Streptomyces sp. VN1: EZV63_11145
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Entry
EZV63_11145 CDS
T10674
Name
(GenBank) ribonuclease E/G
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
strv Streptomyces sp. VN1
Pathway
strv03018
RNA degradation
Brite
Enzymes [BR:
strv01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
EZV63_11145
Messenger RNA biogenesis [BR:
strv03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
EZV63_11145
Ribosome biogenesis [BR:
strv03009
]
Prokaryotic type
rRNA processing factors
EZV63_11145
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Ortholog
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Gene cluster
GFIT
Other DBs
NCBI-ProteinID:
QIP70389
LinkDB
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Position
complement(2519537..2523634)
Genome browser
AA seq
1365 aa
AA seq
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MLEPTEPAESSATPTDSKANTPSDTLPPRRRRRAASRPAGPPSGAPKRPAETVAPEPAVV
TDEAEEPEETEEPEAATEEAQAARTAAQAPEPAPEPVAAARPRRRAVRRASAPAGAPEAT
GAAETVVPASAATAPAAEPAATSEPAAVSDTAAEDAAPRRTRRRATRTVTSPAEPAAAPA
AAAPASPAAEPVAEAPAAATEPAPAEAEEAAPKGRSRRRATRRVSAPSESPAEAAAEVVE
PTQAAEPAPAPAEAAASPEPAASAEPAGSAEDAAPRRARRRSTRKAASGFAAPAQNAARA
DEADAPKRPSRPAVAVFQAPVFAEPQFQTPERAAAEAAAEAAGTGPAAPADRTEATEDTE
EQNAGPRRRRRRRAAVAEESTEDRTAAPAAQEQPEGDADSGSGTDADESGEDHDDAEGSE
DSGSRRRRRRGGRRRRRGDAADGDLADGENEHTSAEHADRADESTADDAEQAEDDAEEGA
ESGGESGGSGSSRRRRRRRRRAGDGGSGDDGSSTDDPERTVVKVREPRPPREKGEPSDEV
QSIKGSTRLEAKKQRRREGREQGRRRVPIITEAEFLARREAVERVMVVRQHGERTQIGVL
EDGVLVEHYVNKEQATSYVGNVYLGKVQNVLPSMEAAFIDIGKGRNAVLYAGEVNFEALG
MANGPRRIESALKSGQPVLVQVTKDPIGHKGARLTSQVSLPGRYLVYVPEGSMTGISRKL
PDTERSRLKTILKKIVPEDAGVIVRTAAEGASEDELRRDVERLQAQWEDIQKKAKTTGGS
NAPTLLYGEPDMTVRVVRDIFNEDFSKVVVSGDEAWQTIHGYVSHVAPDLADRLSRWTSE
VDVFATYRIDEQLAKALDRKVWLPSGGSLVIDRTEAMIVVDVNTGKFTGQGGNLEETVTR
NNLEAAEEIVRQLRLRDLGGIIVIDFIDMVLESNRDLVLRRLLESLGRDRTKHQVAEVTS
LGLVQMTRKRVGQGLLESFSETCVHCNGRGVIVHLDQPVAAGGGGGGGSKRRKRARAGAE
QPHEHEAAVGTGPTAEQEAETESEAEVAAEAAEPVALPAPGFTPDEELYSSAAEAEAAAT
RGRGRRRSGGRRASAPAGAPKAAKSEAASGGAPTAQDVTVQEEVERPVRREPAAEVLAEP
AAVEDAVSGAPTPAPADAPAAAEAPAPAAEEAAPKGRTRRRATRKVSAPAGSPAGSEATV
LTVPETAPAEQEPQAPVAEAPAEPAAESAAPARPRRRAVRKSTAPTASEETAVVVVPSAD
APEQGEQGAPEGPSEGASAEEAAPAKKTAARKTAKKATAKKAATKKTAAKKTTTAKKATA
KKAAKSTTTKSAAAKKTTAKKAASKKTAAAAQQAPSSVTAATDEG
NT seq
4098 nt
NT seq
+upstream
nt +downstream
nt
atgctcgaaccgaccgaacccgcagagtcctcggccactccgacggactccaaagcgaac
acccccagcgacaccctgccgccgcgccgtcggcgcagggccgcgtcccgcccggcgggt
ccgccgtccggcgctcccaagaggccggcggagaccgtcgcgcccgagccggccgtcgtg
accgacgaggcggaagagccggaggagacggaggagccggaggccgcgacggaagaggcg
caggccgctcggaccgctgcccaggcgcccgagcccgcaccggagcccgtggccgccgcc
cggccgcgccgccgcgcggtgcgccgcgcgtccgcgcccgccggagcaccggaggcgacc
ggagctgccgagaccgtcgttccggcgtccgccgccaccgccccggcagccgagccggcc
gccacgtccgagccggccgccgtgtccgacacggccgccgaggacgccgcgccgcgccgc
acccgccgtcgcgccacccgcaccgtgacctcgcccgccgagccggccgccgctcccgcc
gccgcggcccctgcctctcccgctgcggagccggtcgccgaggcccccgcggccgccacc
gagcccgcgccggccgaggccgaggaggccgcgcccaagggccgctcccgccgccgcgcc
acgcggcgcgtgtccgcgccgagcgagtcgcccgccgaggccgccgccgaggtggtcgag
ccgacgcaggccgccgagcccgctccggcccccgccgaggccgccgcctccccggagccc
gctgcctccgccgagcccgccggctccgccgaggacgccgcgccgcgccgtgcgcgccgc
cggtccacccgcaaggccgcctccggcttcgccgctcccgcgcagaacgccgcacgcgcc
gacgaggcggacgcccccaagcgcccgtcgcggcccgccgtcgccgtgttccaggcgccc
gtgttcgccgagccccagttccagacgcccgagcgcgccgcggccgaggccgccgccgag
gcggccggtaccgggcccgcggcccccgccgaccggaccgaggccaccgaggacacggag
gagcagaacgccgggccgcgccgccgccgccggcgccgggctgccgtcgccgaggagagc
accgaggaccggaccgccgcccccgccgcgcaggagcagcccgagggcgacgcggactcc
ggttccggcaccgacgccgacgagtcgggcgaggaccacgacgacgccgagggctccgag
gactccggctcccgccgccgccgtcgccggggcggccgtcgccgccgccggggtgacgcc
gccgacggcgacctggcggacggcgagaacgagcacacctccgccgagcacgccgaccgg
gccgacgaaagcaccgcggacgacgccgagcaggccgaggacgacgccgaggaaggcgcg
gagtccggcggcgagagcggcgggtccggcagcagccgcaggcgccgccgccgtcgccgc
cgcgccggggacggcggctcgggcgacgacggctcgtccacggacgaccccgagcgcacc
gtcgtcaaggtccgcgagccccgacccccgcgggagaagggcgagccgtccgacgaggtg
cagtccatcaagggctcgacccgcctggaggccaagaagcagcgccgccgggaaggccgc
gagcagggccgccgacgcgtcccgatcatcaccgaggccgagttcctggcccgccgcgag
gccgtcgagcgcgtcatggtcgtgcgccagcacggcgagcgcacccagatcggcgtcctg
gaggacggcgtgctcgtcgagcactacgtcaacaaggagcaggccacctcgtacgtcggc
aacgtctacctcggcaaggtgcagaacgtgctgccgtcgatggaggccgccttcatcgac
atcggcaagggccgcaacgccgtcctgtacgccggcgaggtcaacttcgaggcgctgggc
atggcgaacggcccgcgccgcatcgagtccgccctcaagtccggccagccggtcctcgtg
caggtcaccaaggacccgatcggccacaagggcgcccggctgaccagccaggtctcgctg
cccggccgctacctggtctacgtgcccgagggctcgatgaccgggatcagccgcaagctg
cccgacaccgagcggtcccggctgaagaccatcctcaagaagatcgtccccgaggacgcg
ggcgtgatcgtgcgcaccgccgccgagggcgccagcgaggacgagctgcgccgcgacgtc
gaacggctccaggcgcagtgggaggacatccagaagaaggccaagaccaccggcggctcg
aacgcgccgacgctgctctacggcgagccggacatgaccgtccgggtcgtgcgggacatc
ttcaacgaggacttctccaaggtcgtcgtgagcggcgacgaggcctggcagaccatccac
ggctacgtgtcgcacgtggcgccggacctcgccgaccggctgtcccggtggaccagcgag
gtcgacgtcttcgccacgtaccggatcgacgagcagctcgccaaggcgctggaccggaag
gtctggctgcccagcggtggttcgctggtgatcgaccggaccgaggcgatgatcgtcgtc
gacgtcaacaccggcaagttcaccggccagggcggcaacctggaggagacggtcaccagg
aacaacctggaggcggccgaggagatcgtgcgccagctccggctgcgcgacctcggcggc
atcatcgtcatcgacttcatcgacatggtgctggagtccaaccgggacctggtgctgcgg
cgcctgctggagtccctcggccgggaccgtacgaagcaccaggtcgccgaggtgacctcg
ctgggcctggtgcagatgacccgcaagcgggtcggccagggcctgctggagtcgttctcc
gagacctgcgtccactgcaacggccggggcgtcatcgtccacctcgaccagccggtcgcc
gccggtggcggtggcggtggcgggagcaagcgccgcaagcgggcgcgggccggcgccgag
cagccgcacgagcacgaggccgcggtggggaccggcccgaccgcggagcaggaggcggag
accgagtccgaggcggaggtcgccgccgaggcggccgagccggtcgccctcccggcgccc
gggttcaccccggacgaggagctgtacagcagcgcggccgaggccgaggccgccgccacg
cgcggtcgcggccggcgccgcagcggtggccggcgggcgtcggccccggcgggcgccccg
aaggccgcgaagagcgaggccgcgtccggcggagccccgaccgcgcaggacgtcaccgtg
caggaggaggtcgagcgcccggtgcggcgcgagcccgccgccgaggtgctggccgagccc
gccgccgtcgaggacgccgtctccggcgccccgacgccggccccggccgacgcccctgcc
gccgccgaggcaccggctcccgccgccgaggaggccgctcccaagggccgtacccgccgt
cgggccacccgcaaggtgtccgcgccggccggttcgcccgcgggctccgaggccaccgtc
ctgacggtgccggagaccgcgccggccgagcaggagccgcaggcccccgtcgccgaggct
cccgcggagccggccgccgagagcgccgccccggcccgtccgcggcgccgggcggtgcgc
aagtccaccgctcccaccgcctccgaggagacggccgtcgtggtcgtcccgtcggccgac
gcgccggagcagggcgagcagggcgcgcccgagggcccgtccgagggggcgtccgccgag
gaggccgctccggccaagaagacggcggcccgcaagacggccaagaaggcgacggcgaag
aaggccgccaccaagaagaccgcggccaagaagacgacgaccgcgaagaaggccacggcc
aagaaggcggccaagtcgacgaccaccaagtcggcggccgccaagaagaccacggccaag
aaggcggcgtcgaagaagaccgcggcggccgcccagcaggcaccgtcctcggtcacggcc
gccaccgacgagggctga
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