Salmo trutta (river trout): 115208612
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Entry
115208612 CDS
T08542
Name
(RefSeq) probable ATP-dependent RNA helicase DDX5 isoform X1
KO
K12823
ATP-dependent RNA helicase DDX5/DBP2 [EC:
5.6.2.7
]
Organism
stru
Salmo trutta (river trout)
Pathway
stru03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
stru00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
115208612
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
stru03041
]
115208612
03009 Ribosome biogenesis [BR:
stru03009
]
115208612
Enzymes [BR:
stru01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
115208612
Spliceosome [BR:
stru03041
]
Complex A
U1 snRNP components
U1 related factors
115208612
Complex B
115208612
Ribosome biogenesis [BR:
stru03009
]
Eukaryotic type
Pre-60S particles
Helicases
115208612
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Helicase_C_2
ERCC3_RAD25_C
Motif
Other DBs
NCBI-GeneID:
115208612
NCBI-ProteinID:
XP_029632670
Ensembl:
ENSSTUG00000036181
LinkDB
All DBs
Position
14:64387612..64397857
Genome browser
AA seq
633 aa
AA seq
DB search
MPGFSDRDRGRDRGYGGAPRFGGGGGGSRGGPPQGKFGNPGERLRKKHWNMDELPKFEKN
FYQEHPDVTRRPPQEVENYLRSKDVTVKGRDCPKPMMKFHEANFPNYVMDVIAKQGWAEP
TPIQAQGWPLALSGKDMVGIAQTGSGKTLAYLLPAIVHIQHQPFLEHGDGPICLVLAPTR
ELAQQVQQVAAEYGRASRLKSVCVYGGAPKGPQIRDLERGVEICIATPGRLIDFLEAGKT
NLRRCTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMWSATWPKEVRQLAEDFLKQY
VQINVGALQLSANHNILQIVDVCNDGEKDDKLLRLLEEIMSEKENKTIIFTETKRRCDEL
TRRMRRDGWPAMGIHGDKSQQERDWVLNEFKYGKAPILIATDVASRGLDVEDVKFVINYD
YPNSSEDYIHRIGRTARSQKTGTAYTFFTPNNMKQASDLIAVLREANQAINPKLLQMAEA
RGGRGGGGRGGFRDDRRDRYSGGRSYGGGGGGGGGSYRDKDSDRGFSGGPKSAFGAKTQN
GVGYGGSTYDKGASSGGSYGNSYGSNGQASFGSTNQVGAFGGQNFQAPPQFGAAQAAAPN
GMGRPPFPFNPQAQQPQQPPPMVPYSMPPPFPQ
NT seq
1902 nt
NT seq
+upstream
nt +downstream
nt
atgcctggattttcagacagagatcgtggcagagacagggggtatggaggtgcacctcgt
tttggaggcggcggtggtggcagtaggggtggacctcctcaggggaaatttggcaaccca
ggcgaaaggctgcgcaaaaaacactggaacatggatgagctcccaaagttcgagaagaac
ttctaccaggagcacccggatgtgacccgcagaccacctcaagaggtggagaactacctg
agaagtaaagacgtaacagtgaaaggcagagactgccctaagcccatgatgaagtttcac
gaggccaattttccaaattatgtgatggatgtgattgccaaacaaggatgggctgagcca
actcctatccaggctcagggctggcctctggccctcagtgggaaagacatggtgggcatc
gcccagacaggctccggtaaaacccttgcttatctgctgcctgcaatcgtgcacattcaa
caccagccattcttggagcatggagacggacctatatgtttggtgctggccccgacccgt
gagctggctcagcaggtgcagcaggttgccgctgagtatggcagggcctcccgcctgaag
tcagtctgcgtctatggtggagctcccaaaggaccccagattcgggaccttgagagaggt
gttgagatctgtattgccaccccagggcgtctcattgactttctggaggctgggaagacc
aaccttcgcaggtgtacctaccttgtgctggacgaggctgaccgtatgctggatatgggc
ttcgagccccaaatccgcaaaattgtggaccaaattagaccggatcgtcagaccctcatg
tggagtgccacctggcccaaggaggtgcgccagctggctgaggacttcctgaagcagtac
gtccaaatcaacgtgggcgctctgcagctcagcgccaaccacaacatcctgcagatagtg
gacgtgtgcaacgacggagagaaggatgacaaactcctccggctgctggaagagatcatg
agtgagaaggagaacaagaccatcatctttaccgagaccaagagacgctgcgatgagcta
accaggaggatgaggcgagatggctggccagcaatgggtatccatggagacaagagccag
caggagagagactgggttctcaatgagttcaaatacggcaaggcccccatcctcatcgcc
actgacgtggcctcccgcggtctagatgtggaggatgtgaaatttgtcataaattatgac
tatcctaactcctctgaggactatatccaccgcattggacgcacggcccgcagtcaaaaa
acaggcaccgcctacaccttcttcacccccaacaacatgaaacaggccagtgacctcata
gctgtgctccgcgaagctaaccaggctatcaaccccaagcttctccagatggcagaggcc
agaggaggtcgtggaggggggggaagaggtggctttagggatgaccggcgagataggtat
tctggggggaggagttacggtggtggtggtggtggtggtggtggtagttacagggacaag
gatagcgacagggggttcagtgggggaccaaagagtgccttcggcgcaaaaacccaaaac
ggagtgggctacgggggtagcacctatgacaagggcgctagctctggcggtagctacggc
aacagctacggcagcaacggacaggctagcttcggctccaccaaccaggtgggtgcgttc
ggcggccagaacttccaggcccctccacagtttggagctgcgcaggcggctgccccaaac
ggcatgggtcgcccgccgttcccctttaacccacaggcacagcagccccaacaaccccca
cccatggttccctactctatgcctccacctttcccacagtaa
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