Salmo trutta (river trout): 115206015
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Entry
115206015 CDS
T08542
Name
(RefSeq) trinucleotide repeat-containing gene 6C protein-like
KO
K18412
trinucleotide repeat-containing gene 6 protein
Organism
stru
Salmo trutta (river trout)
Brite
KEGG Orthology (KO) [BR:
stru00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
stru03019
]
115206015
03036 Chromosome and associated proteins [BR:
stru03036
]
115206015
Messenger RNA biogenesis [BR:
stru03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
115206015
Chromosome and associated proteins [BR:
stru03036
]
Eukaryotic type
Gene silencing
piRNA pathway
115206015
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TNRC6-PABC_bdg
M_domain
UBA_7
UBA
RRM_1
RRM_occluded
UBA_NBR1_C
Sigma54_CBD
THOC7
Motif
Other DBs
NCBI-GeneID:
115206015
NCBI-ProteinID:
XP_029628399
Ensembl:
ENSSTUG00000012024
LinkDB
All DBs
Position
1:67760202..67837716
Genome browser
AA seq
1965 aa
AA seq
DB search
MEEKKKRKQEEKKKKEAAQKKVTEQKTKVPDSAKPGPTPPPPPANPSATPSVPPTSGSNG
KRAPSSAQQQSQPSPAQQRYPPREIPPRFRQQEHKQLLKRGQPLPPGTLPTVPGRPEPDS
SQKSSGASHTELPPQSGPGAHYENPHWGHQPANRSATSASASANHSGWETVIIDESDTEA
WPSISRSSQSLSQGPAGGCPSDTDPVGPASSSSMSTATGANGQTGHFPANYPSSKGASSG
PGSSANHPGAGMVGMASSQGAANRGWGSGPGPSPHGPPQSSSVGGGEGKSDGPMGGGGRG
WGSSSSTNFNLNLNPNANPSAWPVLGHDGGGGAGGSSSGGANPNQPPSQPPPNLCNPPGT
SPAQGNSNRGGTMVGGTNGNLPVGGGSTWGESSEPHPSSSTNVSFSSEPQNLNTDGPNHT
SKQQEPPIHSVSGWSGPSGGMGSLGQPPPGASQLVNGEDGSSVWGNNGDSKSVASSAEPS
GWDSGAGGWGSHGSSGGTSGGWGGQNSGDAWGKQHSGEGQGGWDAPSSPPQQPSSWSTRA
PSTTAPSEGSSEGMDGAGHSRRQDRSSRDEPAPLLPAPDLDPRVLCNTGWGQTPVRQHTS
WDMEEAARTQRKADAAGTDSWGGSGPNTPTEPAQGPSGHGPLHRADLKSEGPGPGPQAAP
CWGASMPPASQPGSGWGEQPSSKNPPNGPGGWGNPPPGGPGPGPNMPKAGNQSWGAPEEK
SPSWDDPHGKAPKPQGWGDGPKPPHSGWGNSAGGGGNGGGGGDWREPADGKKNSPTTNPP
WEGEGAGGWKESNRGWGKPGPGMGGNVGGGWGEPAMAQQRPSGPAQGWGGKPQESSNGNS
GGVRGGSMGGAGGGEGSMGSWGGPGPVKPSVSGREGNGGGGSKQDPSGGEPTGWEEPSPP
SIRRKMEIDDGTSAWGDPGAYNKTVNLWDKNNPGGGGPPQGRPPGNAPGNAPACPPGNNN
NHPHPPHHPPHHPHAYHGPPPPLQSHGGHNPQGPGQNSGPMDPAMPHQAAPPPHSRPPLM
GPGWGEPSSAHPKLEPSWGEPAPPPVSVDNGTSAWGKPTGSHGGWGVGDNSPQPYRRGNP
PLGSAPCKPAPKSMQDCWGGGGGGGGEDMGLSGGQWDPDDGDMWSSQASQESNSWGNRPR
KGPPKGKIPGKQEEAWIMNRLIKQLTDMGFPRDPAEEALKRNNMNLDQAMSALLEKKTEL
DRRGMGMSDYNNCLINKGPMGCRPPLHSKESSSDRSPFLDKDGVGSLVEDVHTSSPFMPC
SPGPLSLKLPSLPSTALPLSSQGLGGPQGLAMQNLNNRQMQSGMLGSSGAAQARAMQQPP
PQPSVPPLGSSQPSLRAQVPQFLSPQVQAQLLQFAAKNIGLNPALLTSPINPQHMTLLNQ
LYQLQLAYQRLQIQQQMLQAQRNVSAPIRQQEQHVARTINNMQQQIQQHQRQLAQALLMK
QQQTLGSLSSSGLHHGQGKSALDLFPGHPQAPGLPDLQTKEQQSSPNSYSPYPLSGLNPN
MNVTGMEVGGLSMKELPQPQSRLSQWTHPNSMDSLSGGSSSLEPNLNKHGSNLGPPGKPP
QMEDGYSPYGMMPGSESPTNPLVPPDSWSQGKSPNDKMVNGTNITWPPEFCPGVPWKGLQ
NIDPENDPNMTPGSVPSGPTINTNIQDVNRYLQRDRSGGSSPTSSQNEALPPSTDWPVSA
YSSSFSLSSPETDDPGKLSDMKSTWSPGPISHPSQVSLSHELWKVPQGPRSNTAAPTRPP
PGLTNPTKHSSTWGGNSLGLAQGWSSSYSSATTWSTDSSNRTSSWLVLRNLTPQIDGSTL
RTLCMQHGPLITFHLNLTQGNALVRYSSKEEAAKAQKSLHMCVLGNTTILAEFAGEEEVQ
RFFAQGQQLASTTSWQADPGVNQTRMGSSGPRSSHPIGHPHWNSGGSSGGMGGGGAKTGG
DLLWGGVPQYSSLWGPPSGEEGRVMGSPTPINTLLPGDLLSGESM
NT seq
5898 nt
NT seq
+upstream
nt +downstream
nt
atggaagaaaagaaaaagagaaagcaagaagaaaagaaaaagaaggaagctgctcagaaa
aaggtcactgaacagaaaaccaaagtgccagactcagccaagcccggccccacccctcct
cctccccccgccaaccccagtgccaccccgtctgtgccccccaccagtggcagtaatggc
aagcgcgccccttccagtgcccagcagcagtcccagccctcgcccgcccaacagcgttac
ccgccaagagagatccctccgcgcttccgccagcaggagcacaagcagctgctgaagagg
ggtcagccgctgccccctgggacccttccaactgtaccaggacgccccgaacctgactcg
agtcagaaatcctctggtgcatcgcacacagagctgcccccacagagtggcccgggagcc
cattatgagaatccccactggggacatcagccagccaatcggagtgccacttccgcctca
gcgtcggccaatcacagtggctgggaaacagtgatcatcgacgagagtgacaccgaggcc
tggccctccatttcccgcagcagccagagcctgagccagggccctgcaggaggatgcccc
tcggacactgaccctgttggtccggccagcagcagcagtatgagcacggccacaggggcc
aacggccagacaggccactttcctgccaactaccccagcagcaaaggagccagctctggg
cccggcagctcagccaatcaccccggggctggcatggtcggcatggcctccagccaagga
gcagccaatcggggctggggatctggtcccggtccctccccccacggccctcctcagtcc
tcctctgtcgggggtggggaggggaagagtgatggcccaatgggaggaggaggcaggggt
tggggctcctcttcctccaccaactttaacttgaacctgaaccccaatgccaacccctcg
gcctggcccgttctggggcacgacgggggcggaggagcgggaggaagcagctcaggggga
gccaaccccaatcaacccccttctcaaccccctccaaacctctgcaacccgccaggcacc
tctcccgcccaggggaacagcaacagaggaggaaccatggtgggcggcaccaacggcaac
cttccggtagggggaggcagcacctggggagaatcatctgagccccacccatcctcgtcc
acgaatgtgtcttttagctcagaacctcagaaccttaacactgacggaccaaatcatact
agcaagcaacaggagccccctatccacagcgtgtccggctggagtggcccctccggaggc
atgggctccctgggccagcctcctcctggagcttcccagctggtcaatggagaggatggc
agctccgtctggggcaacaatggagactccaagtcagtcgcctcctccgcggagccttcg
ggctgggactctggggccgggggctgggggagccatggaagcagtggtggaacctctgga
ggctggggaggccagaacagcggagatgcctgggggaagcagcattctggcgagggccag
gggggctgggacgcccccagctctcctccccagcagcccagctcctggagcacccgagcc
cctagcaccacggcgcccagcgagggcagcagtgagggcatggacggagcgggacactcc
cgccgacaggaccggtcgtccagggatgagcctgcccccctgctcccagcccctgacctg
gaccccagggtgctgtgcaacacaggctggggccagacccccgtccgccagcacacgtcc
tgggacatggaggaggcggcacgcacccaacgaaaggcagatgctgccgggacggactct
tggggaggctccggccccaacactcccaccgagccagcccaagggccctccggccacggc
ccccttcatcgggctgaccttaagagcgagggtcccgggcctggtcctcaggctgcccct
tgctggggtgcatccatgccaccagccagccaacccggctctggctggggtgagcaaccg
agcagcaagaatccccccaacggtcccgggggctgggggaaccccccaccgggaggcccc
ggcccaggccccaacatgcccaaagctgggaaccagtcctggggagctccagaggagaag
tccccaagctgggatgatccccacggcaaggcccccaagccccagggctggggagatggg
cccaagccgccccacagcggctggggcaacagcgctggaggagggggcaatggaggagga
ggaggagactggagagagcctgcagatggcaagaagaacagtcccaccaccaaccctccc
tgggagggagaaggagcaggaggctggaaagagagcaaccgaggctggggaaaacctggt
ccggggatggggggaaatgttggtggaggctggggagagccagcgatggcccaacagcgc
ccaagtggccctgcccaaggatggggcggcaagccccaggagagctccaacggcaacagc
ggaggcgttagaggagggagcatgggcggggcaggaggtggagaagggagcatgggatcc
tggggaggccctggccccgtgaagcccagtgtatcaggccgggagggcaacgggggagga
ggtagcaagcaggacccctcaggaggagagcccacagggtgggaggagccttccccaccc
tccatccgacgcaagatggagattgacgacggcacctcggcttggggcgacccgggcgcc
tacaacaagacggtcaacctctgggacaagaacaaccctgggggaggagggccaccacaa
ggtagacccccagggaacgctccagggaacgcccccgcatgcccccctggaaacaacaac
aaccacccccacccaccacatcaccctccccaccatcctcacgcctaccacggcccccca
ccacccctccagagccatgggggccacaacccccagggcccaggccagaacagtgggccc
atggacccagccatgcctcaccaggctgcgcctccaccacacagcagaccacccctcatg
ggtccaggctggggggagccttctagtgcccaccccaaactagagccctcctggggggag
cctgctccccctccggtcagcgtggacaacgggacctccgcctgggggaaacccaccggg
agccatgggggctggggtgtgggtgacaacagcccccaaccctacagacggggcaaccca
ccccttggatctgcaccttgcaaaccagcccccaaatctatgcaagactgctggggtggc
ggaggtggcggtgggggggaggacatgggtttgtctgggggccagtgggaccctgacgac
ggggacatgtggagcagccaggcctcccaggagagcaactcctggggcaacagacccagg
aagggcccacccaaggggaagattccaggcaagcaggaggaagcctggatcatgaatcgc
ctgatcaagcagctgacagacatgggcttccctagagatccagccgaggaggctctgaag
aggaacaacatgaacctggaccaggccatgagtgctctgttggagaagaagacagagctg
gacaggcgggggatgggcatgtccgactacaacaactgtctgatcaacaaggggccaatg
ggctgccggcctcccctccactccaaagagtcctcctcagatcgctcccctttcctcgac
aaggacggtgttggtagcctggtggaggacgtccacacctcctcaccgtttatgccttgt
tcccccggccccctcagcctgaaactcccctccctgcccagcactgccctgcctctatcc
agccagggcctgggcggcccacagggcctagccatgcaaaacttgaacaacagacagatg
cagagtggaatgttgggcagtagcggtgcagcacaagcccgggccatgcagcagcctcct
cctcagccgtcagtgccgcctctcggctcctcccagcctagtctacgcgctcaagtgcct
cagtttctctcccctcaggttcaagcacagctcttacagtttgcagcaaaaaacattggt
ctgaatcctgcacttttaacctcaccaataaaccctcaacatatgacccttttgaaccaa
ctataccagctgcaactggcgtaccagcgtttacaaattcagcagcagatgttgcaggcg
cagcgtaacgtttcagctcccatccgacagcaagagcagcatgttgcacgtacaatcaat
aacatgcagcagcagatccaacagcaccagagacagctggcccaggccctgctgatgaag
cagcagcagaccctcggctccctctcctcctccggcctgcaccacggccaaggcaaatca
gccctggacttgttcccaggccacccccaggctccgggcctacccgacctgcagaccaaa
gagcagcagtcgtcccccaactcctacagcccctaccctctctctggactgaatcctaac
atgaatgtaaccggcatggaggtgggaggcctgtccatgaaggagcttccccagccccag
tctcgcctctcccagtggacacaccccaactccatggacagcctctctggaggctcatcc
tctctggagcccaacctgaacaagcacggttccaacctgggcccgcccgggaagcccccc
caaatggaggatgggtacagcccctacggcatgatgcctggctccgagtcccccaccaac
cccctggtgcccccagacagctggagccagggcaagagccccaacgacaagatggtcaac
ggcaccaacatcacctggcctccagagttctgcccgggcgtgccctggaagggcctgcag
aacatcgacccggagaacgaccccaacatgaccccggggagcgttcccagtggccccacc
atcaacaccaacatccaggacgtcaaccgctacctgcagagagaccgcagcggaggctcc
tcccccacctcatctcagaacgaggccctgcccccctccaccgattggccagtcagtgcc
tactctagctcgttcagtctgtcgtccccggaaacggacgacccaggtaaattgtcggac
atgaagtccacctggtccccggggcccatctcccacccctcccaggtctctctgtcccat
gagttgtggaaggtcccccaggggccccgcagtaacacagccgcccccacacggccccct
ccgggcctcaccaaccccaccaagcactcctccacctggggaggcaactccctgggcctg
gcccaaggctggagcagctcctactcctcagctaccacatggagtacagacagttccaac
aggaccagtagctggttggtcctgagaaacctcactccccagatagacgggtccaccctg
cggacgctatgcatgcagcatggccccctcatcacattccacctcaacctgacccagggc
aacgcattggtgcgctacagctccaaggaggaggccgccaaggcccagaagtccctgcac
atgtgcgttctgggtaacaccaccatcctggcagagtttgctggggaggaagaggtccag
cgcttctttgcacagggccagcagctagcctcaaccaccagctggcaggctgacccaggc
gtcaatcagacgcggatgggcagttccgggcccagatcctcgcaccccattggccacccc
cactggaactctggcggcagcagtggcggcatgggaggaggtggagccaagactggtgga
gacctgctgtgggggggtgtgccccagtactccagtctatggggaccgcccagtggagag
gaggggcgggtcatggggagtcctactccaatcaacacgctgctgcctggggacctgctg
agcggggagtccatgtag
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