Salmo trutta (river trout): 115206732
Help
Entry
115206732 CDS
T08542
Symbol
ddx6
Name
(RefSeq) probable ATP-dependent RNA helicase DDX6
KO
K12614
ATP-dependent RNA helicase DDX6/DHH1 [EC:
5.6.2.7
]
Organism
stru
Salmo trutta (river trout)
Pathway
stru03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
stru00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
115206732 (ddx6)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
stru03019
]
115206732 (ddx6)
03036 Chromosome and associated proteins [BR:
stru03036
]
115206732 (ddx6)
Enzymes [BR:
stru01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
115206732 (ddx6)
Messenger RNA biogenesis [BR:
stru03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Common to processing body (P body) and stress granule
115206732 (ddx6)
mRNA degradation factors
5'-3' decay
Decapping complex
115206732 (ddx6)
Chromosome and associated proteins [BR:
stru03036
]
Eukaryotic type
Gene silencing
piRNA pathway
115206732 (ddx6)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
CMS1
SNF2-rel_dom
Motif
Other DBs
NCBI-GeneID:
115206732
NCBI-ProteinID:
XP_029629801
Ensembl:
ENSSTUG00000007375
UniProt:
A0A673X6N4
LinkDB
All DBs
Position
13:88830737..88858665
Genome browser
AA seq
493 aa
AA seq
DB search
MSTASTQNPVILGHSNQNGQLRGPVGKPAGGQGSGGGSHQTQQPGQMKQASSTINNGTGP
SSTQLAKANPTANTVIKPGDDWKRNLTLPPKDMRMRTSDVTATKGNEFEDYCLKRELLMG
IFEMGWEKPSPIQEESIPIALSGRDILARAKNGTGKSGAYLIPLLERIDLKKDCIQAMGI
VPTRELALQVSQICIQISKHMGGVKVMATTGGTNLRDDIMRLDETVHVVIATPGRILDLI
KKGVAKVNQVQMMVLDEADKLLSQDFVVMMEEVLSYLPKQRQILLYSATFPLSVQKFMNS
HLSKPYEINLMEELTLKGVTQYYAYVTERQKVHCLNTLFSRLQINQSIIFCNSSQRVELL
AKKISQLGYSCFYIHAKMRQEHRNRVFHDFRNGLCRNLVCTDLFTRGIDIQAVNVVINFD
FPKLGETYLHRIGRSGRFGHLGLAINLITYDDRFNLKGIEEQLGTEIRPIPGSIDKSLYV
AEYHSENGEEVKL
NT seq
1482 nt
NT seq
+upstream
nt +downstream
nt
atgagtaccgccagtacccagaacccagtgatactgggccattccaaccagaatggccag
ctccgaggcccggtggggaagcctgcaggagggcagggcagcggaggaggcagtcatcag
acacagcagcccggccagatgaagcaggcctccagcacaatcaacaacggtactgggcct
agcagcacccaactggctaaagctaaccccacagccaatactgtcatcaagcctggagat
gactggaagaggaatttgacgctccctccaaaagacatgaggatgagaacttcggacgta
acggcaactaaaggcaatgagtttgaagactactgcctgaagagggagctgctgatggga
atctttgagatgggctgggagaaaccctctccgatccaggaggagagcatccccatagcg
ttgtctgggagggacattctggccagggccaagaacgggacaggaaagagcggagcctac
ctcattcctctcctggagcgcattgacctgaagaaggactgcatacaagctatgggcatc
gttcccaccagggaactggctttgcaggtgagccagatctgtatccagatcagcaaacac
atgggaggtgtcaaagtcatggccacaacgggcggcaccaacctccgcgatgacatcatg
aggcttgacgagacagttcatgttgtgattgccacccctgggaggatcctggacctcatt
aagaagggtgtggccaaagtcaatcaggttcagatgatggttttggatgaggcagacaag
ctgttgtcccaggactttgtggtgatgatggaagaggtactgagctacctacccaaacag
agacagattctgctctactctgctacctttcctctcagcgtgcagaagttcatgaactcc
catctgtccaagccctacgagatcaacctgatggaggagttgaccctgaagggggtcacc
cagtattatgcctacgttacggagagacagaaggtccactgtctcaacacactcttctcc
aggctccagatcaaccagtctataatcttctgtaactcgtctcagagggtggagctgctg
gccaagaagatatctcagctgggctactcgtgtttctacatccatgccaagatgagacag
gagcaccgtaacagagtgttccacgacttcagaaacggcctctgccggaatctcgtctgc
acagaccttttcacgagaggtatcgacattcaggccgtaaatgttgtgatcaactttgac
ttccccaagctgggagagacatacctgcatcgcatcggcagatcaggtcgttttggtcac
ctgggtctggccatcaacctgatcacatacgatgaccgcttcaatctcaagggcatcgag
gaacagctgggaacagagatcaggcccatccccggcagcatagacaagagcctgtatgtt
gcagagtaccacagtgagaatggagaggaggtcaagctgtga
DBGET
integrated database retrieval system
