Salmo trutta (river trout): 115207646
Help
Entry
115207646 CDS
T08542
Symbol
tmf1
Name
(RefSeq) TATA element modulatory factor isoform X1
KO
K20286
TATA element modulatory factor
Organism
stru
Salmo trutta (river trout)
Brite
KEGG Orthology (KO) [BR:
stru00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
stru04131
]
115207646 (tmf1)
Membrane trafficking [BR:
stru04131
]
Endosome - Golgi transport
Rab GTPases and associated proteins
Rab associated proteins
115207646 (tmf1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TMF_TATA_bd
TMF_DNA_bd
ATG16
Ribosomal_60s
Motif
Other DBs
NCBI-GeneID:
115207646
NCBI-ProteinID:
XP_029630805
Ensembl:
ENSSTUG00000044281
LinkDB
All DBs
Position
14:22831831..22841508
Genome browser
AA seq
1177 aa
AA seq
DB search
MSWFSSTQLSSFAKQALTTAQKSIDRVLDIKQDEWGDTVVMPYDDLPGKTPLSGGWGMTQ
WDSPPEECTTTLPPSSEAITTPVTRMVVDETENFFSAFLPSGELQSVMDTQVVSVPPTKS
HRRPQEKDEEDKDTVVKDDVDPHKTGLTETNRLEDQEATENQAVLTESSSLWSSSEIVLV
QTPDPPVLAQGDSPDDTDSPLISESWIESTVDDTTAVSEDAQTERPFTPSETQPDFDDHI
SEPAVNTELEPPFNPSPPTPPREILLEAKDPKAGDRQSDTPSPKSEDRQSNTPSPPVSAF
SSGTSTTSDIEVLDHESVQSESSASSRQEIAEAKAGLHLMQGSFQLLSASACGDFPRLED
YPKLTESCGSSSDAFERIDSFSMQSLDSRSVSEVNSDDDIPGSRTLASVTAGPTPSPPVR
VATTAQEQEEEEEKQQQQEEEEDEEGITETMKDQSLDENEMEESGRSATPVNSEQPEDLI
EQESEADVTLSGPTPDHEEQLPPPITEEKRGVSTCQILELQKVIDELSSRLEKRELQLLS
VSKDKARLEEECDNLKDEVIGLKEESSSVQSLKEEFTQRIADTERKAQLACKERDIAKKE
IKGMREELSTRLNSNETMEIIREKEEQIRELLEEGEKLSKQQLQHSNIIKKLRVKEKESE
TKITKQNKKLKEQEEELKHLQQVLDEKEEVEKQHRDNIKKLNVVVERQEKDMTKLQSDSE
ELLENNRSLQAALDNSYKELAALHKAKASHASEAQEAALSRETQAKEELALALVKAQEEA
RMQQDALVNQVADLRLALQRVEQQQARKEDYLREEISDLQQRLQGAETRNQELSQSVTSA
TRPLLRQIENLQASLGGQTASWEKLEKSISDRLVEAQAQLAVAVEKERAATEELMAIKAQ
LASLESQNSLLRQEKGRLHGQLDAEKTRREKLEDDSSREHVELENLRGAHTRTQEEAKKE
KLLLTNQLEMEKMKVEQEKKKCYLAQEALKEKVDLFINERKVLVHSVGEPPASSTPSLSR
SSSISGVDHAGLHSSFTQEDSLGHSLGAMTMSMSGTNLYEAARLSGGSSIIENLQSQLKL
REGEIAQLQLEIASLERTRSSMAEEMVRLTNQNEEMEDSVKEIPTLKVQLQDLEQRHNTI
LQMYGEKAEEAEELRLDLEDVKNMFKTQIDELLKNQK
NT seq
3534 nt
NT seq
+upstream
nt +downstream
nt
atgagttggttcagttctacccaactgtcaagctttgccaaacaagctttgacaacggct
cagaagtccatcgaccgagtgctggacattaaacaagacgaatggggtgacacagtggta
atgccttatgacgatctaccagggaagactccattgagcggtggatgggggatgacacaa
tgggactctcccccggaggaatgcaccacaactctccccccatcatctgaggccatcaca
acgcctgtcacccgcatggttgtggatgaaacagagaacttcttcagtgcttttctgccc
tcaggagagctccagagtgtcatggacacccaggttgtctctgtgccacccaccaagtcc
cacaggcggccacaggagaaggatgaggaggacaaggatactgtggttaaggacgacgtg
gaccctcacaagacaggcctgacagagaccaacagactggaagaccaggaagctactgag
aaccaggctgtcctgactgagtcctcaagtctatggtcttcctctgaaattgtcctcgtt
cagacaccagaccctccagtcctggctcagggtgattctcctgatgacactgacagtcca
ctaatcagtgagagctggatagaatcaactgtggatgatacaactgctgtttctgaggat
gcacaaaccgaacgaccatttactccctcagaaacccaacctgattttgatgatcacatc
tctgaacccgccgtcaacactgaactggagccccccttcaatccatctcctcccacaccc
cctagggaaatcttattggaggccaaagaccccaaagcgggggacaggcagagtgacaca
ccctcccctaaatcggaggacagacagagcaacaccccctcccctcctgtcagcgccttc
tcctcaggcacctccaccaccagtgatattgaggttttggaccatgagagtgtacagagc
gagagttcagccagttccaggcaggagatagcagaggccaaagcaggcctccacctgatg
cagggctccttccagcttctctcagcctctgcctgtggggacttcccccgcttggaggac
taccccaagctgaccgagagctgtggatcctcctcagatgcctttgagcgcattgactcg
ttcagcatgcagtccctggacagccgcagtgtcagcgaagtcaactctgatgatgacatc
ccagggagccggacgctggcatctgtcaccgcagggcccacgccttcgccgcctgtcaga
gtggcaaccactgcacaggaacaggaagaagaagaggagaagcagcagcagcaggaggag
gaagaagacgaggaggggataacagaaacaatgaaggatcagtctctggatgagaatgag
atggaggagagtggtcgcagtgccacgcctgttaacagcgagcagcctgaggacctaata
gaacaggaatcagaggcggacgtcacgctgtcaggtcccacccctgaccatgaggaacag
ttgcccccaccaataacggaagagaaaagaggagtgtcaacatgtcagattctggagctt
caaaaggtaattgatgagctgtcaagccgccttgagaagagggagttacagctgctgtca
gtcagcaaagacaaggccaggctggaggaggagtgtgacaaccttaaagatgaggtgata
ggtcttaaggaggagagttccagtgtgcagtctctgaaggaggagtttacccagcgcatc
gcagacacagagaggaaagcccagctagcgtgcaaggagagggatattgccaagaaggag
ataaaggggatgagggaagagctgtccaccagactcaactccaacgagactatggagatc
atcagagaaaaggaggagcagatccgcgaactgctggaggagggtgagaagctgtccaag
cagcaactgcagcactccaacatcatcaagaagctgcgtgtgaaggagaaggagagcgag
accaaaatcaccaaacagaacaagaagctgaaagagcaggaggaagagctcaaacaccta
cagcaggttctggatgagaaggaggaagtggagaagcagcacagggacaacattaagaag
ctgaacgtggtggtggagcgccaggagaaggacatgaccaaactccagagtgactcagag
gagctcctggaaaacaacaggagcctgcaggctgccctcgacaactcctacaaggaactg
gctgcactgcacaaagccaaggctagccatgccagcgaggcccaggaggctgctttgagc
agggagacccaggccaaggaggagctggctctggccctggtgaaggcccaggaggaggcc
cgcatgcagcaggatgctctggtcaaccaggtggctgatctgcggctggctctgcagagg
gttgaacagcagcaggccaggaaagaagactacctgagggaggagatcagtgacctgcag
cagagactgcagggggcggagaccaggaaccaagagctgagtcagagtgttacctctgca
acgcggccgctgctcagacagatcgagaacctgcaggcctcgctggggggccagacagca
tcatgggagaaactggagaagagcatctcagatcgactagtggaagcacaggcccaactg
gctgttgctgtggaaaaggagcgtgcagcaactgaggagctgatggccattaaggcccag
ctggcctcactggagtcccagaattccctgcttcgacaagagaaagggcgtctccatggt
cagctggacgcagagaagaccaggcgggagaaactggaggatgacagcagcagggagcat
gtggagctggagaatctgaggggagcgcacactcgaacacaggaggaggccaagaaggag
aagctcctcctgaccaatcagctggagatggagaaaatgaaggtggagcaagagaagaag
aaatgctacctagcacaagaggccctgaaggaaaaggtagatctatttatcaatgagcgg
aaggtattggttcactctgtgggtgagcccccagcctcatccaccccctccctatcccgt
tccagctccatcagtggggtagaccacgccggcctgcactcctccttcacccaggaggac
tctctgggtcactcgttgggggcgatgacgatgtctatgagtgggaccaacctgtatgag
gcggctcggctcagtggaggctccagcatcatagagaacctgcagtcccagctcaaactc
cgagagggagagatagcacagctacagctggagatcgctagtctggagaggactcgctca
tccatggcggaggagatggtcagattgaccaatcagaatgaggagatggaggacagtgtg
aaggagatccccacactgaaagtacaacttcaggatctggagcagagacacaacaccatc
ctccagatgtatggagagaaggctgaggaggcagaggagctgagactcgacctggaggac
gtcaagaacatgttcaaaacccagattgacgaactgctcaagaaccagaagtag
DBGET
integrated database retrieval system
