Salmo trutta (river trout): 115206708
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Entry
115206708 CDS
T08542
Symbol
exosc5
Name
(RefSeq) exosome complex component RRP46
KO
K12590
exosome complex component RRP46
Organism
stru
Salmo trutta (river trout)
Pathway
stru03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
stru00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
115206708 (exosc5)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
stru03019
]
115206708 (exosc5)
Messenger RNA biogenesis [BR:
stru03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
115206708 (exosc5)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
Motif
Other DBs
NCBI-GeneID:
115206708
NCBI-ProteinID:
XP_029629768
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All DBs
Position
13:complement(88095980..88108097)
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AA seq
219 aa
AA seq
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MDVCGSSSPTLREFGCEQNLLSRPDGSSSFVQGDTSVLAGVYGPAEVKVSKEIYDRATLE
VVMQPKVGLPSVRERAREQCVRETCEASLLSTLHPRSSLTLVLQVVHDDGSLLSCFLNSA
CMALMDAGLPMSCLFAGVTCAIDTDGQVITDPNAEQEKESRALMTFAIDSTERRVMMSST
RGSFTVHELQQCIAVSQKASDKIFQFYRDSVRRRYSKTL
NT seq
660 nt
NT seq
+upstream
nt +downstream
nt
atggatgtgtgtggatcttcgagtcctactttgagggagtttggctgcgaacagaattta
ctatcacgacctgatggatcgtcgtccttcgtccaaggagacaccagtgtgttagctgga
gtgtatggcccggccgaggtgaaggtcagtaaggagatctatgacagagctaccctggag
gtggtgatgcagcccaaagtgggactaccaagtgtcagagagcgagccagagaacagtgt
gtgagggaaacatgcgaagcatctcttctctccacgcttcatccacgctcctccctcact
ctcgtcctccaagtggtccatgatgacggttcactgttgtcctgctttctgaactcagct
tgtatggccctgatggacgcaggcctgcctatgagctgtctgttcgctggggtcacctgt
gccatcgatacagatggccaggttattaccgaccccaacgcagaacaggagaaggaaagt
cgtgctttgatgaccttcgctattgacagtaccgagcgcagagtgatgatgtcatccacc
agaggatcttttacagttcatgagctgcagcagtgcatagctgtcagtcagaaagcatca
gacaagattttccagttctacagagattctgtcagacgaagatattccaagacgctctga
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