Salmo trutta (river trout): 115206263
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Entry
115206263 CDS
T08542
Name
(RefSeq) pre-mRNA-processing-splicing factor 8
KO
K12856
pre-mRNA-processing factor 8
Organism
stru
Salmo trutta (river trout)
Pathway
stru03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
stru00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
115206263
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
stru03041
]
115206263
Spliceosome [BR:
stru03041
]
Complex B
U4/U6.U5 tri-snRNP components
U5 snRNP specific factors
115206263
Complex C
U5 SnRNP specific factors
115206263
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PROCN
PRP8_domainIV
U6-snRNA_bdg
PRO8NT
U5_2-snRNA_bdg
PROCT
RRM_4
JAB
Motif
Other DBs
NCBI-GeneID:
115206263
NCBI-ProteinID:
XP_029628886
Ensembl:
ENSSTUG00000046974
LinkDB
All DBs
Position
13:62942203..62972019
Genome browser
AA seq
2338 aa
AA seq
DB search
MAAAFPYRGVPGGMPPGIHPPAQVPDYMSEEKLQEKARKWQQLQAKRYSEKRKFGFVDAQ
KEDMPPEHVRKIIRDHGDMTNRKFRHDKRVYLGALKYMPHAVLKLLENMPMPWEQIRDVP
VLYHITGAISFVNEIPWVIEPVYIAQWGAMWIMMRREKRDRRHFKRMRFPPFDDEEPPLD
YADNILDVEPLEAIQMELDAEEDSSVAEWLYEHQPLKDTNKYVNGTTYRRWQFTLPMMST
LYRLANQLLTDLVDYNYFYLFDLKAFFTSKALNMAIPGGPKFEPLVRDINLQDEDWNEFN
DINKIIIRQPIRTEYKIAFPYLYNNLPHHVHLTWYHTPNVVFIKTEDPDLPAFYFDPLIN
PISHRHSVKSQEPLPEDDEEFELPEYVEPFLKETPLYTDNTANGIALLWAPRPFNLRSGR
TRRAIDIPLIKNWYREHCPAGQPVKVRVSYQKLLKYYVLNALKHRPPKAQKKRYLFRSFK
ATKFFQSTKLDWVEVGLQVCRQGYNMLNLLIHRKNLNYLHLDYNFNLKPVKTLTTKERKK
SRFGNAFHLCREVLRLSKLVVDSHVQYRLGNVDAFQLADGLQYIFAHVGQLTGMYRYKYK
LMRQIRMCKDLKHLIYYRFNTGPVGKGPGCGFWAPGWRVWLFFMRGITPLLERWLGNLLA
RQFEGRHSKGVAKTVTKQRVESHFDLELRAAVMHDILDMMPEGIKQNKARTILQHLSESW
RCWKANIPWKVPGLPTPIENMILRYVKAKADWWTNTAHYNRERIRRGATVDKTVCKKNLG
RLTRLYLKAEQERQHNYLKDGPYITAEEAVAIYTTTVHWLESRRFSPIPFPPLSYKHDTK
LLILALERLKEAYSVKSRLNQSQREELGLIEQAYDNPHEALSRIKRHLLTQRAFKEVGIE
FMDLYSHLVPVYDVEPLEKITDAYLDQYLWYEADKRRLFPPWIKPADTEPPPLLVYKWCQ
GINNLQDVWETMEGECNVMLESRYEKMYEKIDLTLLNRLLRLIVDHNIADYMTAKNNVVI
NYKDMNHTNSYGIIRGLQFASFIVQYYGLVMDLLVLGLHRASEMAGPPQMPNDFLSFQDT
ATESAHPIRLYCRYIDRIHIFFRFSADEARDLIQRYLTEHPDPNNENIVGYNNKKCWPRD
ARMRLMKHDVNLGRAVFWDIKNRLPRSVTTVQWENSFVSVYSKDNPNLLFNMCGFECRIL
PKCRTSYEEFTHKDGVWNLQNEVTKERTAQCFLRVDDESMQRFHNRVRQILMASGSTTFT
KIVNKWNTALIGLMTYFREAVVNTQELLDLLVKCENKIQTRIKIGLNSKMPSRFPPVVFY
TPKELGGLGMLSMGHVLIPQSDLRWSKQTDVGITHFRSGMSHEEDQLIPNLYRYIQPWES
EFIDSQRVWAEYALKRQEAIAQNRRLTLEDLEDSWDRGIPRINTLFQKDRHTLAYDKGWR
VRTDFKQYQVLKQNPFWWTHQRHDGKLWNLNNYRTDMIQALGGVEGILEHTLFKGTYFPT
WEGLFWEKASGFEESMKWKKLTNAQRSGLNQIPNRRFTLWWSPTINRANVYVGFQVQLDL
TGIFMHGKIPTLKISLIQIFRAHLWQKIHESVVMDLCQVFDQELDALEIETVQKETIHPR
KSYKMNSSCADILLFASYKWNVSRPSLLADSKDVMDSTTTQKYWIDIQLRWGDYDSHDIE
RYARAKFLDYTTDNMSIYPSPTGVLIAIDLAYNLHSGYGNWFPGGKPLIQQAMAKIMKAN
PALYVLRERIRKGLQLYSSEPTEPYLSSQNYGELFSNQIIWFVDDTNVYRVTIHKTFEGN
LTTKPINGAIFIFNPRTGQLFLKIIHTSVWAGQKRLGQLAKWKTAEEVAALIRSLPVEEQ
PKQIIVTRKGMLDPLEVHLLDFPNIVIKGSELQLPFQACLKVEKFGDLILKATEPQMVLF
NLYDDWLKTISSYTAFSRLILILRALHVNNDRAKVILKPDKTTITEPHHIWPTLTDEEWI
KVEVQLKDLILADYGKKNNVNVASLTQSEIRDIILGMEISAPSQQRQQIAEIEKQTKEQS
QLTATQTRTVNKHGDEIITSTTSNYETQTFSSKTEWRVRAISAANLHLRTNHIYVSSDDI
KETGYTYILPKNVLKKFICISDLRAQIAGYLYGTSPPDNPQVKEIRCIVMVPQWGTHQTV
HLPNQLPGHEYLKEMEPLGWIHTQPNESPQLSPQDVTSHAKIMADNPAWDGEKTIIITCS
FTPGSCTLTAYKLTPSGYEWGRQNTDKGNNPKGYLPSHYERVQMLLSDRFLGFFMVPGQV
SWNYNFMGVRHDPNMKYDLQLSNPKEFYHEVHRPSHFLNFASLQEGEIYNADREDMYG
NT seq
7017 nt
NT seq
+upstream
nt +downstream
nt
atggcagctgcattcccttatagaggggtacctggtggaatgcccccaggtatccatccc
ccagcccaggttccagattacatgtctgaggaaaaactgcaagagaaagccagaaaatgg
cagcagttgcaggcgaagcgctactctgagaagaggaagtttgggtttgttgacgcccag
aaggaagacatgccacctgagcatgtccgtaagatcatcagggaccacggtgacatgacc
aacaggaagttccgtcacgacaagagggtctacctgggagccctgaagtacatgccccac
gcggtgctgaagctactggagaacatgcccatgccttgggagcagatcagagatgtgcct
gttctataccacatcaccggagcaatttcctttgtcaacgagatcccctgggtcatagag
cctgtctacatcgcccagtggggcgccatgtggatcatgatgcgccgtgagaaaagggac
cgtcgtcacttcaagcgtatgcgcttccctccctttgacgatgaggaacctccgctggac
tacgctgataacatcctggacgtggagccactggaggccatccagatggagctggatgca
gaagaggactcctccgtggcggagtggctctacgaacaccagccccttaaggacaccaac
aagtatgtgaacgggaccacgtacaggcgttggcagttcaccctgcccatgatgtccacg
ctgtaccgtctggccaaccagctgctgactgacctggtggactacaactatttctacctg
tttgacctgaaggccttcttcacctccaaggccctcaacatggccatccctgggggaccc
aagtttgaacccctagttagggacatcaacctccaagatgaagactggaacgagttcaac
gacatcaacaaaattatcatcagacagccaatcaggacggagtacaagattgccttccca
tacctgtacaacaaccttccccaccacgttcacctcacctggtaccacactcccaatgtg
gttttcatcaagactgaggatcctgatttgccagcgttctactttgaccccctgatcaac
cccatctcccacagacactcagtcaagagtcaggagcctctgccagaggatgacgaggag
tttgagcttccagagtacgtggagcccttcctgaaggagacgcccctctacacagacaac
acagccaatggaatcgctttgctctgggcgccacgccccttcaatctgcgatctgggagg
accaggcgggccatcgacatcccactcatcaagaactggtatcgtgagcactgcccggcc
ggccagccagtgaaggtgcgtgtgtcttaccagaaactgctcaagtactacgtactcaac
gctctcaaacacagaccacccaaggcccagaagaagaggtacttgttccgttccttcaaa
gccaccaagttcttccagtcgactaagctggactgggtggaggtgggcctgcaggtgtgc
agacagggctacaacatgctgaacctgctcatccaccgcaagaacctcaactacttgcac
ctggattacaacttcaacctcaagcctgtcaagaccctcaccacaaaggaacgtaagaag
tccaggttcgggaatgccttccatctgtgcagagaggtgctgcgtctcagcaagctggtg
gtggacagccacgtacagtacagactgggcaacgtggatgctttccagttggcagacggg
ctgcagtacatctttgcccacgtgggccagctgactggcatgtaccgctacaagtacaag
ctgatgagacagatccgcatgtgcaaggacctcaagcacctcatctactaccgcttcaac
actggtccggtgggtaagggtccaggctgtgggttctgggccccaggatggagggtatgg
ctgttcttcatgaggggcatcacccccctgctagagagatggctcggcaacttgctggcc
aggcagttcgaaggtcgtcactccaagggcgtggcgaagactgtgacgaagcagcgcgtg
gagtcccactttgacctagagctgcgtgctgccgtgatgcatgacatcctggacatgatg
cctgagggcatcaagcagaacaaggccagaaccatcctgcagcacctctctgagtcgtgg
cgctgctggaaggccaacatcccctggaaggtcccaggcctgcccacccccatcgagaac
atgatcctacggtatgtgaaggccaaagctgattggtggaccaacacggcccactataac
cgcgagcgaatcaggcgcggcgccaccgtggacaagacggtgtgcaagaagaacctgggc
agactgacccgtctgtacctgaaggctgagcaggagaggcagcacaactacctgaaggat
ggtccatacatcacagcagaggaggctgtggccatctacaccaccacagtccactggctg
gagagcagacgcttctcccccatccccttccccccgctgtcctacaaacacgacaccaag
ctgctcatcctggccctggagaggctcaaagaggcctacagtgtgaagtccaggctgaac
cagtcccagagagaggagttggggctgatagaacaggcttatgacaaccctcacgaggcc
ctgtccagaatcaaacgtcacctgctcacacagagagccttcaaggaggttggcatagag
ttcatggacctgtacagccacctggtgcctgtgtatgatgtggagcccctggagaagatc
accgatgcctacctggaccagtacctgtggtatgaggctgacaaacgacgtctcttcccc
ccctggatcaaaccggctgacacagagcctcctccactcctcgtctacaagtggtgccaa
ggcatcaacaacctgcaggatgtgtgggagacgatggagggagagtgtaacgtgatgctg
gagtctcgctatgagaagatgtatgagaaaatagatctgacgctgctcaacagactgctg
cgtctcatcgtggaccacaacatcgctgactacatgaccgccaagaacaacgtggtcatc
aactacaaggacatgaaccacaccaactcgtatggtatcatccgtggtctgcagtttgcc
tcgttcatcgtgcagtactacggcctggtcatggacctgttggtgctggggctccacagg
gccagtgagatggccggaccccctcagatgcccaatgacttcctgtctttccaggataca
gccacagagagcgcccaccccatccgcctctactgcagatacattgaccgcatacacatc
tttttcaggttctcagctgatgaggccagggacctgatccagaggtacctgacggagcac
cctgaccccaacaatgagaacattgtgggctacaacaacaagaagtgctggcccagagac
gccaggatgagactgatgaagcacgatgtcaacctgggtcgtgctgtgttctgggacatt
aagaaccgcctgcctcgctctgtgaccacggtccaatgggagaacagctttgtgtccgtc
tacagcaaagacaatcctaacctgctcttcaacatgtgtggcttcgagtgccgcatcctg
cccaagtgtcgcaccagctacgaggagttcacccacaaggacggcgtctggaacctgcag
aacgaggtgaccaaagagcgtacggcccagtgtttcctgcgtgtggatgatgagtccatg
cagcggtttcacaatagagtccgacagatcctcatggcctcaggatccaccaccttcacc
aagattgtgaacaagtggaacacggctctgatagggctgatgacgtacttccgcgaggcg
gtggtcaacacccaggagctgctggacctgctggtgaagtgtgagaacaagatccagacc
cgtatcaagattggcctcaactccaagatgcccagtcgcttcccccctgtcgttttctac
acccccaaggagctgggagggctgggcatgctgtccatgggacacgtcctcatcccacag
tcggatctgaggtggtcgaagcagactgacgttggcatcacccatttccggtccggtatg
agccacgaggaggaccagctgattcctaacctgtaccgctacatccagccctgggagagt
gagttcatcgactcccagagagtctgggcagagtacgccctgaagagacaggaggctatc
gcacagaacaggcgtctgaccctggaggacttggaggactcttgggacagaggtatcccc
cgtatcaacaccctgttccagaaggacagacacacgctggcctacgacaagggctggagg
gtccgcactgacttcaaacagtaccaggttctgaagcagaacccgttctggtggacccac
cagcggcacgacgggaagttgtggaacctcaacaactacaggacagacatgatccaggct
ctgggaggggtggagggcatcctggaacacacgctcttcaaaggaacctacttccccacc
tgggagggtctcttctgggagaaggccagtggctttgaggagtccatgaaatggaagaag
ctgaccaacgcccagagatctggtctgaaccagatccccaaccgtcgcttcaccctctgg
tggtctcccactatcaacagggccaacgtgtacgtgggtttccaggtgcagctggatctg
actgggatcttcatgcacggaaagatccccaccctgaagatctccctcatccagatcttc
agggctcacttgtggcagaagatccacgagagcgtcgtcatggatctctgtcaggtgttt
gaccaggagctggatgccctggagattgagaccgtgcagaaggaaaccattcaccccagg
aagtcctacaagatgaactcctcctgcgccgacatactactcttcgcctcctacaagtgg
aacgtctcacgcccctcgctgctcgctgactcaaaggacgtgatggacagcaccaccacc
cagaagtactggattgacatacagcttcgctggggagactatgactctcacgacatcgag
cgctacgctagagccaagttcctggactacaccaccgacaacatgagcatctacccctcc
cccaccggggtgctcatcgccatcgacctggcctacaacctccacagtgggtatggtaac
tggttcccgggaggcaagcctcttatccagcaggccatggctaagatcatgaaggccaac
cctgctctgtacgtcctgagggagcgcatccgtaagggtctgcagctctactcctcagag
cccactgagccctacctgtcctcccagaactacggagagctcttctccaatcagatcatc
tggtttgtggacgacactaacgtctaccgtgtcaccatccacaagacctttgagggtaac
ttgaccaccaagcccatcaacggagccatcttcatcttcaaccccaggacaggtcagctc
ttcctcaagatcatccacacctctgtgtgggccggacagaaacgtctgggacagctggct
aagtggaagacagctgaggaggtggctgctcttattcgttccctccctgtggaggagcag
cccaaacagatcattgtcaccaggaagggcatgctggatcccctcgaggtccacttgctg
gacttccccaacatcgtgatcaagggctctgagctgcagctgcccttccaggcctgtctg
aaggtggagaagtttggagacctaatcctgaaggccaccgagcctcagatggtcctcttc
aacctgtacgacgactggctcaagaccatctcctcctacaccgcattctcacgtcttatc
ctgatcctaagggcgctccatgtgaacaacgaccgtgccaaggtgatcctgaagcctgat
aagaccaccatcacagagcctcaccacatctggcccacgctgaccgacgaggagtggatc
aaggtggaggtgcagctcaaagacctcatcctggccgactatggaaagaagaacaacgtg
aacgtggcgtctctgacccagtctgagatccgggacatcatcctgggcatggagatctct
gctccgtcccagcagcgccagcagatcgctgagatcgagaagcagaccaaggagcagtcc
cagctcaccgccacgcagacacgcacagtcaacaaacacggagacgagatcatcacctca
acaacctccaactacgagacacagaccttctcctccaagacagaatggagagtcagggcc
atctctgctgccaacctgcacctgaggaccaaccacatctacgtgtcgtctgatgacatc
aaggagacaggatacacctacatcctgcccaagaacgtcctcaagaagttcatctgcatc
tcagacctgcgagcccagattgcaggttacctgtacggcaccagtccccctgacaacccc
caggtgaaggagattaggtgtatcgttatggtaccccagtggggaactcatcagaccgtc
cacctacccaatcagctgcctggtcacgagtacctcaaggagatggagcccctgggttgg
atccacacccagcccaacgagtctccccagctctccccccaggacgttaccagccacgcc
aagatcatggctgacaacccagcctgggacggagagaagaccatcatcatcacctgcagt
ttcactcctggctcatgcactctgacggcctacaagctgactcccagtgggtacgagtgg
ggcagacagaacacagacaagggcaacaaccccaagggctacctgccctcccactatgag
agggttcagatgcttctgtctgaccgcttcctgggcttcttcatggtgcctggacaggtt
tcctggaactacaacttcatgggtgtccgccacgaccccaacatgaagtatgacctgcag
ctgtccaaccccaaggagttctaccacgaggtccatcgcccctctcacttcctcaacttc
gcctccctgcaggagggagagatctacaacgcagacagagaggacatgtacggttga
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integrated database retrieval system
