Salmo trutta (river trout): 115206325
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Entry
115206325 CDS
T08542
Name
(RefSeq) transcription elongation factor SPT6
KO
K11292
transcription elongation factor SPT6
Organism
stru
Salmo trutta (river trout)
Brite
KEGG Orthology (KO) [BR:
stru00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
stru03021
]
115206325
03036 Chromosome and associated proteins [BR:
stru03036
]
115206325
Transcription machinery [BR:
stru03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription elongation factors
115206325
Chromosome and associated proteins [BR:
stru03036
]
Eukaryotic type
Nucleosome assembly factors
Histone chaperones
Other Histone chaperones and regulators
115206325
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
YqgF
SH2_2
HHH_7
HTH_44
Tex_central_region
SPT6_acidic
Spt6_S1
HHH_3
S1
S1_RRP5
HHH_9
SH2
Tex_N
Tex_YqgF
Motif
Other DBs
NCBI-GeneID:
115206325
NCBI-ProteinID:
XP_029628986
LinkDB
All DBs
Position
13:64947031..64969035
Genome browser
AA seq
1420 aa
AA seq
DB search
MKFLEAVDIASAVTDVLGTCSHEEEEQENTEDQDEDGNLSGLIDDGVDEGEGEEEEEKEG
KKDKEGDSDSGEEIGHHKRKRSFDDRLDDDDIDLIEENLGVKVKRQKFRRLRDMSDDEDE
EGDDDIREAHEKDMIADEIFMGTGADEGEALDVPLHPGEDEEEDDEESDIDDFIVDDDGQ
PLKKSKWRKKLPGYTDAALQEAQEIFGGDFDFAEFDTEAYEDAEEEEDADEESWDRPKKQ
TKKRVGRRSIFEIYEPSELESSHMTDQDNEIRSTDMPERFQLRSTCVKPAEDDELEQEAE
WIYRNAFSTLTISMQENADYLDRGPATTFSRKGPSTIQKIKEALNLMRNQHFEVPFIAFY
RKEYVEPEFNINDLWKVWQWDEKWTQLKTRKQNLRRLFQKMQGYQFEQISADPDKPLADG
IRPLDTSDLERLKDVQSSDELGDVYNHFLLYYGRDIPKMQNAARSSKKKLKKIKEVDEDG
NEQEVVEEEDEEEEQPKGPDLKLASRRDMYSICQGAGLDGLAKKFGLNPEQFGENLRDSY
QRHETEQFPAEPMELAKDYICSQFSTAEAVLEGIRYMVAMQIAREPLVRHVLRQTFQERA
KINIKPTKKGKKDVDEAHYGFSFKYLKNKPVKELSGDQFLKMFQAEEEGLLIINICIDLI
GVKGYGGDQAYYEEIKQFYYRDEFSHQVQEWNRQRTLAIERSLKQFLYPQMAKELKNKLI
AEAKENIIKACSRKLYNWLKVAPYRPDQQVEEDEELMSEAQGKGIRVLGVAFSSSRDTPV
FCALVNGDGEVGDFLRLPYFLKRRNAWREDEREKKIHDIETLKKFLNSKKPHIIAIAGEN
RDAQMVIEDIKRTASELEQESSFPTIGVELVDNELAMLYMNSKKSEADFRDYPPLLRQAV
SVARKIQDPLVEYAQVCSSDEDILCLKLHPLQEHVVKEDLLNALYCEFINRVNEVGVDVN
RAIAHPYTQSLLQYVCGLGPRKGSHLLRILKQNNTRLENRTQLVTMCHMGPKVFINCAGF
IKIDTASLGDSTDSYIEVLDGSRVHPETYEWARKMAVDALEYDESAEDANLAGALEEILE
NPERLKDLDLDAFAEELERQGYGNKGITLYDIRAELSCRYKDLRSTYRGPNTEEIFNLLT
KETPETFYIGKLITSVVTGIAHWRPQGESYDQAIRNDETGLWQCPFCQQDNFPELSEVWN
HFDSGSCPGQAIGVRCRMDNGVTGFIPTKFLSDKVVKHPEERVKVGMTVHCRIMKIDIEK
LSVDLTCRTSDLSDKNNDWKLPKDTYYDFDTETEDVKQEEEAKKKQQRTTYIKRVIAHPS
FHNINFMQAEKMMESMDQGDVIIRPSSKGENHLTVTWKVADGIYQHIDVREEGKENAFSL
GHTLWINTEEFEDLDEITARYVQPMAAFARDLLGHKYFQD
NT seq
4263 nt
NT seq
+upstream
nt +downstream
nt
atgaagtttttggaagcagtcgacattgccagtgctgtaactgatgtcttaggcacatgt
tcacatgaggaggaggagcaggagaataccgaggatcaagatgaggatggaaacctcagt
ggtctgattgatgatggtgtggatgaaggggaaggagaggaagaggaggagaaggaaggg
aagaaagataaagaaggagatagtgactctggggaggaaattggacaccataagaggaag
agaagctttgacgaccgcttggatgatgatgatattgatctcattgaggagaatttggga
gtgaaagtgaaaaggcaaaagttccgtcgtttgcgagacatgtcagacgatgaggatgag
gagggagatgatgacatcagggaggcccatgagaaggacatgatagcggatgagatcttc
atggggacgggagcggatgagggcgaggcattggatgtgcctttgcatcctggggaggat
gaggaggaggacgatgaagagtctgatatcgatgactttattgtggatgatgacggacag
cccttgaagaaatccaaatggaggaagaagctgccaggatatacagatgcagcccttcag
gaggcccaggagatattcggaggggactttgactttgccgagtttgacactgaagcctat
gaagatgcagaggaggaggaggatgcagatgaagagtcatgggaccggcccaagaagcag
accaagaagagggtgggccgacgcagtatctttgagatctatgagcccagtgagctggag
agcagtcacatgacggaccaggacaatgagatccgttccactgacatgccagagaggttc
cagttgcgctccacttgtgtgaagcctgcagaggatgatgagttggaacaggaggctgag
tggatctataggaatgccttctctactctcaccatctccatgcaggagaacgcagactat
ttggacagaggtccagccactacattcagcagaaaaggccccagcaccatccagaagatt
aaagaggctttgaatttaatgagaaaccaacactttgaggttccgttcatagcgttctat
aggaaagagtatgtggaacctgaattcaatatcaatgatctgtggaaagtttggcagtgg
gatgagaagtggacccagctgaaaacccgcaaacagaacctgagacgcctgttccagaag
atgcagggataccagtttgaacagatctcagctgacccagataagccactggctgatggc
attcgaccattagacacttcagatttagagaggctgaaggatgtccagtctagtgatgaa
ctgggcgacgtctacaaccatttcctgctgtactatggccgggatatcccaaagatgcag
aatgcagccaggtccagcaagaagaagctgaagaagatcaaagaagtggatgaagatggt
aatgagcaggaagtagtggaggaggaagatgaagaagaggagcagccgaaggggccggac
ctgaagcttgcatctcgcagggatatgtacagcatctgccagggtgcaggactggatggc
ctggccaagaagtttggtctgaatccagagcagtttggagagaacctacgtgacagttac
cagcgtcacgagacggagcagtttcctgctgagcccatggagctggctaaggactacatc
tgcagccagttcagcacagcagaggcagtactggaggggattcgctacatggtcgccatg
cagatcgctcgggagcctctagtcagacatgtgctccgacagacattccaggagagagct
aagatcaacatcaaacccaccaagaagggaaagaaggatgtggatgaggcccattatggc
ttctcctttaaatacctgaaaaacaagcctgtaaaagagctgagtggagaccagttcctc
aagatgttccaggcagaggaagagggcctgctcatcattaacatttgtattgacttgatt
ggagtgaaggggtacggaggtgaccaggcgtactatgaggagataaagcagttttactac
agagatgagttcagccaccaggttcaggagtggaacagacagcgcactctggccatcgag
cgctccctcaaacagttcctttacccgcagatggcgaaagagctgaagaacaaacttatt
gcagaagcaaaggagaacatcatcaaggcctgcagcaggaagctgtataactggctgaag
gtggcgccatatcggcccgaccaacaagtggaggaggacgaggagctcatgtctgaggct
cagggcaaagggatccgtgtgctgggagtggccttctcatccagcagagacaccccagtg
ttctgtgccctggtgaacggtgacggagaagtgggggatttcctcaggcttccttacttc
ctgaagaggaggaacgcatggagggaggatgaaagggagaaaaagatccacgatattgaa
accctgaagaagtttctgaacagcaagaagcctcacatcattgctatagctggggagaac
agggacgcccagatggtgattgaggacattaaacgcactgccagtgagctggagcaggag
tcctccttccccaccatcggggtggagctggttgacaatgaactggccatgctctacatg
aacagcaagaagtcagaggcagatttccgggactacccccctctcctgagacaggctgtg
tctgtggccaggaagatccaggaccccctggtggagtatgctcaggtgtgcagcagtgac
gaggacatcctctgcctcaagttgcaccctttgcaggagcatgtagtgaaggaggacctg
ctgaatgctctgtactgtgagtttatcaaccgggtgaatgaagtgggtgtggatgtgaac
cgggccatagcccacccctacacccagagcctgttgcagtacgtctgtggcctggggccc
aggaagggatcccacctgctcaggatcctgaaacaaaataacactcgtctggagaaccgc
actcaactggtcaccatgtgtcacatgggccccaaggtcttcatcaactgtgctggtttc
atcaagattgacacagcttctctgggagatagtactgactcctatattgaggttctggac
gggtcgcgggtgcacccagagacctatgagtgggccaggaagatggccgtggacgctctg
gagtacgatgagtcagcggaggacgccaacctggccggagcactggaggagatcctggaa
aacccggagcggctcaaagacctggacttggatgccttcgctgaggagctggaaagacag
ggttatggtaacaagggcatcaccctgtatgacatccgtgctgagctgagctgcaggtac
aaagacctgaggtccacctacagaggacctaacacagaggagatcttcaacctgctcacc
aaggagacaccagagacattctacatcggtaaacttatcaccagtgtggtgacaggcatt
gctcactggcgcccccagggggagagttatgaccaggccataaggaatgatgagacaggt
ctgtggcagtgtcctttctgtcagcaggacaacttccctgagctcagcgaggtgtggaat
cattttgacagtggctcctgccctggccaagctattggggtccgctgtcgcatggacaac
ggagtcaccggctttatccccaccaagttcctcagtgacaaagtggtcaagcaccctgaa
gaaagggttaaggtgggcatgacagtgcactgcaggatcatgaagattgacattgagaag
ctcagtgtggatctgacctgtcgcacgtcagacctgtcggataagaacaacgactggaag
cttcccaaggacacctactacgactttgacactgagacagaggatgtgaagcaggaggag
gaggccaagaagaaacagcagagaacaacctacattaagagggtgatagcccacccatca
tttcataacatcaacttcatgcaggcagagaagatgatggagtccatggaccagggagat
gtgatcatcaggcccagtagtaagggagagaaccacctgactgttacttggaaggttgcc
gatggcatctaccagcacattgacgtacgagaggagggcaaggagaacgccttcagcctg
ggacataccctgtggatcaacactgaggaatttgaagatctggatgaaatcacagccaga
tacgttcaaccaatggctgcgtttgctcgcgatctgcttggtcacaagtattttcaagat
tga
DBGET
integrated database retrieval system
