Salmo trutta (river trout): 115205890
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Entry
115205890 CDS
T08542
Name
(RefSeq) rho guanine nucleotide exchange factor 12-like isoform X1
KO
K07532
Rho guanine nucleotide exchange factor 12
Organism
stru
Salmo trutta (river trout)
Pathway
stru04270
Vascular smooth muscle contraction
stru04625
C-type lectin receptor signaling pathway
stru04810
Regulation of actin cytoskeleton
Brite
KEGG Orthology (KO) [BR:
stru00001
]
09140 Cellular Processes
09142 Cell motility
04810 Regulation of actin cytoskeleton
115205890
09150 Organismal Systems
09151 Immune system
04625 C-type lectin receptor signaling pathway
115205890
09153 Circulatory system
04270 Vascular smooth muscle contraction
115205890
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
stru04131
]
115205890
Membrane trafficking [BR:
stru04131
]
Others
Rho GTPase associated proteins
Rho guanine nucleotide exchange factors (GEFs)
115205890
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RGS-like
PH_16
RhoGEF
PDZ
PDZ_6
PDZ_2
SOS1_NGEF_PH
PH
Motif
Other DBs
NCBI-GeneID:
115205890
NCBI-ProteinID:
XP_029628164
Ensembl:
ENSSTUG00000016313
LinkDB
All DBs
Position
13:48016067..48096982
Genome browser
AA seq
1468 aa
AA seq
DB search
MSDTQSSITDRFPNKANRSSSILSKDHPPDKKPKSDKPAVSASHEFDPTDVLVQKSDCVL
AEGKPESCGLVQRCVIIQKDENGFGLTVSGDNPVFVQLVKEDGAAERAGVQTGDRIIKVN
GTLVTHSNHVEVVKLIKSGSYVALTVLGRPPGLPQIPLLEGEAKLVFLGAQTGSSSVTSP
NSPGQPMGERPYSPHDCITSPLPIWEENNSVHNQRVHILQKMLSKKQEDLQAMKEEYSRN
PTPKLLKDIQEANKHIPQMQGQLSKAAGGAQDALRLGDGDDGSMVDMDHTPSSSSNDLSW
SSSMKAPVLRGFASASPESLCQRDVLSYHSPKSTPRDSFNSCHSPDPEDTPDLDSLSPST
VSSPSSCFVSQIIGAEDDYFGSDQEQVNGQCSCFQSMELLKSRPAHLAAFLHHVVSQFDP
APLLCYLYADLCKQTNSKETRRVFMDFHNFFIDRGANLKVAVPESLSSDLDRRRTELIPE
ELNRQYIQMVQDTQLPDIQRNLEDFRQKRSMGLTLAEGELARLDTGRVRDRVALERERAC
AENIITKMEDVLLTTQSTEEEKCTTMQYVILTYMKHLGVKVKEPRGLESKWVRINFLPKI
KKSIKTEKEGGEEKVKRTRFPSILGPPRRPSRVDPTSVGKAMDINKPRPQKQLSQPSLGA
LEHLEAGRLRASQSSEGSELIHSSSTNATSPTNSTTNNNASDGGSRDSEFVGTPNSAFPK
LSEGLGDLDSLEYTPNTHFDYSLSPYSLDQLQEEDRESGILEGTPKAIRRLDGLGSTDVQ
SEDDQGGTDSEHDPLNWQQLVGREVLAGLQPHEIKRQEVINELFYTERAHLRMLKVLDNI
FYQKLTREGILPAADIKNIFTNLEDIVQLHVWISEQMVTIRKRNETSVIDQIGDDLLSWF
SRGEEEKIKQAVGTFCSNQPFALELIKSRQKKDSRFTSFMQEAESNRLCRRLQLKDIIPV
EMQRLTKYPLLLENIAKYTDDTVEKDKVKKAGDCCRKILNHVNQAVKESENKQRLEDYQR
RLDLSSLKQTENPMISELKNLDLTKKKMVHEGPLSWKVNKDKTIELYTLLLEDILVLLQK
QDERLILKCHSKNLSGTADTKHIFSPIIKLNAVLVRSVATDNKSFFVLSMSDNGAQIYEL
MAQTVSEQRMWQRHITQRADVMKVKPNSVIPLPQTDGERDGVEIITAGIAQLSKDPDRIS
SGSSQSIEGCAASGGEMQTSLPDANPFEGLKPEEEEPNREEGLYGDPDLADRLPFRMAVD
GLSDSDGVCFSPSRADDALKTLSALKQVLVTQLMSQEDGEGAGRSSSGGGRLLRTTSLRT
PVDSRARVAVQNGSGRCTQASHPEDPAQDLVSGDTGFFESPEDYAGYLVLEGYGGSGESS
TDDDLQATGKQLSASRGCGAGDSGISLRFSSASQAGSISSFSRQVLSHIRNLQTNLNHLK
EVEAKYHSLLRQRPARSSTDMDDNKDKR
NT seq
4407 nt
NT seq
+upstream
nt +downstream
nt
atgagcgacacacagtccagtatcactgataggtttcccaataaagcaaacagaagcagt
agcattctcagtaaagaccacccccctgacaagaaacccaaaagtgataaaccggcagtc
tccgcttcacatgagtttgaccctacagacgttctggtgcagaagagtgactgtgttcta
gcggagggaaagcccgagtcctgtgggcttgtccagcgatgtgtgatcattcagaaagat
gagaatggctttgggctgacggtgagcggagacaaccctgtgtttgtgcagctcgtcaaa
gaggatggcgctgcagagcgtgcaggtgtacagacaggtgaccggatcatcaaggtgaac
gggaccctagtaacacattcaaaccacgtggaagtagtaaagctcataaaatcgggctcc
tatgtggccctcacagtgttggggcgaccccctgggttgccccagatccccctgttggag
ggtgaggctaagctggtattcctgggggcccagacagggtcgtcctctgtcacctctcca
aactcccctggacagccaatgggggagcgcccatacagcccccatgactgcatcacctct
cctctaccgatatgggaagaaaacaacagcgtacacaaccaaagggtgcacatcctgcag
aagatgttgtccaaaaagcaagaagatttgcaggcaatgaaggaggagtacagcaggaat
ccgacgcccaaactactgaaggacatccaggaagccaataagcacattccacagatgcag
gggcagcttagtaaggccgctgggggagcacaggatgccctgcgattgggtgatggagat
gatggaagcatggtggacatggaccacacaccttcctccagtagcaatgacctctcatgg
agtagcagtatgaaggcccctgttctccgcggttttgcatccgcctccccggagagcctg
tgccaaagagacgtgttgtcctaccacagcccaaagagcacgccccgagacagcttcaac
tcctgccactcccctgacccagaagacactccagacctggactccctgtccccctccact
gtcagcagcccctcctcatgcttcgtctcccagatcatcggagctgaggacgactacttt
ggctctgatcaggaacaggtcaatggccagtgcagctgtttccagagcatggagctgctc
aagtccagacctgcccacctggcagcgttcctgcatcatgtcgtctcccagtttgaccct
gcaccgctgctctgctacctctacgctgacctgtgcaagcagaccaactccaaagaaacc
agacgggtgttcatggacttccacaacttcttcatcgaccggggagctaatttaaaagtg
gctgttcccgagtccctatcctctgaccttgaccggaggaggacggagctaatccctgag
gagctgaacagacagtacatccagatggtgcaggacacccagctccctgacatccagagg
aacctggaggacttcaggcagaagcgcagtatgggcctaaccctggcggagggggaactg
gcccggctggacacggggcgcgtcagagaccgggtagcactggagagagaacgcgcttgt
gctgaaaacatcatcaccaagatggaggatgttctgttgacaactcaatccacagaggag
gagaaatgcactactatgcagtatgtcatcctcacgtacatgaagcaccttggcgtgaaa
gtcaaagagccacgcggcctagagtccaaatgggtccgcatcaacttcctccccaagatc
aagaagagcatcaagaccgagaaggagggaggggaggagaaggtgaaacgaaccaggttt
cccagcatcctcgggcctcctcgccggcccagccgcgtcgaccccacgtccgttggcaag
gccatggacatcaacaagccacggccccagaagcagctgtcccagcccagcctaggggcc
ctggagcacctggaggcgggtcgcttgagggccagtcagtccagcgagggctcagagctc
atacattcctcctcgaccaacgccacctcgccaaccaacagcaccaccaacaacaacgcc
tctgacggaggcagcagagactctgagtttgttgggacccctaactctgccttccccaaa
ctgagtgagggtcttggagacctggacagtctagagtacactccaaacacacactttgac
tacagcctgagcccctatagcctggaccagctacaggaggaggacagggagagcggaatt
cttgaaggaacacccaaggctatcagaaggttggatggccttggttctacagatgtgcag
agtgaagacgaccaaggaggcactgactctgagcacgaccccctcaactggcagcagctg
gtgggacgtgaggtcctggccggactccagccccacgagatcaagagacaggaagtcatt
aatgagctgttctacactgagagggcccacctgcggatgctcaaagtgctggacaacatc
ttctaccagaagctcaccagagagggcatactgcctgctgccgacatcaagaacatcttc
accaacctggaggacattgttcaactgcatgtttggatatctgagcaaatggtaacaatt
cggaaaagaaacgagacgtccgtaatcgaccaaataggagacgacttgctgtcctggttc
agcaggggcgaggaggagaagatcaagcaggcagtgggcacgttctgcagcaaccagccc
ttcgctctggagctcatcaagagcaggcagaagaaggactcgcgcttcacctccttcatg
caggaagctgagagtaaccgactgtgtcgaagactccaactgaaggacatcattcctgtg
gagatgcagaggctcaccaagtaccctctcctactggagaacatcgccaagtacacagat
gacacagtggagaaagataaggtaaagaaggcgggcgactgctgcaggaagatcctcaat
cacgtcaaccaagcagtgaaggaatctgaaaacaagcagaggctggaggactaccagagg
cggctagacctctcgtctctgaagcagacagagaaccccatgatttcagagctcaagaac
ctggacctgaccaagaagaagatggtccatgagggaccactgtcatggaaggtcaacaag
gacaagactattgagctgtacaccctgctcctggaggacatcctggtgctgctgcagaag
caggacgagcggctcatcctcaagtgccacagcaaaaacctgtctggcaccgccgacacc
aagcacatcttcagccccatcatcaagctcaacgcggtgctggtgcgctctgtggccaca
gacaacaagtcattctttgttctctcaatgtcggacaacggggcccaaatctacgagctg
atggcccagaccgtatcagagcagagaatgtggcagcggcatatcacccagagagcggac
gtcatgaaagtgaagccgaacagcgtcatccccttacctcaaacagatggagagagagac
ggtgtggagatcatcactgcaggcatagcccaactcagtaaggacccggaccgcatctcc
tctggaagcagccagtctatagagggctgcgctgcctctggaggcgagatgcagacctct
ctcccagatgccaacccatttgaaggactcaagcccgaagaggaggagcccaaccgggag
gaggggctttacggggacccggaccttgcagataggctgcccttccgcatggccgtagac
gggctcagcgactcggacggtgtgtgcttcagtccttctagagctgacgatgctttaaag
acattgtcagcgctgaagcaggtccttgtgacccagctcatgtcacaggaggacggcgaa
ggcgccgggcgctcctcctcggggggcgggcgtcttctcaggaccacgtccctgaggacc
cccgtggacagccgggcccgggtggcggttcagaacggctcagggaggtgcacccaggca
agccaccccgaggacccggctcaggacctggtgtctggggacacgggcttctttgagtcc
cctgaggattatgcagggtacctggtcttggagggctacgggggctcgggggagagcagc
acggacgacgacctccaggccacggggaagcagctgagcgcctcgcggggctgcggggca
ggagactctgggatcagcctaaggttttcctctgcctcacaggcaggcagcatctccagc
ttcagccgacaggtcctgtcccacatccgcaacctgcagaccaacctcaaccacctcaag
gaggtagaggccaagtatcacagtctactacgccaaaggccggccaggtcatcgacagac
atggacgataacaaagataagagatag
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integrated database retrieval system
