Salmo trutta (river trout): 115205809
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Entry
115205809 CDS
T08542
Symbol
brca2
Name
(RefSeq) breast cancer type 2 susceptibility protein isoform X1
KO
K08775
breast cancer 2 susceptibility protein
Organism
stru
Salmo trutta (river trout)
Pathway
stru03440
Homologous recombination
stru03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
stru00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
115205809 (brca2)
03460 Fanconi anemia pathway
115205809 (brca2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
stru04121
]
115205809 (brca2)
03036 Chromosome and associated proteins [BR:
stru03036
]
115205809 (brca2)
03400 DNA repair and recombination proteins [BR:
stru03400
]
115205809 (brca2)
Ubiquitin system [BR:
stru04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
BRCC complex
115205809 (brca2)
Chromosome and associated proteins [BR:
stru03036
]
Eukaryotic type
Centrosome formation proteins
Centrosome duplication proteins
Other centrosome duplication proteins
115205809 (brca2)
DNA repair and recombination proteins [BR:
stru03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
BRCA complex
115205809 (brca2)
FA (Fanconi anemia) pathway
Downstream FA components
115205809 (brca2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
BRCA-2_helical
BRCA2
BRCA-2_OB3
BRCA-2_OB1
BRCA2DBD_OB2
Tower
BRCA2_TR2
Motif
Other DBs
NCBI-GeneID:
115205809
NCBI-ProteinID:
XP_029627990
Ensembl:
ENSSTUG00000039182
LinkDB
All DBs
Position
13:43308479..43351567
Genome browser
AA seq
2829 aa
AA seq
DB search
MFDAIKDQIWEELGPLNPNWFEELTAKASSWDWGDTEKENPSTAISCGQDGSFKTPLGKC
PLDGDMFSTPKIFRQGRPQSPETLTEDALFFPDQGSSATVKMDTSPCLFGKPIDRETPSK
SYRKRLHGDSFGLLDTPKHSTIFLFPQAHSVKRISESLGAQLDPDMSWTSSLNTPVMSPT
IILTKSEERRPMCPVRIATEEQVMFVRKLFPSAKESGSTMLSPEQNDRPLCQHNGLDSHL
PGVIDISPGFQDTLPGDSGSHWKQTLPDAIEDGEIRSTMAGVLDGAEDVLSIFFSNRSLA
LQRVKTKERIKRKQSGATKEHVPTSTMEHDKVSSERAGEYQHTRETSEALESRTDMKSGD
LATSQWTPISVPDISDYDMDSFHHEGSSFTKHIIPQDGISETFCDFTGSQQPDRGSSKQT
VQVESALSRRTLPCTSQPEGSQLTGSVVESSLEHTFPRKTRTFVYCVQNPLLSVQDKYVT
QMLPASPGTAPRGENQNIKQSGTIPNEAEFNNLNKIALDGKKPQVQQKSATEENIVSQAP
TKDPDLDMSQLCRVFAQDFSQVVDYSQPCSKRADAIKNGFSASACLSAMRLRNRKLLNRL
EWGQKPEHLNSGISDEMHIPGSQFSNSANTSRMKSTVCDSSFPPYTLSDVTQTESSNVHP
SSEKSYGNQSSRGFITGNNWIISLPPEAIKKAKASLDDLIEENMTDVVTAASEVKPVLSC
VTGSRLSTEVKFISPLNVAKRSKQTSVKLNGQVQVQTPQSINVLVSSHPGSGFKMASNKK
IHFFSANLEKDKDLFEIEDEIPAVNIPEISLPDEGNMSCGLELVDGSHLPPLPYTHQRSV
DSQGPLTASQRADVSELCSLLEAADSQFEFTQFKPAKLNFYVPDGSPPRQSEKELDPDFL
TGIDFDDSFNSDVEKQSVKMATPDKKTTISHCKEICQVTTTEIKSSGASSSNSTEKPKEH
VIHRRVLYFPSYSSENIAERSFGLLTKTTNENHLLDMDTNTSGMECESKNLPKLGVGFKT
AGGNAIIVSEKCLSKARALFADFEEKNCAPKCAVKNTEQVETSPVQYRGEVDTNVDSNVT
HFHGPEKKVDLKEPRDEYIDKIKVDFIHSHKHGDGGFQTASGKGVTISAKALKKTNAVFK
DCDAMESSGCASEKLSKTSVSETGCNHFERNNCGFSTARGKRVDVSATCLLKARTLLNDC
DELENSKPGKIPSLNAKIPSRNIQQKSDCDFKKPSCKAASISAKVPFTAKTPSFDGGTSH
DVLGAKRKMLEPENSQTHAKDPLKNGSGFSTASGKRVSVSKRALLKAQALLSECNVDGED
LSKSKKKIRVDLHTIQNPTQKHSGFKTASVKEVTVSPKAHKQAKAVFNNCDSNMDSLISA
EAKQGNIDVKSADGLMNNPGESYCAFITAGGKNVHVSEKCILKAKSILNENLDNCTDSNA
IEEAWFSDGRFSLLTETHCDFSTASGKTVHMSDGALQKAKSILNECDVIENPQPENGHKV
HLEKIPTKETHEISHGSTASGEGVFISEKALQHVKSVYVHGETGNVKYSVGSNPVGSLFG
FSTASGNGLSVSEKALQEACDDTLDSDTDPQKRSEENRPLKVPTPHINVQRVPVKAVRLE
DCEVIQTIVGMACQSSSVECQAESSLLNFESLGFSGCSVTQRRYFAQETMDCTKALLEDE
DLTDHCPGTPIQANPMSSKGGFEMRSGIGKRSAEDLGMTDQPPLKRRLLTKFDRTVDCSR
RSKLTPAKSSSDGIFKDRRVFKYNVALQPNVTRPYRANQRCVDTRLNKTEPQKTTSDPTA
EDRKPVSSKTAVFVPPFRKNVKLEPQRSSGLQDKTRAPAVFVSPFRKNNRVNKEGSFKPS
EDNHSPFISEMPTKTTSVPLPEYNPITDTGSDNAKESIKEHDPQNIDRTDVGNDGGHCLP
VTLGGEDATAEESIAGQLAPDATGTLLDVVYDAECLQLARDMQDMRIRKKKRQTIRPLPG
SLYLAKTSGVARLTLREAVGGWHPVQHTHKQLYGYGVHRHVSDISSESAEAFRFVCRHFF
RREAFVEGRIQLADGGWLIPRNDGTAGKHEFHRALCDSPGVDPKLISEDWVFNHYRWVVW
KRACMERAFPALMGSLCLTPEQVLLQLKYRYDLEVDNSKRSALRKIMERDDTAVKTLVLC
VCGVVTKGHNPTRQSWSETKNKTPPESAAGSKAKSSLVGLIWLTDGWYTIKAQLDVPLTA
MLHRGRLAIGGKVLVHGAELVGSQDACSPLEAPDSLMLKIGANGTRAARWYTRLGFYSNP
SPFLLPLSSLYSNGGPVGCVDIVVLRSYPTQWMEKKSNGGFVFRAGRAEEREARRHGDAK
HRAMEILFAKIQAQFEKEEDVCGKPRGRRRTLRGRDIETLLDGEELYGAVENDPVYLEGR
LSEQQREALNSYRRCVGERRQAALQERFRQALESTQEGEGGSCHNRDVTAIWKLSVADSR
AKPGSNAVYLLNIWRPSMDLQSLLKEGCRYRAYQLSTSEGKKRAGNTSIQLTATKKTQFQ
NLQASAGWLSERFQAREAVGFRVLLNRDLKPLCGEVDLVGYVISITDRQGHSPVVYLVDG
WLDFVKVRCCSSLVQQGLEEVVKPLALVALSNLQLRAHPSSPIHSAIPGLYAGDLVSFST
NPKEPHLQEAAAQLRTLVQGQEHFFRTAEERLCNLVQGSVQCLPLPPWTPGWKADAKPDA
RTTMTPQQSVRSVGPFTPLNRVVHPPPTCSSGGDNKDPKSLKKKRGLDYLCRIPSPPPLC
PLGTMTLPLPCVSKTFNTPRRAETHRILKTPLATAPQHVHLPLEDEWVEDEELVMIDTQA
LHDDIGIDT
NT seq
8490 nt
NT seq
+upstream
nt +downstream
nt
atgtttgacgctatcaaggatcaaatatgggaagagttgggacctctgaacccaaactgg
tttgaggaactcactgctaaagcttccagttgggattggggtgatacagagaaagagaat
cccagcactgcaatatcttgtggacaagatggcagtttcaaaacaccattggggaaatgt
ccccttgatggtgatatgttctctaccccgaagattttcaggcagggaagaccacagtca
cctgagacactgacagaagatgcacttttctttcctgatcaaggatcctctgcaacagta
aaaatggacacaagcccatgcttatttggaaaaccaatagaccgcgagacccccagtaaa
tcctatagaaaaaggctgcatggagacagttttgggctgcttgacacaccgaaacactct
acgatatttttatttccacaggcacactctgtcaaacgtatatctgaaagtcttggtgca
cagttagaccctgatatgtcctggaccagttctctcaatacacctgtcatgtcgcccacc
atcattttgactaaaagtgaggagcgtaggcctatgtgcccagtaagaattgctaccgaa
gagcaggttatgtttgtgcgaaagcttttcccctcggccaaggagtctggaagcacaatg
ctgtcaccagaacagaatgatagacctctctgtcaacacaatggactggattcccacttg
cctggtgtgattgacatctcccctggctttcaagacacgttacctggtgacagtggcagc
cattggaaacagactttaccagatgctattgaggacggagaaatccgcagcacaatggcc
ggtgttctagatggagctgaggatgtcctctccatattcttcagcaacagaagtttggct
ttacaaagggtgaagaccaaggagagaatcaaaaggaagcaaagtggcgcaactaaggaa
cacgtacctacttctacaatggaacatgacaaagtatccagtgagagagcaggagaatac
caacacaccagggaaacctctgaggctcttgagtccaggactgacatgaagtctggggat
ttggcgacttctcagtggactccaataagtgtacctgacatttcagactatgatatggat
tcatttcaccatgaggggtcttcctttactaaacacataattccacaagatggcataagt
gaaacattctgtgacttcactggaagccagcagccagatcgtggctcctctaagcagact
gtccaggtggagtcagccctttccaggagaacattaccatgcaccagccagccagaggga
tctcaattgacagggtctgtagtcgaaagctctctagaacacacctttcccaggaaaaca
aggacatttgtttactgtgtccaaaatccacttctgtcagtgcaagataaatatgttact
cagatgttacctgcatcacctggaactgctcccaggggtgaaaatcagaacataaaacaa
agtggaaccataccaaatgaagctgagtttaataatcttaacaaaattgccttggatggg
aaaaagccgcaagttcagcagaaaagtgcaactgaagaaaatattgtttcacaagcacca
accaaagaccctgatcttgatatgtcacagctttgcagggtatttgcgcaagattttagc
caagtagttgactacagtcaaccatgcagcaaaagagcagatgctattaaaaatggcttc
tctgcatcagcttgtctctcagcaatgagactaaggaacagaaaactgttgaatagacta
gaatggggccagaaacctgaacatcttaactctggcatcagtgatgaaatgcatattcct
ggttctcagtttagcaactctgcaaacacgtctagaatgaagagtacagtgtgtgatagc
agcttccccccttacaccctttctgatgtcacacaaacagaatcatccaacgttcaccct
agctctgaaaaaagttatggaaatcaatcatctagagggtttataacaggtaacaactgg
attatctctttgcctccagaagcaataaagaaagcaaaagcatcattagatgacttaatt
gaggaaaatatgactgatgttgttactgctgccagtgaagtgaaacctgtgttgtcgtgt
gtgacaggaagccgactgtccacagaagtgaagttcattagtccactcaacgttgccaaa
aggtcaaagcaaaccagcgtaaaattgaatgggcaagttcaggttcagacccctcagagc
atcaatgttttggtttcctcacaccctgggtctggtttcaaaatggcctccaataagaag
atacattttttttcagcaaatctggagaaagacaaggatctgtttgagattgaggatgaa
atacctgcagtcaatattcctgagataagccttcctgatgaaggtaacatgtcatgtgga
ttggagcttgttgatggatctcatttaccacctctaccctatacacaccagaggtctgtt
gatagccaaggtccgttgacagcctcacagagagctgatgtttcagaattgtgcagtctc
ttagaagctgcagacagccaatttgaattcacacagtttaaaccagcaaagctgaacttc
tatgttccagatggtagcccccctcgtcaatctgagaaagaattggatcccgactttctc
acaggcatagatttcgatgacagtttcaactctgatgttgagaagcaatctgtgaagatg
gccacccctgacaaaaagacaactatttctcattgcaaggaaatttgccaagtaacaacc
accgaaattaaatctagtggggcatcatccagcaattcaacagagaaacccaaagaacat
gttatccacagaagagtactttactttcccagttatagctctgaaaacatagctgagcgc
tcctttggtttgttgacaaaaaccacaaacgagaaccatctgctcgatatggatacgaac
accagtggaatggagtgtgaaagcaaaaatctccccaagttgggtgtgggttttaaaacg
gctggcggaaatgctataatagtttcagaaaagtgtctgagcaaagcaagggccttgttt
gcagatttcgaggaaaaaaactgtgcacccaagtgtgcagtaaaaaatacggaacaagtt
gaaacctcacctgttcaatatagaggcgaagttgatacaaatgttgattctaatgtgaca
cattttcatggccctgaaaaaaaagtagatctgaaggaaccacgtgatgaatacattgac
aagattaaagtggactttatacattctcacaaacatggggatggtggtttccagacagcc
agtggtaaaggagtgaccatctcggcaaaggcccttaaaaaaacaaatgcggttttcaaa
gactgtgacgctatggaaagttcaggttgtgcatcagaaaagctgagcaaaacaagtgta
tcagagactggctgtaatcattttgagagaaacaattgtggctttagcactgctcgaggt
aagagagttgatgtttctgcaacatgtctactgaaggcaaggactctcctgaatgactgt
gatgaattggaaaattctaagccagggaaaatccctagcttgaatgcaaagataccaagt
cggaatattcagcagaaaagtgattgtgattttaagaaacccagttgtaaagcagcctcc
atatcagcaaaggtcccttttacagcaaaaactccatcatttgatggtggcacgtcacat
gatgttctaggggcaaagaggaaaatgcttgaaccagaaaattctcaaacccatgctaaa
gatcctttgaaaaatggatctgggttcagcactgccagtggtaagagagtgtctgtgtcc
aaaagggcgctgttgaaagcacaggctcttttgagtgaatgtaatgtagatggagaggat
ctttctaaatcaaagaaaaagatcagagtagatcttcataccattcagaatcctacacag
aagcacagtggatttaagactgctagtgtcaaagaagttaccgtatcacctaaggcccat
aagcaagcaaaggctgttttcaacaactgtgattccaatatggacagcttaatcagtgct
gaagcaaagcaagggaatatagacgtaaagtctgctgatggtctgatgaacaatccaggg
gaaagctattgtgccttcatcacagctggtggaaagaatgtgcatgtatctgaaaaatgt
attttgaaggcgaagagcattctgaatgaaaaccttgataactgcacagactcaaatgcc
attgaggaggcttggttttcagatggtagattttcattactcactgaaactcactgtgat
ttcagcactgccagtggcaagactgtgcatatgtctgatggagcactccagaaagcaaag
tctattctgaacgaatgtgatgtaattgaaaatccacaacctgagaatggccacaaagtg
catctggaaaagattccaacaaaggaaacgcatgaaatctctcatggtagcacagccagt
ggggaaggggtgtttatttcagaaaaggctcttcaacatgtgaagtctgtgtacgttcat
ggtgagactggtaatgtaaaatattcagttggcagtaatccagtaggaagcctttttggt
tttagcacagccagtggtaacggactgtctgtttcagagaaggcacttcaagaagcgtgt
gatgatacccttgacagtgatactgaccctcaaaaaagatctgaagaaaataggccactg
aaggtccctactccccatattaatgttcagcgtgtaccggtcaaagcagttcgactggag
gactgcgaagtgatccagaccattgttggaatggcatgtcagtcttcatctgtagaatgt
caagcggagtcttccttgttaaattttgaatcccttggattcagtggctgctctgtgacc
cagaggaggtactttgcccaggagaccatggattgtaccaaggctcttttagaggacgaa
gacttgactgatcattgtcctggaacaccaatccaagctaaccccatgtcctccaagggg
ggttttgagatgagaagtggaattgggaaaaggtcggcagaggatttagggatgacagac
cagcctcctctgaaaagaagactcttgaccaaattcgacagaactgtggattgtagtaga
cggtcaaaactcactccagctaaaagcagttcagatggtatatttaaagacaggagagtc
ttcaaatataatgtggctcttcaacctaatgtcaccaggccatatcgcgctaatcagaga
tgtgtagacacaaggctgaataagaccgagccacagaagacaacgtcagatccaaccgcc
gaagaccgtaaaccagttagttccaagaccgctgtatttgtccccccattccggaagaat
gtcaagcttgagccacagaggagcagtggtcttcaggacaagactagagcgcctgctgtg
tttgtttccccgtttcgaaaaaacaaccgcgtaaacaaggagggttcctttaagccttca
gaagataatcattctcccttcatctctgaaatgcctacgaagaccacatctgttccactt
cctgagtacaaccccatcactgacactggtagtgataacgcaaaggagtccattaaggaa
catgacccacaaaatattgacagaacggacgtaggcaatgatggtggccattgccttcct
gtcaccctaggaggagaggatgccactgcagaggagtctattgcaggtcagctagcccct
gatgccaccggtacccttctagacgttgtttatgatgcagagtgcttgcagctggcccga
gacatgcaggacatgaggatcaggaagaagaagcggcagaccattagacctctccctggt
agcctgtacctggccaagacatctggggtggccaggctgaccctcagggaggctgttgga
ggttggcaccctgtacaacacacacacaaacagctgtatggctacggagtgcaccggcat
gtttcggatatcagcagcgagagtgccgaggcgttccgctttgtctgccgacacttcttc
agacgcgaggcgtttgtagaagggcgcattcagctggccgacggggggtggctcatccct
cgcaatgatggaactgcagggaaacatgagttccacagagcgttgtgtgacagccctggc
gtggaccccaagctgatcagtgaggactgggtgttcaaccactaccgctgggtggtgtgg
aaacgggcttgcatggagagggcattcccagcgctgatgggcagcctctgtctcacacca
gaacaggtgctcctacaactgaaatacaggtacgacttggaggtggacaacagcaagagg
tcagctctaaggaagatcatggagagagacgacacggcagtcaagaccctggtgctttgt
gtatgtggtgttgtcaccaaaggccataatccaacaaggcagagctggagtgagaccaag
aacaaaaccccacctgagagcgccgcagggtctaaagcgaagtcgtcccttgtaggcttg
atctggctgacggatggctggtacaccatcaaggcccagctggacgtaccactgaccgcc
atgctccaccggggccgcctggcgattggggggaaggtgctggtccacggggccgagctg
gtgggatctcaggatgcctgctccccgctagaggctcccgactccctcatgctgaagatt
ggggccaacggcaccagagcggcgcgttggtacaccaggctagggttctacagcaaccct
agtccgttcctcctccccctctcctccctctacagcaacggaggccccgtgggctgtgtg
gacattgtggtgctgaggagctaccctacccagtggatggagaagaagtcgaacggaggg
tttgtgttccgcgcaggccgtgcagaggagagggaggcgcggcgtcatggcgacgccaaa
cacagagccatggagatcctgttcgccaagatccaggcccagtttgagaaggaggaggac
gtttgcggtaaacccagaggccggagacggaccctgcgtggtcgagacattgagacactg
ctggacggggaggagctgtacggcgcagtggagaatgacccagtatatctggagggccgt
ctgagtgagcagcaacgggaggcgttgaacagctacaggcgttgtgttggtgagaggagg
caagcggcactgcaggagcggttccgccaggctctggaaagcacccaggagggcgagggc
gggagctgtcacaaccgagacgtgaccgccatctggaagctcagcgttgctgactccagg
gccaagccgggcagcaatgcagtgtacctgttgaatatctggcgcccctccatggatctg
cagtccttgctgaaggagggctgtcgatacagggcctaccaactatccacgtcggagggc
aagaaacgagccggtaacacctccattcagctcaccgccaccaagaaaacccagttccag
aatttacaggcttctgcagggtggttgtctgagcgttttcaagcccgagaggcggtcggt
tttcgcgttctcctgaaccgggacttaaagccgctctgtggagaggtggatctggtgggc
tacgtcatctccatcacagacagacaaggtcactctccagtggtgtatctagtggatggc
tggctggactttgtcaaggtccgctgctgcagcagtctggtccagcagggcttggaggag
gtggtcaagcctctggctctggtggccctcagtaaccttcagctcagagcccatccctcc
tcccccatccacagcgccatccctggcctatacgctggagatctggtctcgttttccacc
aaccctaaggagccacatctacaggaggctgccgctcaactcaggacccttgtccagggc
caggaacacttcttcaggactgcagaggagaggttatgtaacttagtccaggggtctgtc
cagtgtcttcctctgccgccatggactccaggctggaaagcagatgccaaaccagatgca
aggactactatgacaccccagcagtcagttcgaagcgttggccccttcacccccctgaac
agggtcgtccaccctccacccacctgctcctcagggggggacaacaaagaccccaagagc
ctgaaaaaaaagaggggcctggactacctgtgtcgcatcccctctccccctccactctgc
cccttgggcaccatgaccttacccttgccgtgcgtcagcaagaccttcaacacccctcgc
agggccgagacccaccggatcctaaagacacctctggccaccgctccacagcatgtccac
ctgcccctagaggatgagtgggtggaggatgaagagctggtcatgattgacactcaggcc
ctacacgatgacatagggatagacacgtga
DBGET
integrated database retrieval system
