggtcaaggaccttttggagggactcagg
actgtagggaactgctctgctttgacagtacttgagggggcactgtgtgaagcagaacag
gctccccaaagcaccacaaaactcttagaacgtgtgtgtgatctgaagctggacggatgg
gaggacagcggagtgtgtgacagtggggtggagctctccacagcgtga
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