Salmo trutta (river trout): 115208719
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Entry
115208719 CDS
T08542
Name
(RefSeq) TAF5-like RNA polymerase II p300/CBP-associated factor-associated factor 65 kDa subunit 5L
KO
K03130
transcription initiation factor TFIID subunit 5
Organism
stru
Salmo trutta (river trout)
Pathway
stru03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
stru00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
115208719
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
stru03021
]
115208719
03036 Chromosome and associated proteins [BR:
stru03036
]
115208719
Transcription machinery [BR:
stru03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIID
115208719
Coactivators
SAGA/TFTC/STAGA complex
115208719
Chromosome and associated proteins [BR:
stru03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
PCAF complex
115208719
STAGA complex
115208719
TFTC complex
115208719
SAGA complex
115208719
SLIK complex
115208719
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40
WD40_Prp19
WD40_WDHD1_1st
WD40_CDC20-Fz
Beta-prop_CAF1B_HIR1
Beta-prop_EML_2
EIF3I
TFIID_NTD2
Beta-prop_TEP1_2nd
WD40_MABP1-WDR62_2nd
WDR55
Beta-prop_WDR90_POC16_2nd
Beta-prop_EML
Beta-prop_WDR75_1st
Beta-prop_TEP1_C
Beta-prop_SCAP
WD40_MABP1-WDR62_1st
Beta-prop_IFT122_1st
NBCH_WD40
WDR90_beta-prop_4th
ANAPC4_WD40
Beta-prop_RIG_2nd
Beta-prop_HPS5
Beta-prop_IFT140_1st
RMC1_N
Beta-prop_DCAF4
Beta-prop_SPT8
Beta-prop_EIPR1
Beta-prop_WDR19_1st
Beta-prop_Vps41
WD40_like
PEP5_VPS11_N
PROPPIN
WD_LRWD1
Beta-prop_ELP1_1st
Motif
Other DBs
NCBI-GeneID:
115208719
NCBI-ProteinID:
XP_029632893
Ensembl:
ENSSTUG00000012578
UniProt:
A0A673Y3N7
LinkDB
All DBs
Position
14:66723960..66728123
Genome browser
AA seq
607 aa
AA seq
DB search
MKRVRTEQIQYTVAQYLKRRQYVDTESSLKGTKLSHSAEEMAANLTVQTESGCANIVSAA
PCQADPQQYETQFSRLRNFLSEAVLPWGQEVSCILYPLFVYLHLDMVRCSLKGAVDGFYS
RFHGLFLGDAEQRSTVEQLRHVLTQQDVTANPKLLAFLDHKYVVNLTEPAYSYLLRYLQS
EDNSTVCRALSTHVQVEVTSSPRTDYQLYGTTGVGATGAATTAPNSTSSWSGTDGPERGE
AAGVEVPTGIPQSEAALEALQDCIKKVREGPPSLTTVCFYAFQHTEQLLNTAEVSADSKL
LAAGFDSSVVKLWSLRARKLKARPHRTDVSHIRLACDVLEEEADEEDGSGSEIKTLRGHS
GPVFRTAFLTDSSGLLSCSEDTSIRYWDLGSFTNTALYQGHAYPVWDVDVSPCSLYFASG
SHDRTARLWTFSRTYPLRLYAGHLADVDCVKFHPNSNYLATGSTDKTVRLWSTQQGASVR
LFTGHRGPVLSVAFAPNGKYLASAGEDQRVKLWDLASGALVKDLRGHTDSVTSLSFSPDS
SLVASSSMDNSVRVWDIRNSHGTTHVDGSSSELVGLYTGNTSNVLNVQFMACNLLLVTGT
AQEKHGQ
NT seq
1824 nt
NT seq
+upstream
nt +downstream
nt
atgaagcgggtacgcacggagcagatccagtacactgtagctcagtacctgaagcggagg
cagtatgtggacactgaaagttccctgaaggggactaaactgtcccattccgcagaggag
atggctgccaacctcacagtgcagacagagtcggggtgtgcaaacattgtctctgctgcc
ccttgccaagctgaccctcaacagtacgagacccaattttccagacttcgcaattttctc
tcagaagcggtgttgccatggggccaggaggtgagctgcatcctgtacccgctcttcgtt
tacctccacctggacatggtgcgctgcagcctgaagggggcggtggatggcttctacagc
cgcttccacggcctcttcctgggggacgccgagcagcgctccaccgtggagcagcttcgc
catgtcctcacccagcaggatgtcaccgccaaccccaagctcctggccttcctcgaccac
aagtacgtggtgaacctgacggagccggcctacagttacttgttacgctacctgcagagc
gaagacaacagtaccgtctgcagggccctcagcacccacgtccaggtagaggtcacctcc
tcaccacgcactgactaccagctgtacgggacgacgggtgtgggagctaccggggccgcc
accacggcccccaactctacctcctcgtggtcgggcacggatggccctgagcgaggagag
gcggcgggggtggaggtccccacagggatcccgcagagcgaggcggccctggaggcactg
caggactgcattaagaaggtgcgtgaggggccgccgtcactcaccaccgtgtgcttctac
gccttccagcacacggagcagctactgaacacggcagaggtgtcggccgacagcaagctg
ctggccgccgggttcgacagctcggtcgtcaagctatggagtcttagggccaggaaactg
aaggccaggccacaccggactgacgtgtcacacatccgcctagcatgcgacgtgctggaa
gaggaggcagatgaagaggacggctcgggcagcgagatcaagaccctgcgtggccacagc
ggtccggtgttccgcacagccttcctgacagacagctcgggcctgctatcctgctcggag
gacacgtccattcgctactgggacctgggcagcttcaccaacacggccctctaccagggc
cacgcctaccccgtctgggacgtggacgtcagcccctgcagcctctactttgccagcggc
tctcacgaccgcaccgcccgcctctggaccttctccaggacctaccccctgaggctctac
gccggccacctagcggacgtggactgcgtcaagttccaccccaactcaaactacctggcc
acaggctcaacggataaaaccgtccgcctctggagtacccagcagggggcgtcagtgcgc
ctgttcacaggccaccgcggccctgtgttgtctgtagccttcgcgcccaacgggaagtac
ctggcgtcggcgggcgaggaccaacgggtgaagctgtgggacctggcctcaggggctctg
gtcaaggacctgaggggccacacggacagtgtcaccagcctgtcgttcagccccgacagc
agcctggtggcctcctcttccatggacaactcagtcagggtgtgggacatccgaaactcc
cacgggacgacccacgtcgatggctcatccagcgagctggtggggctctacacaggcaac
accagcaacgtgctcaacgtccagttcatggcctgtaacttgctcctggtgacgggaaca
gcgcaggagaaacatggacagtag
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integrated database retrieval system
