Salmo trutta (river trout): 115205956
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Entry
115205956 CDS
T08542
Name
(RefSeq) neuronal PAS domain-containing protein 1-like isoform X1
KO
K09098
neuronal PAS domain-containing protein 1/3
Organism
stru
Salmo trutta (river trout)
Brite
KEGG Orthology (KO) [BR:
stru00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
stru03000
]
115205956
Transcription factors [BR:
stru03000
]
Eukaryotic type
Basic helix-loop-helix (bHLH)
Factors with PAS domain
115205956
BRITE hierarchy
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Gene cluster
GFIT
Motif
Pfam:
PAS_3
bHLH_HIF1A
PAS
PAS_11
PAS_4
PAS_9
HLH
Motif
Other DBs
NCBI-GeneID:
115205956
NCBI-ProteinID:
XP_029628268
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Position
13:50493934..50527307
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AA seq
783 aa
AA seq
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MATMPFVSEGKCVSVEWDFLQGLLAKPPTLPCLQNLRKEKSRNAARSRRGKENFEFFELA
KMLPLPGAITSQLDKASVIRLTISYLHMRTFASQGDPPWCPLLEGENHCSKVRRSSHSLA
TDMFEQHLGAHLLQSLDGFVFVVSSEGRFLYISETVSIYLGLSQVELTGSSVFDYIHPAD
HVEMAERLGIRPHLRAEAGCHVAPESASSSASTSSLAGTPEPAPSSPLSHGNEPPDRGFF
IRMKSTLTKRGLHVKSSGYKVRVIHVTGRIRCRPAMVPGSARSVRRPMGLVALAHTLPPS
TLNEVRMESQMFVFRVNMDLQVTYCENRISEYMDLSPAEVVGHTCYHFIHVEDLDNIRQS
HEDLLRKGQVVTGYYRWLQRRGGYLWVQSCATVSINHKAPHERNVIWVNYVISRTELPDT
PLDLLQLPESLRAERLKASSSPLEHSPQTRGPEPMKSSVCKGDPDSKLREIYNPGVQSGD
RRKRPLRSDSEGAPAETRRRLEELRQRGRSVSASSDLGSESEGEARAWEQGGDSARVKRE
EGPSKRGGETPMRGERGGGVHNGRAVIQHLKSVVSSPLSGHANIKTEHEALAAGGRWTHM
HTSSHIQPPPSHTHTPCGSLNGDSPLTPIPDSSSSSEAPPNGIFTPPSPAMSPPMSGSSP
LPCEERGMLSGGRGGGPDFELLHRLAAGGAAGRVLFHPLALGPQGPQSLYAPSTIRYAPP
ELPHSHPGAEGLRSDHHKGPPAFFPHLQRLAGLPSFSGFSASDNPFNPFCMNGLRGAAGS
EED
NT seq
2352 nt
NT seq
+upstream
nt +downstream
nt
atggccaccatgccgttcgtcagcgagggaaagtgcgtgagcgtggagtgggacttccta
cagggactactggccaaaccccccaccctgccctgtttgcagaacctgcggaaggagaag
tctcgtaatgctgctcgttcccgtcgcggtaaggagaactttgagttctttgagctggcc
aagatgctccctctccccggggccatcaccagccagctggacaaggcctcggtcatccgc
ctcaccatcagctacttgcacatgcgcaccttcgccagccagggagacccgccctggtgc
cccctgctggaaggagagaaccactgcagcaaagtgcggcgctcctcccattctctggcc
actgacatgttcgaacagcacctgggagcacacctgttacagtctctggacggctttgtg
tttgtggtaagctcagagggacgcttcctctacatatcagagactgtttccatctacctg
ggcctctcacaggtggagttgacaggcagcagtgtgtttgactacatccacccagcggac
cacgtggagatggcagagcgtctgggcatcaggccccacctgagggccgaggctggctgc
cacgtggcccccgagagcgcctccagctctgcctccacatcctccctggccgggaccccc
gagcctgccccctcaagcccactctctcatgggaatgaacctcctgaccgaggcttcttc
atccgtatgaagtccaccctcaccaagagaggcctccacgtcaagtcctcgggctacaag
gtcagagtgatccatgtgaccgggcgaatccgctgtcgccctgccatggtgccaggctcc
gcccgctcggtgcgtcggccaatgggcttggtggcccttgcgcacacgctcccgccctcc
acgctgaacgaggtgcgcatggagagccagatgtttgtcttccgggtcaacatggatttg
caggtcacctactgcgagaacaggatctcagagtacatggacctgagcccggcagaggtg
gtgggccacacctgctaccacttcatccatgtagaagacctggataacatcagacagagc
catgaggacttgttgcggaagggtcaggtggtgaccgggtactaccgttggctccagagg
agagggggttatctgtgggtccagtcctgtgccaccgtctccatcaaccacaaagccccc
cacgaacgcaacgtcatctgggtcaactacgtcatcagtcggacagagctcccagacact
cccctggatctgctgcagctcccagagagtctgagggctgagcgtctgaaagccagctcc
tcccctttggaacactcaccacaaacccggggcccagagccaatgaaaagctctgtgtgt
aaaggtgaccctgactcaaaactgagagagatctataatcccggtgtccaatcaggggac
aggaggaagcgtccgctgcgatctgactctgagggtgctcccgcggaaacgcggcgtcgc
ctggaagagctccgccagagagggcggagtgtgtcagcctcctcagacctgggcagcgag
agcgagggagaggcgagagcgtgggagcaggggggagacagcgcgagggtcaaacgagag
gaggggccttcgaaacgaggcggggagacccccatgaggggcgagaggggcggcggggtg
cacaacggccgtgcggtaatccagcacctgaagagtgtagtgtcctcgcctctctctggc
cacgccaacatcaagactgaacatgaggcactggccgcagggggtcgctggacacacatg
cacacctcctcacacatacaacccccaccctcacacacacacacaccctgcggcagcctg
aacggcgacagtcccctcacccctatcccagactcctcctccagcagtgaagccccaccc
aatggtattttcaccccgccctcccccgccatgtcccctcccatgtccggctcctcccct
ctaccatgtgaggagcggggaatgttgtctggaggcagggggggcgggcctgactttgag
ctgttgcatagactggcagcggggggtgctgcaggacgtgtgctgtttcaccccctggcc
ctcggcccccaggggccacagagcctgtacgcccccagtaccatccgctatgcgccccca
gagctgccccactctcaccccggtgctgaggggctgcgctccgaccaccacaagggtccc
ccagccttcttccctcacctccagaggctggccggcttgccctccttcagtgggttctcc
gcctcggacaatcccttcaaccccttctgtatgaacggactgaggggggccgcagggtct
gaggaggactga
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