Salmo trutta (river trout): 115206356
Help
Entry
115206356 CDS
T08542
Name
(RefSeq) replication protein A 70 kDa DNA-binding subunit-like
KO
K07466
replication factor A1
Organism
stru
Salmo trutta (river trout)
Pathway
stru03030
DNA replication
stru03420
Nucleotide excision repair
stru03430
Mismatch repair
stru03440
Homologous recombination
stru03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
stru00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
115206356
03420 Nucleotide excision repair
115206356
03430 Mismatch repair
115206356
03440 Homologous recombination
115206356
03460 Fanconi anemia pathway
115206356
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
stru03000
]
115206356
03032 DNA replication proteins [BR:
stru03032
]
115206356
03400 DNA repair and recombination proteins [BR:
stru03400
]
115206356
Transcription factors [BR:
stru03000
]
Eukaryotic type
Zinc finger
Cys2His2 others
115206356
DNA replication proteins [BR:
stru03032
]
Eukaryotic type
DNA Replication Elongation Factors
RPA (replication protein A)
115206356
DNA repair and recombination proteins [BR:
stru03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
RPA (replication factor A)
115206356
MMR (mismatch excision repair)
115206356
DSBR (double strand breaks repair)
HR (homologous recombination)
115206356
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rep_fac-A_C
REPA_OB_2
Rep-A_N
tRNA_anti-codon
DUF223
Motif
Other DBs
NCBI-GeneID:
115206356
NCBI-ProteinID:
XP_029629065
Ensembl:
ENSSTUG00000037438
LinkDB
All DBs
Position
13:65804112..65865213
Genome browser
AA seq
609 aa
AA seq
DB search
MTNMLTLGAIEALTKGSNDLPNPILQLVNIRKIDGGSGPARFRLMMSDGQHSMSSFMLST
QLNPMAEDNRLSPNCICQLKRNVTNVLKDGRRVVVILDMEVVKSADEVAGKIGEPTPYVE
GQSKAPQSAPNPSVHPLQPQNGNYGTMNKGPSREFGGKKAMPPSAMPSTPGGSSKVVPIA
SLNPYQSKWTIRARVTNKSGIRTWSNSRGDGKLFSMEIVDESGEIRVTAFTQEVDKFYSI
IETGKVFYISKGSLKIANKQYSSLKNDYEMTLNGESTIIPCEDTQDVPMVQCNFVSIADL
EAREKDAVLDVIGVCKSVADVTRLTTKNNREVSKRTLNLMDQSGKLVEVTLWGEEAENFD
GSGQPILAIKGAKLSDYGGRSLSASFSSTVMVNPDIPEAYKLRGWYDKEGHSMDGQSLTE
ARTGGGGGGGNTNWKTLADIKTEHLGHGDKADYFSCIATIVYIRKENCLYQACPSQDCNK
KVVDQQNGMFRCEKCDKEFPNFKYRLILSANIADYGDNQWVTCFQESAEAILGQNAAYLG
QLKDSNEAAFEEIFQQANFHTFVFRNRVKLETYNDESRIKATVMEVKPVDHKEYSKRLIM
NIRKMAAAQ
NT seq
1830 nt
NT seq
+upstream
nt +downstream
nt
atgactaacatgctgacattgggagcgatagaggctctaaccaaaggctctaatgattta
ccaaaccccattcttcaattagtgaacatccgtaaaattgatggaggcagtggaccagcc
cgctttcgcctgatgatgagtgatggacagcactcaatgtcctcgttcatgctctccacc
caactcaacccgatggctgaggacaaccgactgtccccaaactgtatctgtcagctgaag
aggaacgtgaccaatgtcctaaaggatggacggcgtgtggtggtcatattagacatggag
gtggtgaagtctgcagatgaggtggctggaaagatcggagagcccacgccatacgtggaa
ggtcagagtaaagccccacagtcagcccccaatccctcagtccaccccctgcagccccag
aatggaaattatggcaccatgaacaaaggtcccagcagagagtttggggggaagaaggcc
atgccgccgtctgcaatgcccagcactcctgggggatcctccaaagtcgtgcccatcgcc
agcctcaacccctaccagtcaaagtggaccatccgagcacgtgtcaccaacaagagcggc
atccgcacctggagcaactctcgtggggacggcaagctgttctctatggagattgtggat
gagagtggagagatcagagtgactgcctttacccaggaggtggacaagttctacagcatc
attgagactggcaaggtgttctacatctccaagggatcactgaagatcgccaacaagcag
tattcgtccctgaagaatgactatgagatgaccctaaatggagagtccaccatcatcccc
tgtgaggacacccaggacgtacccatggtgcagtgcaacttcgtctccatcgctgacctg
gaggcccgagaaaaggacgccgttttggatgtgattggagtgtgtaagagcgtggctgac
gtgacccgcctcaccaccaagaacaaccgtgaggtctccaagaggacgctcaacctgatg
gaccagtctggtaaactggtggaggtcaccctgtggggagaggaggcagagaactttgat
ggatctgggcagcccatcttggccatcaaaggggccaagctgtccgactatgggggaaga
tctctgtctgcttcgttcagcagcaccgtcatggtcaaccccgacatccctgaggcatac
aagctgcggggctggtatgacaaggagggccactctatggatggccagtctctgacggag
gcgaggacaggtggaggaggaggaggagggaacaccaactggaagaccctggctgacatc
aagacggagcacctcggacacggagacaaggcagactacttcagctgcatcgccaccata
gtgtacatccgtaaggagaactgtctgtaccaggcgtgccctagtcaggactgcaataag
aaggtggtggaccagcagaacggcatgttccgctgtgagaagtgtgacaaagagttcccc
aacttcaagtaccgactcatcctttctgccaacatagcagactacggggacaaccagtgg
gtgacctgcttccaggagagtgctgaagccatcctgggacagaacgctgcttacctaggg
caactcaaagactcgaatgaagctgccttcgaggagatctttcagcaggccaacttccac
acgttcgtcttccgcaacagagtcaagctggagacctacaatgatgagtcccggatcaag
gccacggtgatggaggtgaaacctgtggaccacaaggagtacagcaagagactcatcatg
aacatcaggaagatggctgccgcccagtaa
DBGET
integrated database retrieval system
