Salmo trutta (river trout): 115208725
Help
Entry
115208725 CDS
T08542
Name
(RefSeq) LOW QUALITY PROTEIN: serine/threonine-protein kinase SMG1-like
KO
K08873
serine/threonine-protein kinase SMG1 [EC:
2.7.11.1
]
Organism
stru
Salmo trutta (river trout)
Pathway
stru03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
stru00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
115208725
09180 Brite Hierarchies
09181 Protein families: metabolism
01001 Protein kinases [BR:
stru01001
]
115208725
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
stru03019
]
115208725
Enzymes [BR:
stru01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.11 Protein-serine/threonine kinases
2.7.11.1 non-specific serine/threonine protein kinase
115208725
Protein kinases [BR:
stru01001
]
Serine/threonine kinases: Other
PIKK family [OT]
115208725
Messenger RNA biogenesis [BR:
stru03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Other surveillance factors
115208725
mRNA cycle factors
Common to processing body (P body) and stress granule
115208725
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
SMG1
PI3_PI4_kinase
SMG1_N
FATC
FAT
HEAT_GCN1_C_2
HEAT_ATR
HEAT
Motif
Other DBs
NCBI-GeneID:
115208725
NCBI-ProteinID:
XP_029632905
LinkDB
All DBs
Position
1:80969631..81067217
Genome browser
AA seq
3708 aa
AA seq
DB search
MSRKALGFRLSSAHKLQRNWNDWQPRGDSVSAASQDGVKCIASRDLGPAAAAVYDPTAVG
VTTSDRPVSPPLLHNDAFPDTADTLDEGGGYEAAGGFSDDTFGWKSLGQELRINDATADL
TTFQQHGNRALASKDMRKSHDRGMSHSDESRLSNLLRRVSREEDRDRRLATVRQLREFIT
HSDNKVALVKQLDTILSTLNDILNESSKLLSELRQEAAVCLGLLCTALSYEAERIFKWMF
VKFSSSPRDEVRLLYLVAAYRALEAAGERKAFSPVMQLVMSSLQSILENLDTPELLCQSV
RCILQVARCYPHVFSTNFRDTVDILVGWHIDHTQKQSLTQQVSGWLQSLEQFWVADLTFS
TTLLGQFLEDMEAYAEDLGHVGSGEAVDEDIPPPTVSLPKLAALLRVFSTVVRCIGQRFN
PIRGPPITQAYVSDVLNRVLACVSTAKQVLFSEPVLTAGNECVCVLLVSLEPSAQLTDAV
ITYGLDQLDACRACGPEYSLAVLSLITLIVDQINTKLPAWFVEKLLAPTSQLLELRFNRD
REVMSAALGVYQSVLSLKNIPILEAAYKLVLGEMACALSSLLVPLGLSPTPGTPSPTPPP
FPGIQHPVFAPLTLTPERAEFTLIFNLSALTTIGNTKNSLIGMWALSPTVFALLSQNLML
VHSDLAVYHPAVQYAVLYTLYSHCTRHDHFISSSLSSSSPSLFDGAVISTVTTATRKHFS
TLLSLLGALLRKEQLYTEARKLLLTWSLEMCLMMKRSDTYTPLFSLPSFHKFCKGLLHNA
LNEDPVICLQTCNSLQVISSSLNTELLQRCVDVCRVQLVHSAVRVRQAYGKLLRTIPLDV
TLSNHSHPEIEEISLVVRRHMSRPPSSTFHPQDFSDLISFILYGSQHRGGKEPWLERLYH
SCQRLEKREGVPGAAGGVCVPRGLLKTEAVLWQWAVWEAAQFTVLSKLRTPLGRAQDTFQ
TIEGMIRSLAAHSLNTEQELSQWSAGDTDDGHHSNQLRLALLLQFLENLEKLMYNAYEGC
ANALTAPPKGIRTFFYTNRQTCQDWLTRIRLALMRVGLLSGQPAVTVRHGLDLLTEIQNS
STLGPELEAPLVMLVEALCELHCPEAIQGLAAWSLTNTGKSLAWVSSVALQAEGRFEKAA
VEYQEQLCAVTGMDCSIKGFDSSLLKLGGANSSNTASPKHNGNGDGRKTVLLKSNECSSE
VLNLLANKACQCYVALGDWSSVQEWQASVHALKKNPGNPAAASVHLKTDFNYVRALSCFE
DGDFQECRAQLELLAGERDDYGLLNSTCSKDKLDLKRLLPAVLSPDPSELQKAIEVQLLR
SAVAAMTTANHEQEQKAMPTSDTLVRYLKQTGRICLGPLRLSTLTLSDGLPTLATLQLHC
CSALENTLSGQEDCLIPLYSEALSTCKQQDVQPWLHALRYTIYQRQLLLRLKGSSAPLDG
HLMELCLTAVKFARKQGNISLATRLLGQCSEEEEEEGGEEGLSRAFRRLSLAGAVGEKWG
PELQIEEAKVLCTAGQSMAAMEMLSSCALSFCRSGKCERAACRSVLTLCKWLLADWKDMT
PQLKQVVKRSGVMTPGVAALPPISRNITALLELPLEDQGMPRITAETTVSVGVGEPDLVL
GQLYQLSTSQAPEVAKSWAALASWAYRWGRKVVDNASQGEGVPLLPGEKKEIEELLPECT
SEEDKENIFSILGQAMCRPAGIQDEDMALQQEEEDDMVDVIWRQLLSACPWLEEQGEVEG
VQGGGSGVMEGLIRVWRRVVDRIFSLYKVSCGAYFTFLKLNAGQVPIDEDDPKLLLTNQN
SKQSNDDIIVMATLRLLRLLVKHAGELREGLELGLASTPTAPWRGIIPQLFSRLNHPEAY
IRQSICSLLCRVAQDSPHLILYPAIVGSLSLEGEAQHAGNKLPSALPTFLGSMQGEGLCE
EGEGTLGSNPASQEEDGRGEEFPALCSSQDQAMMHDCYSKIVDKLSAANPTMVLQVQMLV
GELRRVTLLWDELWLGVLQQQHMHVLRRIQQLEDEVKRVQNNNTLRKEEKVAIMCEKHSA
LMRPVVFALDHVRGITTTPAETPHETWFQQTYGDAITSALERLKSPHNPANPASSWVPFK
QIMLSLQQRAQKRTSYLLRLDHISPRLAAMATTEMALPGEVSATDALTIQSVGNTITILP
TKTKPKKLHFLGSDGRNYPYLFKGLEDLHLDERIMQFLSIVNTMFTKVNQQERPHFHARH
YSVTPLGTRSGLIQWVDGATPLFGLYKRWQQREAVLQAQKAQDSFQQQPQPLPLVPRPSE
LYYSKIGPALKGVGLSLDVSRRDWPLSVMRDVLKELMASTPPNLLAKELWCSCTTSSEWW
RVTQSYARSTAVMSMVGYIIGLGDRHLDNVLIDMTTGEVVHIDYNVCFEKGKSLRVPEKV
PFRMTHNIETALGVTGVEGIFRLSCEQVIQMMRRGRETLLTLLEAFVYDPLVDWTAGGEV
GFAGAVYGGGGQQAENKQSKREMERDITRSLFSSRVAEIKVNWFKNREEMLGVLPQVEGA
VEEYLTLQKLLSQGDKMTTKILEEMSFLEGAESCSDHLILTLEHRYSEHTQLASRQRTVQ
ELIQGKQGDLDQWMSQYQAAFSSLEATQLASLLQDISSHIDLGPPSYVPATAFLQNAGQA
HLISQCEGLEAELGSLLQQRRGALRGCLEQLHSYATVALLYPRAVLLRHRAHLWKQWLEE
LLCDMTVDHCQQISRQYEVQFAPQPPLASCQFLSSVELALQHQASETNTRVLRQAERVKA
EGATVHACEEQLQEIERCISVFLLENPEQGSLSLATIISSALCTLTRRNLVMEGAAAAAG
GQLVELTSRDGAWFLEELCSMSGNITSLVQLLGQCQLLPHDLDLPSPQETAQTVYLANAV
YTCLQELNTNFRQIIFPEALRCMLKGEATLETMLSELDLLVEQCADGVSLQGLADALHTH
LRSAAMGLEHEADTQCLHITRMLRAQYSQLMQPPGGSMDAVGQDSPKMSAGQMLLVAFDG
MFAQLETAFGQLTEKMISMEVPPAWRKVDVMREARAAQVHFFHSGPHRHVLEEIFFLKRL
QTIREFFRLCGSFAQTLSGTCPPAAEDPPPSNGPVAVVGLGGVGLPGKPLFRGAAAVVVS
EEQMTRPIKAFTAEFVRQMLIGLPTQTLGLALCSTLSALGLDLTAQVDAKDFGADGKVSL
DELCKQTVVQGLGAGRLSQLLLNRGTVLASSYDTAWKKLDLLRRLESSLDAAKVSLQRTQ
QHITMFQWQHEDVLGPRTQPMSVSPPPRSIILSSMKKKLYKLSQDEAAIAAVQEKLASLE
GSIEQRLKWAGGANPALAPVLQDFDLTIAERRALVARESQRTSQVTFLCSTILNFEGLRM
RTPEALSMDSALFELLKRCQQTCSYAAQFNTSVSSIELQLLHRLSPALELPIGSPDWLAC
AQKQLGQELATQGAVQEEREQQLDVATESLQLLVDSIKGILSNHNRQLADVKHLLRAMAK
DEENALAEGEEVTYEGSVRQFLLEYKAWQDNVQIVLFTVVQATGQPRGGGASQEGVELLQ
EIPATLKELHTQSTSVYNGLVGFASPLVTERGGDCSSPTSTAQTSFAAAVRCSGVKTQTD
SMSQNSRKLLPRNLGTPADTPPSAQTMTSKGLNPSPKRAVRDPKTGRAVQERNSYAVSVW
KRVKAKLEGRDVDPNRRMSVTEQVDCVIKEATNVDNLSQLYEGWTAWV
NT seq
8322 nt
NT seq
+upstream
nt +downstream
nt
atgagccgtaaagcccttgggtttcggcttagcagcgcccacaaactgcagcgaaactgg
aatgattggcagcccagaggcgacagcgtgtcagcagctagccaggacggtgtgaagtgc
atcgccagcagagacctgggtccagctgcagcagctgtatacgacccaacagcagtggga
gtaacaacctcggaccggcctgtctccccacctctcctacataatgatgccttcccagac
accgcagacacactggacgaagggggaggatatgaagctgcaggagggttcagtgatgat
acttttggttggaagtcgttggggcaagagttgaggatcaacgatgcgaccgccgatttg
accacttttcagcagcatggaaaccgtgctttagcttctaaggacatgaggaaatcccac
gacagagggatgtctcactccgatgagtctcgcctgtccaacctcctgcgccgtgtgtcc
cgtgaggaggacagggaccgccggctggccactgtcagacagctccgggagttcatcact
cactctgacaacaaagtggccctggtgaaacagttggataccatcctcagtaccctgaat
gatattttgaatgaaagcagtaagctgctgtcagagctgcgtcaggaagcagcggtgtgc
ctgggtctgctgtgcaccgctctgagctatgaagcagagcgcatcttcaagtggatgttt
gtcaagttcagctccagcccccgggacgaggtcaggctgctctacctggtggcagcatac
cgagccctggaggcagccggagagaggaaggccttctcacctgtcatgcagctggtgatg
agtagcctgcagtccatcctggagaacctggacacgccggagctgctgtgtcagagcgtc
cgctgcatcctgcaggtggcccgctgctacccacacgtcttcagcaccaacttcagagat
acggtggatatcttggtgggctggcacattgaccacacacagaaacagtctctgactcag
caggtctcaggctggctgcagagcctggagcagttctgggtagcagacctgaccttctct
accacgctgttgggacagtttctagaggacatggaggcctacgcagaggacctgggtcac
gtgggttctggcgaggcggtagacgaggacatccctccacccacggtgtctctgccaaaa
ctggccgccctgctgagggtgttcagcaccgtggtgcgctgcatcggacagcgtttcaac
cccattagaggaccgcccatcacacaggcatacgtctctgatgttttgaaccgggtgtta
gcgtgcgtgtcgacggccaaacaggtgttgttctctgagccggtgttgacggcggggaac
gagtgtgtgtgtgtcctgctggtgagcttggagccgtctgcacagctgaccgacgccgtc
atcacctacggcttggaccagctggatgcctgccgggcctgtggcccagagtacagcctg
gccgtcctcagcctcatcacattgattgtggaccagatcaacactaagcttccagcttgg
tttgtggagaagctgctggcaccgacatcacagctcctggagctacgcttcaacagggac
agagaggtgatgtcagcagccctgggtgtgtaccagtctgttttgagcctaaagaacatt
cccattctggaagctgcgtataaactggttctgggagagatggcctgtgccctgtccagc
cttctggtccctctgggcctctccccgacccctggtaccccctccccgacccctccaccc
tttcccggcatccagcaccctgtcttcgcccccctcaccctcaccccagagagggcagag
ttcaccctcatcttcaacctgtcagccctcaccaccatcggcaacaccaagaactcactc
atagggatgtgggctctgtctccgacggtgtttgcgttgttgagtcagaacctgatgttg
gtccactctgacctggccgtctaccaccctgctgttcagtatgctgtgttatataccctg
tactcacactgtaccagacatgatcacttcatctcgtccagcctgtcctcctcctcccct
tctctctttgacggggcggtcatcagcacggtaaccacggcaaccaggaaacacttcagc
actctgctgtccctgctgggagccctgctgaggaaggagcagctctacactgaggccagg
aagctgttgttgacgtggtctctggagatgtgcctgatgatgaagaggtctgatacctac
acccctctcttctccctgccctccttccacaagttctgcaagggtctgctccacaacgcc
ctgaatgaggacccagtcatctgcctccagacctgcaacagccttcaggtcatctcctcc
tcactcaacacagagctgctgcagaggtgtgtggatgtttgtcgtgtccagctggtgcac
tctgcggtgagggtgaggcaggcgtacggcaagctgctgaggacaatccctctggacgtg
acgctcagtaaccacagccacccagagatagaggagatctccctggtggtccgtcgccac
atgagccgcccccccagcagcacctttcacccccaggacttcagtgacctcatcagcttc
atcctctatggcagccagcaccgcggaggtaaagaaccatggctggagcgtttgtaccac
agctgtcagcgtctggagaagcgtgagggtgtccccggtgcggctggcggtgtgtgtgta
ccgcggggtctgctgaagactgaggcggtgctgtggcagtgggcggtgtgggaggcagct
cagttcactgtgttgtctaaactccgtactccgctgggacgggcacaggacaccttccag
actatagagggaaacaagctcccgtcggccctgcccaccttcctgggcagcatgcagggg
gaggggctgtgtgaggaaggggaggggacactgggcagtaaccccgcctcccaggaagaa
gatgggcggggtgaggagtttcctgctctgtgttccagccaggaccaggccatgatgcat
gactgctacagcaagatagtggacaagctgtctgcagccaaccccactatggtgttacag
gtacagatgctagtgggagagctgcgccgtgtgactctgctgtgggatgagttgtggctg
ggcgtcctgcagcagcagcacatgcacgtcctgcgcaggatacagcagctggaggacgag
gtcaagagagtgcagaacaacaacacactacgcaaggaggagaaggtggccatcatgtgt
gagaagcactctgctctgatgcgtcccgtggtgtttgctctggaccacgtgaggggcatc
accaccacgcccgccgagaccccccacgagacctggttccagcagacctacggggacgcc
atcacctcggccctggagagactgaagagccctcacaacccagccaaccccgccagcagc
tgggtcccgttcaaacaaatcatgctgagtctacagcagagggctcagaagaggaccagc
tatctgctgcgtctggaccacatcagcccccgcctggctgccatggcgaccactgagatg
gcgttgccgggcgaggtgtcggcaacggacgcgttgaccatccaaagtgttggcaacacc
atcaccatcctgccaaccaagaccaagcccaagaaactacacttcctgggctccgatgga
cgcaactacccttacctcttcaaaggtctggaggacctccacctagacgagcgaatcatg
cagttcctttccatagtcaacaccatgttcaccaaggtgaaccagcaggagcgcccccac
ttccacgcccgccactactccgtcaccccgctggggacacgctcagggctcatccaatgg
gtggacggcgccacgccgctgttcggcctctacaagcgctggcagcagagagaggccgtg
ctgcaggctcagaaggcccaggattcgttccagcagcagccccagcccctccctctggtt
ccacggcccagtgagctctactacagcaagataggccccgccctgaagggggtggggctc
agcctggatgtttcaaggcgcgattggccgctcagcgtgatgagggatgtgcttaaggag
ctgatggcatccacgccccctaacctgctggccaaagagctgtggtgctcctgtactacg
tctagtgagtggtggagggtcacacagtcctacgccaggtccactgctgtgatgtctatg
gtgggctacatcattggcctcggcgaccgtcaccttgacaacgtgctgattgacatgacg
acgggagaggtggtgcacatcgactacaacgtctgcttcgagaaagggaagagcctgcgt
gtgccagagaaagttccgttccgtatgacccacaacatagagacggccctgggagtcact
ggggtggagggcatcttcagactgtcctgtgaacaggtgatccagatgatgcgtcgtggg
cgggagacgctgctgaccctgctggaggcgtttgtgtacgaccctctggtggactggacg
gccgggggggaggtgggcttcgccggggccgtgtacggagggggggggcagcaggcggag
aacaagcagagcaagagggagatggagagagacatcacacgctccctcttctcctcccgc
gtcgctgagatcaaggtgaactggtttaagaatcgtgaggagatgttgggggtcctgcca
caggtggagggggcagtggaggagtacctcaccctgcagaagctgctctctcagggggac
aagatgaccaccaagatcctggaggagatgagcttcctggagggggctgagagctgctca
gaccatctcatactcaccctggaacacaggtactctgagcacacccagctagcatctcgt
cagcgtacggtccaggagttgatccaggggaagcagggtgacctggaccagtggatgtct
cagtaccaagcagccttcagcagcctggaggccacacagctagccagtctactgcaggac
atcagcagtcatatagacctgggccctcccagctatgtcccagccacagccttcctgcag
aacgccggccaggcccacctaatcagccagtgcgagggcctggaggctgagttgggctcc
ctgctgcagcagcgccgtggggccctgcgaggctgtctggagcagctccacagctatgcc
actgtggccctgctgtacccgcgggccgttctgctgcgccacagggcccacctctggaaa
cagtggctggaagagctgctctgtgacatgactgttgaccactgccagcagatttccaga
cagtatgaggtccagtttgccccccagcctccccttgcgtcgtgccagttcctgtccagc
gttgagctggccttgcagcaccaggcgtcagagaccaacacgcgggttctgcgccaggcg
gagcgggtcaaggccgagggagccacggtccacgcgtgtgaagaacagctgcaggagatc
gagcgttgcatcagtgtgttcctcctagagaacccggagcagggctctctcagcctggcc
accatcatctcatcagccctctgcaccctcaccaggcgtaacctggtgatggaaggagcg
gcagcggcggcagggggacagctggtagagttgacgtctcgtgacggggcctggttcctg
gaggagctgtgttccatgagcggtaatatcacctcattggtccagctgctggggcagtgt
cagctcctcccacacgacctggacctgccctcgccgcaggagaccgcccagaccgtctac
ctggccaacgccgtctacacctgtctacaggagctgaacactaacttccgtcagatcatc
ttcccggaggctctgcgctgcatgttgaagggcgaggccaccctggagaccatgctgtct
gagctggacctcttagtggagcagtgtgcagacggggtctccctgcaggggctggccgac
gccctgcacacacacctccgcagcgccgccatgggcctggagcacgaggcggacacacag
tgtctccacatcaccaggatgttgagggcccagtactctcagctgatgcagcctccaggg
ggcagtatggacgcagtgggacaggactctcctaagatgtccgccggtcagatgctgctg
gtggccttcgatggcatgtttgctcagctagagaccgccttcgggcagctcacagagaag
atgatctccatggaggtgccgccggcgtggcggaaggtggatgtgatgcgtgaggcgagg
gcggcccaggtccatttcttccacagcggtcctcacagacatgttctggaggagatcttc
ttcctcaagagactccaaaccatcagggagtttttcaggctctgtggatccttcgctcag
acactctctggtacgtgccccccagcggctgaggaccctcctccctccaacggcccagta
gcagtagtgggtctggggggtgtaggtctaccagggaagcccctgttccggggggctgcg
gcggtggtagtgagcgaggagcagatgacccggcccatcaaggcgttcacagcagagttt
gtccgtcagatgctgattggtcttcccacccagaccctgggcctggctctctgcagcacc
ctgtctgccctgggcctggacctgacagcacaggtggacgccaaggactttggagccgac
ggcaaggtgtcgttagatgagttgtgtaagcagacggtggtacagggtctgggcgcaggc
cgtctgtctcagctgctactgaacagaggtacggtgctggcatcctcctacgacacggcc
tggaagaaactggacctgctcagacgcttggagtccagcctggacgctgccaaggtctcc
ctgcaacgcacccagcaacacatcaccatgttccagtggcagcatgaggacgtgctcggc
cctaggacccagcctatgagtgtgagccctcctcctcgctccatcatcctcagtagtatg
aagaagaagctttacaaactcagccaggacgaggcggccatcgctgctgtacaggagaag
ctggcatcactagagggcagtatagagcagcggctgaagtgggccggaggggccaaccct
gccctggccccggtgctccaggactttgatctgaccatcgcagagcgccgcgccctagtg
gcccgggagagccagcgtaccagccaggtgacgttcctgtgcagtaccatactgaacttt
gagggtctgcggatgcggacccctgaggccctgagcatggactctgctctgtttgagctg
ctgaagaggtgccagcagacctgctcctacgctgcccagttcaacacctccgtctcctcc
atagagctacagctgctgcacagactgagcccggcgttggagctgcccatcggcagccct
gattggctagcttgtgcccagaagcagctgggtcaggagctggctacccagggggctgtg
caagaggagcgcgagcagcagctggacgtcgccacggaatcactgcagctattggtggac
agcatcaagggcatcctgtccaatcacaaccgccagctggctgacgtcaaacaccttctg
agggccatggccaaggacgaggagaacgcgctggcggagggggaggaagtgacctacgag
ggcagcgtgcgccagttcctgttggagtacaaggcgtggcaggacaacgtgcagatcgtg
ctgttcactgttgtccaggcaacgggccagccccgagggggaggagccagtcaggagggg
gtggagctactgcaggagatacctgctaccctgaaggagctacacacacagagcaccagt
gtgtataacggcctggttggctttgcgtctccgttggtgacagagaggggtggagactgt
tccagccccacctctacggctcagaccagcttcgctgcagcggtgaggtgcagcggtgtg
aagactcagacagactcaatgtcccagaattcacgcaagctcctcccccgtaaccttggc
accccggcggacaccccccccagcgctcagacgatgaccagcaagggtctgaatcccagc
cccaaacgggctgtacgcgaccccaagacgggacgagctgtccaggagaggaactcgtac
gcggtgagcgtgtggaagagggtgaaagccaagctggaggggagagacgtggaccccaac
aggaggatgagcgtcactgagcaggtggactgtgtgataaaggaggccaccaatgtggac
aacctgtcccagctgtacgagggctggacagcctgggtgtga
DBGET
integrated database retrieval system
